Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38358 * 120.34800 * 2 1 4 4 N 1.31919 * 121.07883 * 180.27098 * 3 2 1 5 5 C 1.31688 * 121.88465 * 0.02562 * 4 3 2 6 6 C 1.39526 * 120.56346 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.55842 * 179.97438 * 6 5 4 8 8 O 1.21549 * 120.00014 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00052 * 0.02857 * 7 6 5 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46903 * 34.99514 * 10 9 7 12 12 C 1.52998 * 109.46811 * 274.99905 * 10 9 7 13 13 C 1.52997 * 109.47190 * 154.99637 * 10 9 7 14 14 H 1.08997 * 109.47298 * 60.00119 * 13 10 9 15 15 C 1.53002 * 109.47304 * 300.00202 * 13 10 9 16 16 N 1.46500 * 109.47190 * 179.97438 * 13 10 9 17 17 C 1.36939 * 120.00056 * 205.00054 * 16 13 10 18 18 H 1.07997 * 119.99909 * 0.02562 * 17 16 13 19 19 C 1.38809 * 120.00012 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99945 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47349 * 120.00104 * 21 19 17 24 24 H 1.48497 * 109.47188 * 240.00050 * 21 19 17 25 25 C 1.38355 * 120.35066 * 180.27566 * 2 1 3 26 26 H 1.08998 * 109.47142 * 269.72301 * 1 2 3 27 27 H 1.08996 * 109.46912 * 29.72324 * 1 2 3 28 28 H 1.09000 * 109.46651 * 149.72139 * 1 2 3 29 29 H 1.08008 * 119.45884 * 0.25421 * 3 2 1 30 30 H 1.08000 * 119.71869 * 179.97438 * 5 4 3 31 31 H 0.97005 * 120.00217 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.46644 * 180.02562 * 12 10 9 33 33 H 1.08997 * 109.47067 * 299.99508 * 12 10 9 34 34 H 1.08994 * 109.47754 * 60.00033 * 12 10 9 35 35 H 1.09005 * 109.47221 * 180.02562 * 15 13 10 36 36 H 1.09001 * 109.46615 * 299.99737 * 15 13 10 37 37 H 1.08996 * 109.47031 * 60.00114 * 15 13 10 38 38 H 0.96996 * 120.00000 * 25.00053 * 16 13 10 39 39 H 0.97009 * 119.99807 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.85081 * 359.70453 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 -0.0053 5 6 4.2349 0.1016 -0.0114 6 6 3.6054 -1.1435 -0.0118 7 6 4.4023 -2.3887 -0.0192 8 8 3.8434 -3.4681 -0.0199 9 7 5.7487 -2.3271 -0.0250 10 6 6.5384 -3.5610 -0.0317 11 1 6.0226 -4.3193 -0.6208 12 6 6.7138 -4.0620 1.4033 13 6 7.9117 -3.2842 -0.6467 14 1 8.4275 -2.5260 -0.0577 15 6 7.7363 -2.7832 -2.0817 16 7 8.7016 -4.5180 -0.6529 17 6 10.0696 -4.4551 -0.6588 18 1 10.5661 -3.4961 -0.6584 19 6 10.8181 -5.6241 -0.6641 20 7 10.2130 -6.7930 -0.6630 21 14 12.6841 -5.5384 -0.6713 22 1 13.1143 -4.1171 -0.6696 23 1 13.2156 -6.2174 0.5377 24 1 13.2058 -6.2126 -1.8873 25 6 2.2061 -1.1939 -0.0057 26 1 -0.3633 -0.0050 1.0276 27 1 -0.3633 0.8924 -0.5095 28 1 -0.3632 -0.8875 -0.5182 29 1 1.6629 2.1275 0.0042 30 1 5.3135 0.1562 -0.0161 31 1 6.1948 -1.4658 -0.0247 32 1 7.3018 -4.9799 1.3983 33 1 7.2296 -3.3038 1.9923 34 1 5.7355 -4.2592 1.8415 35 1 8.7147 -2.5864 -2.5200 36 1 7.2205 -3.5415 -2.6708 37 1 7.1488 -1.8651 -2.0767 38 1 8.2557 -5.3794 -0.6528 39 1 10.7361 -7.6099 -0.6663 40 1 1.6859 -2.1403 -0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485134013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = 0.738099 kcal Electronic energy + Delta-G solvation = -21023.290425 eV Core-core repulsion = 17837.996840 eV Total energy + Delta-G solvation = -3185.293584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84232 -39.25719 -36.76475 -34.27576 -33.77239 -32.58822 -31.53235 -29.47657 -28.41615 -27.60252 -24.90471 -24.00960 -23.03629 -22.47662 -20.34114 -20.04870 -17.92769 -17.42881 -17.07349 -16.50694 -15.52112 -15.15301 -14.62710 -14.55895 -14.24951 -13.71575 -13.63979 -13.41716 -13.30148 -13.10053 -12.98877 -12.93406 -12.46402 -12.22396 -11.88396 -11.72534 -11.21011 -10.98661 -10.85873 -10.72465 -10.28188 -10.20645 -10.04864 -9.90389 -9.75238 -9.56949 -9.30134 -9.05427 -8.81112 -7.01481 -5.79794 -3.09556 0.40826 0.90137 2.80006 3.14583 3.41544 3.47366 3.49438 3.62951 4.01348 4.38357 4.51448 4.56266 4.61695 4.65228 4.85923 5.13411 5.20025 5.30188 5.33690 5.46904 5.58193 5.65018 5.71956 5.76821 5.85408 5.88125 6.08234 6.16379 6.26954 6.36131 6.39317 6.48902 6.58523 6.78637 6.90100 7.00114 7.54165 7.58561 7.67138 8.23517 8.37734 9.49320 10.04137 10.39208 11.42588 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041887 B = 0.003245 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.309347 B = 8625.539368 C = 8974.036373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.147 4.147 3 C 0.116 3.884 4 N -0.483 5.483 5 C 0.126 3.874 6 C -0.175 4.175 7 C 0.560 3.440 8 O -0.535 6.535 9 N -0.709 5.709 10 C 0.135 3.865 11 H 0.087 0.913 12 C -0.153 4.153 13 C 0.169 3.831 14 H 0.051 0.949 15 C -0.165 4.165 16 N -0.718 5.718 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.397 0.603 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.610 15.422 1.967 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.041 4.041 4 N -0.191 5.191 5 C -0.032 4.032 6 C -0.181 4.181 7 C 0.345 3.655 8 O -0.413 6.413 9 N -0.360 5.360 10 C 0.031 3.969 11 H 0.105 0.895 12 C -0.211 4.211 13 C 0.058 3.942 14 H 0.069 0.931 15 C -0.225 4.225 16 N -0.360 5.360 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.047 4.047 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.232 0.768 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.345 15.467 1.975 23.323 hybrid contribution 0.777 -0.685 -0.080 1.039 sum -16.568 14.782 1.895 22.284 Atomic orbital electron populations 1.20736 0.89641 1.03439 1.02885 1.20949 0.98013 0.93776 1.02107 1.22891 0.89958 0.97649 0.93624 1.67690 1.08036 1.30994 1.12379 1.23001 1.00369 0.86829 0.92987 1.21124 0.95218 0.95064 1.06652 1.17988 0.82404 0.88190 0.76898 1.90782 1.71086 1.29542 1.49879 1.46014 1.05473 1.10537 1.73956 1.21410 0.92336 0.85450 0.97722 0.89471 1.22055 1.01050 1.02677 0.95317 1.20393 0.88987 0.91249 0.93585 0.93076 1.22459 1.01027 0.99144 0.99904 1.42295 1.03018 1.02022 1.88656 1.19230 0.82187 0.92598 1.42928 0.91075 1.24745 0.97913 0.95286 1.02876 1.69675 1.34143 0.96577 1.57440 0.86127 0.85707 0.77203 0.77182 1.20568 1.21873 1.21892 1.21656 0.92548 0.99023 0.91495 0.90656 0.90949 0.90973 0.82389 0.82305 0.76835 0.89943 0.92986 0.93417 0.92535 0.93369 0.94607 0.78028 0.93487 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.03 36.01 0.36 -0.23 16 2 C -0.15 -1.24 5.89 -104.53 -0.62 -1.85 16 3 C 0.12 1.01 10.85 -17.47 -0.19 0.82 16 4 N -0.48 -5.21 10.34 -12.91 -0.13 -5.35 16 5 C 0.13 1.34 10.71 -17.13 -0.18 1.15 16 6 C -0.18 -2.08 5.89 -104.82 -0.62 -2.70 16 7 C 0.56 8.14 7.75 -12.33 -0.10 8.04 16 8 O -0.54 -9.67 16.08 5.32 0.09 -9.58 16 9 N -0.71 -9.67 4.34 -54.76 -0.24 -9.90 16 10 C 0.14 2.28 2.21 -67.93 -0.15 2.13 16 11 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 12 C -0.15 -2.62 9.33 37.16 0.35 -2.27 16 13 C 0.17 3.16 2.52 -67.93 -0.17 2.99 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 C -0.17 -2.88 9.34 37.16 0.35 -2.53 16 16 N -0.72 -17.21 4.43 -53.43 -0.24 -17.45 16 17 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.02 -0.22 9.39 -38.87 -0.37 -0.59 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.16 1.34 6.42 -52.49 -0.34 1.00 16 31 H 0.40 4.34 6.45 -40.82 -0.26 4.07 16 32 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 38 H 0.39 9.98 7.58 -40.82 -0.31 9.67 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.15 1.53 7.74 -52.49 -0.41 1.12 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -32.09 338.29 -7.13 -39.22 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.82 Total: 9.85 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.58 Total: -1.99 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.12 Total: -59.59 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.09 -7.13 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.960 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds