Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38358 * 120.34800 * 2 1 4 4 N 1.31919 * 121.07883 * 180.27098 * 3 2 1 5 5 C 1.31688 * 121.88465 * 0.02562 * 4 3 2 6 6 C 1.39526 * 120.56346 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.55842 * 179.97438 * 6 5 4 8 8 O 1.21549 * 120.00014 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00052 * 0.02857 * 7 6 5 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46903 * 34.99514 * 10 9 7 12 12 C 1.52998 * 109.46811 * 274.99905 * 10 9 7 13 13 C 1.52997 * 109.47190 * 154.99637 * 10 9 7 14 14 H 1.08997 * 109.47298 * 60.00119 * 13 10 9 15 15 C 1.53002 * 109.47304 * 300.00202 * 13 10 9 16 16 N 1.46500 * 109.47190 * 179.97438 * 13 10 9 17 17 C 1.36939 * 120.00056 * 205.00054 * 16 13 10 18 18 H 1.07997 * 119.99909 * 0.02562 * 17 16 13 19 19 C 1.38809 * 120.00012 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99945 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47349 * 120.00104 * 21 19 17 24 24 H 1.48497 * 109.47188 * 240.00050 * 21 19 17 25 25 C 1.38355 * 120.35066 * 180.27566 * 2 1 3 26 26 H 1.08998 * 109.47142 * 269.72301 * 1 2 3 27 27 H 1.08996 * 109.46912 * 29.72324 * 1 2 3 28 28 H 1.09000 * 109.46651 * 149.72139 * 1 2 3 29 29 H 1.08008 * 119.45884 * 0.25421 * 3 2 1 30 30 H 1.08000 * 119.71869 * 179.97438 * 5 4 3 31 31 H 0.97005 * 120.00217 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.46644 * 180.02562 * 12 10 9 33 33 H 1.08997 * 109.47067 * 299.99508 * 12 10 9 34 34 H 1.08994 * 109.47754 * 60.00033 * 12 10 9 35 35 H 1.09005 * 109.47221 * 180.02562 * 15 13 10 36 36 H 1.09001 * 109.46615 * 299.99737 * 15 13 10 37 37 H 1.08996 * 109.47031 * 60.00114 * 15 13 10 38 38 H 0.96996 * 120.00000 * 25.00053 * 16 13 10 39 39 H 0.97009 * 119.99807 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.85081 * 359.70453 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 -0.0053 5 6 4.2349 0.1016 -0.0114 6 6 3.6054 -1.1435 -0.0118 7 6 4.4023 -2.3887 -0.0192 8 8 3.8434 -3.4681 -0.0199 9 7 5.7487 -2.3271 -0.0250 10 6 6.5384 -3.5610 -0.0317 11 1 6.0226 -4.3193 -0.6208 12 6 6.7138 -4.0620 1.4033 13 6 7.9117 -3.2842 -0.6467 14 1 8.4275 -2.5260 -0.0577 15 6 7.7363 -2.7832 -2.0817 16 7 8.7016 -4.5180 -0.6529 17 6 10.0696 -4.4551 -0.6588 18 1 10.5661 -3.4961 -0.6584 19 6 10.8181 -5.6241 -0.6641 20 7 10.2130 -6.7930 -0.6630 21 14 12.6841 -5.5384 -0.6713 22 1 13.1143 -4.1171 -0.6696 23 1 13.2156 -6.2174 0.5377 24 1 13.2058 -6.2126 -1.8873 25 6 2.2061 -1.1939 -0.0057 26 1 -0.3633 -0.0050 1.0276 27 1 -0.3633 0.8924 -0.5095 28 1 -0.3632 -0.8875 -0.5182 29 1 1.6629 2.1275 0.0042 30 1 5.3135 0.1562 -0.0161 31 1 6.1948 -1.4658 -0.0247 32 1 7.3018 -4.9799 1.3983 33 1 7.2296 -3.3038 1.9923 34 1 5.7355 -4.2592 1.8415 35 1 8.7147 -2.5864 -2.5200 36 1 7.2205 -3.5415 -2.6708 37 1 7.1488 -1.8651 -2.0767 38 1 8.2557 -5.3794 -0.6528 39 1 10.7361 -7.6099 -0.6663 40 1 1.6859 -2.1403 -0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485134013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = -20.810126 kcal Electronic energy + Delta-G solvation = -21024.224826 eV Core-core repulsion = 17837.996840 eV Total energy + Delta-G solvation = -3186.227985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75011 -40.34994 -38.26655 -35.71337 -34.65384 -33.83345 -32.97257 -30.87314 -30.14950 -28.19544 -25.95732 -25.87001 -24.00939 -23.67658 -21.61220 -21.38327 -19.43365 -18.77442 -17.95729 -17.46057 -16.86830 -16.47970 -16.17775 -15.70378 -15.34028 -15.14402 -14.99476 -14.68951 -14.36846 -14.15721 -14.07051 -13.61427 -13.49532 -13.42629 -13.21215 -12.95184 -12.80620 -12.74924 -12.60191 -12.28412 -12.08985 -11.74824 -11.50617 -11.31324 -10.99602 -10.88081 -10.48512 -10.22199 -9.93522 -9.01349 -7.91618 -5.20595 -0.40675 0.15016 1.49876 1.49933 1.59786 1.77991 1.98104 2.59565 2.79399 3.28098 3.42844 3.64293 3.75958 3.80389 3.83902 3.92212 4.03000 4.18439 4.19349 4.34169 4.51097 4.58729 4.74236 4.78325 4.84219 4.86991 4.93239 4.98238 5.04441 5.14192 5.18034 5.24700 5.30527 5.46444 5.51222 5.57255 5.59860 6.29299 6.45077 6.81458 7.11382 7.35885 8.08757 8.32095 9.32078 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041887 B = 0.003245 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.309347 B = 8625.539368 C = 8974.036373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.119 3.881 4 N -0.501 5.501 5 C 0.127 3.873 6 C -0.192 4.192 7 C 0.562 3.438 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.150 3.850 11 H 0.062 0.938 12 C -0.144 4.144 13 C 0.168 3.832 14 H 0.064 0.936 15 C -0.156 4.156 16 N -0.730 5.730 17 C -0.230 4.230 18 H 0.081 0.919 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.297 1.297 24 H -0.298 1.298 25 C -0.034 4.034 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.192 0.808 30 H 0.177 0.823 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.372 0.628 39 H 0.249 0.751 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.415 18.627 2.084 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.038 4.038 4 N -0.208 5.208 5 C -0.031 4.031 6 C -0.197 4.197 7 C 0.350 3.650 8 O -0.458 6.458 9 N -0.349 5.349 10 C 0.044 3.956 11 H 0.080 0.920 12 C -0.202 4.202 13 C 0.059 3.941 14 H 0.082 0.918 15 C -0.216 4.216 16 N -0.371 5.371 17 C -0.362 4.362 18 H 0.099 0.901 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.800 3.200 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.226 1.226 25 C -0.061 4.061 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.209 0.791 30 H 0.194 0.806 31 H 0.251 0.749 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.204 0.796 39 H 0.058 0.942 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.155 18.763 2.090 26.191 hybrid contribution 0.872 -1.557 -0.109 1.788 sum -17.282 17.205 1.981 24.467 Atomic orbital electron populations 1.20824 0.87293 1.04566 1.03894 1.21245 0.99606 0.92737 1.00532 1.23497 0.89537 0.99028 0.91689 1.67774 1.09133 1.30818 1.13113 1.23220 1.01286 0.86195 0.92376 1.20906 0.95459 0.94102 1.09229 1.18393 0.82378 0.88648 0.75615 1.90762 1.71814 1.31366 1.51843 1.45752 1.05250 1.10111 1.73739 1.20968 0.91446 0.86254 0.96891 0.91959 1.21935 1.00709 1.01789 0.95776 1.20564 0.89294 0.89467 0.94782 0.91800 1.22319 1.00845 1.00287 0.98137 1.42477 1.02723 1.03218 1.88647 1.19621 0.83487 0.92733 1.40344 0.90087 1.25527 1.02096 0.95181 1.04104 1.69836 1.35431 0.97046 1.59831 0.85114 0.80792 0.77764 0.76335 1.18722 1.22410 1.22566 1.21802 0.92386 0.99907 0.91986 0.89555 0.88814 0.90924 0.79116 0.80570 0.74896 0.92744 0.91568 0.93332 0.93633 0.94878 0.90900 0.79618 0.94205 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.03 71.24 0.71 -0.13 16 2 C -0.14 -2.01 5.89 -19.81 -0.12 -2.13 16 3 C 0.12 1.69 10.85 84.71 0.92 2.61 16 4 N -0.50 -9.43 10.34 -194.75 -2.01 -11.44 16 5 C 0.13 2.42 10.71 85.03 0.91 3.33 16 6 C -0.19 -4.34 5.89 -19.99 -0.12 -4.46 16 7 C 0.56 16.13 7.75 86.79 0.67 16.80 16 8 O -0.58 -21.30 16.08 -3.87 -0.06 -21.37 16 9 N -0.70 -18.20 4.34 -445.43 -1.93 -20.13 16 10 C 0.15 5.04 2.21 44.99 0.10 5.14 16 11 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 12 C -0.14 -4.96 9.33 71.98 0.67 -4.29 16 13 C 0.17 6.16 2.52 44.99 0.11 6.27 16 14 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 15 C -0.16 -5.23 9.34 71.98 0.67 -4.56 16 16 N -0.73 -35.37 4.43 -322.95 -1.43 -36.80 16 17 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 21 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 25 C -0.03 -0.70 9.39 22.73 0.21 -0.48 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.36 8.09 -2.39 -0.02 0.34 16 28 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 29 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.18 2.49 6.42 -2.91 -0.02 2.47 16 31 H 0.41 8.04 6.45 -92.70 -0.60 7.44 16 32 H 0.05 2.19 7.44 -2.38 -0.02 2.17 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.88 7.44 -2.39 -0.02 1.86 16 38 H 0.37 19.92 7.58 -92.71 -0.70 19.22 16 39 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 40 H 0.14 2.95 7.74 -2.91 -0.02 2.92 16 Total: -1.00 -70.40 338.29 2.68 -67.73 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.25 Total: 30.46 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.05 Total: 2.83 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -5.09 Total: -127.21 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.40 2.68 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.916 kcal (2) G-P(sol) polarization free energy of solvation -70.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds