Wall clock time and date at job start Mon Mar 30 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38630 * 120.47232 * 2 1 4 4 C 1.38581 * 118.49091 * 179.76367 * 3 2 1 5 5 C 1.38607 * 119.34927 * 0.53749 * 4 3 2 6 6 N 1.31495 * 120.90342 * 359.70648 * 5 4 3 7 7 C 1.32747 * 121.63968 * 0.02562 * 6 5 4 8 8 C 1.48171 * 119.72333 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99767 * 256.00651 * 8 7 6 10 10 N 1.34776 * 120.00131 * 75.99915 * 8 7 6 11 11 C 1.46501 * 119.99727 * 5.26247 * 10 8 7 12 12 C 1.46497 * 120.00299 * 185.25670 * 10 8 7 13 13 C 1.53006 * 109.46958 * 90.00209 * 12 10 8 14 14 H 1.09005 * 109.47040 * 65.00165 * 13 12 10 15 15 C 1.52995 * 109.47133 * 185.00264 * 13 12 10 16 16 N 1.46498 * 109.47136 * 305.00447 * 13 12 10 17 17 C 1.36939 * 120.00072 * 154.99715 * 16 13 12 18 18 H 1.07995 * 120.00007 * 0.02562 * 17 16 13 19 19 C 1.38817 * 119.99863 * 179.97438 * 17 16 13 20 20 N 1.31616 * 119.99966 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99951 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47190 * 89.99690 * 21 19 17 23 23 H 1.48507 * 109.46800 * 209.99327 * 21 19 17 24 24 H 1.48498 * 109.47408 * 329.99148 * 21 19 17 25 25 H 1.09001 * 109.46862 * 264.53864 * 1 2 3 26 26 H 1.08998 * 109.47325 * 144.53914 * 1 2 3 27 27 H 1.08996 * 109.46902 * 24.53458 * 1 2 3 28 28 H 1.08001 * 120.74982 * 0.02573 * 3 2 1 29 29 H 1.07998 * 120.33013 * 180.26541 * 4 3 2 30 30 H 1.08004 * 119.54848 * 179.72191 * 5 4 3 31 31 H 1.09005 * 109.47233 * 84.75562 * 11 10 8 32 32 H 1.09004 * 109.47145 * 204.75672 * 11 10 8 33 33 H 1.08993 * 109.47485 * 324.75546 * 11 10 8 34 34 H 1.08996 * 109.47728 * 210.00187 * 12 10 8 35 35 H 1.08998 * 109.47141 * 330.00697 * 12 10 8 36 36 H 1.09001 * 109.47151 * 299.99798 * 15 13 12 37 37 H 1.09005 * 109.47239 * 60.00023 * 15 13 12 38 38 H 1.08999 * 109.47101 * 179.97438 * 15 13 12 39 39 H 0.97010 * 119.99987 * 334.99772 * 16 13 12 40 40 H 0.96994 * 120.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 0.0050 5 6 4.2322 -0.0840 -0.0015 6 7 3.5407 -1.2024 -0.0065 7 6 2.2133 -1.2004 -0.0061 8 6 1.4766 -2.4860 -0.0125 9 8 0.9535 -2.8814 -1.0356 10 7 1.3870 -3.2169 1.1163 11 6 1.9170 -2.6880 2.3754 12 6 0.7594 -4.5403 1.0842 13 6 1.8210 -5.6011 0.7861 14 1 2.5358 -5.6408 1.6082 15 6 1.1480 -6.9661 0.6291 16 7 2.5213 -5.2563 -0.4536 17 6 3.7942 -5.7123 -0.6705 18 1 4.2817 -6.3264 0.0722 19 6 4.4575 -5.3860 -1.8454 20 7 5.6807 -5.8247 -2.0541 21 14 3.6140 -4.3244 -3.1303 22 1 3.9067 -2.8939 -2.8602 23 1 4.1176 -4.6865 -4.4797 24 1 2.1472 -4.5491 -3.0728 25 1 -0.3633 -0.0978 1.0230 26 1 -0.3634 -0.8370 -0.5962 27 1 -0.3633 0.9349 -0.4267 28 1 1.6901 2.1414 0.0004 29 1 4.1723 2.0597 0.0095 30 1 5.3115 -0.1250 -0.0021 31 1 1.1671 -2.0527 2.8470 32 1 2.1637 -3.5147 3.0416 33 1 2.8144 -2.1029 2.1747 34 1 0.2995 -4.7480 2.0503 35 1 -0.0039 -4.5617 0.3063 36 1 0.6270 -7.2226 1.5515 37 1 0.4333 -6.9264 -0.1929 38 1 1.9043 -7.7217 0.4164 39 1 2.0833 -4.7050 -1.1209 40 1 6.1444 -5.5964 -2.8749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485861661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:57 Heat of formation + Delta-G solvation = 22.358407 kcal Electronic energy + Delta-G solvation = -22635.791698 eV Core-core repulsion = 19451.435641 eV Total energy + Delta-G solvation = -3184.356057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69059 -38.95669 -36.15363 -34.48394 -33.66319 -32.18732 -31.64362 -29.24289 -27.65262 -27.09731 -25.94956 -23.90398 -23.11425 -22.21217 -20.25039 -19.41174 -17.71400 -17.25684 -16.68328 -16.23038 -15.65716 -14.89914 -14.70696 -14.43752 -14.15046 -13.70480 -13.30128 -13.15333 -13.06758 -12.77663 -12.68081 -12.49394 -12.34878 -12.25895 -12.02399 -11.79162 -11.52531 -11.37213 -10.70957 -10.54888 -10.44914 -10.00306 -9.82139 -9.78240 -9.37294 -9.22664 -8.90707 -8.73297 -8.28319 -7.04078 -5.58245 -2.90637 0.90987 1.23802 2.72643 3.24811 3.61543 3.67489 3.72018 3.78281 4.38371 4.58291 4.70596 4.84198 4.89782 4.95691 5.20665 5.30595 5.31127 5.41480 5.45080 5.49610 5.54611 5.67055 5.70922 5.84875 5.91037 5.92341 5.95447 6.02434 6.11252 6.22908 6.30380 6.50233 6.58786 6.73236 6.84467 7.09321 7.57794 7.97905 8.18961 8.39633 8.61659 9.44967 10.18400 10.38619 11.60140 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.008249 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.064729 B = 3393.431760 C = 4331.365425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.109 4.109 3 C -0.081 4.081 4 C -0.162 4.162 5 C 0.097 3.903 6 N -0.434 5.434 7 C 0.101 3.899 8 C 0.589 3.411 9 O -0.524 6.524 10 N -0.592 5.592 11 C 0.083 3.917 12 C 0.105 3.895 13 C 0.160 3.840 14 H 0.054 0.946 15 C -0.163 4.163 16 N -0.745 5.745 17 C -0.233 4.233 18 H 0.086 0.914 19 C 0.009 3.991 20 N -0.938 5.938 21 Si 0.876 3.124 22 H -0.283 1.283 23 H -0.298 1.298 24 H -0.270 1.270 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.373 0.627 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 14.776 10.709 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.112 4.112 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.062 4.062 6 N -0.143 5.143 7 C -0.039 4.039 8 C 0.375 3.625 9 O -0.399 6.399 10 N -0.323 5.323 11 C -0.061 4.061 12 C -0.018 4.018 13 C 0.049 3.951 14 H 0.072 0.928 15 C -0.224 4.224 16 N -0.391 5.391 17 C -0.363 4.363 18 H 0.104 0.896 19 C -0.186 4.186 20 N -0.587 5.587 21 Si 0.707 3.293 22 H -0.210 1.210 23 H -0.225 1.225 24 H -0.196 1.196 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.179 0.821 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.209 0.791 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.172 13.636 10.183 19.826 hybrid contribution -0.576 1.581 -1.022 1.969 sum -10.748 15.217 9.160 20.760 Atomic orbital electron populations 1.20838 0.89935 1.03920 1.02845 1.20808 0.97610 0.92811 0.99961 1.21399 0.94165 0.97614 0.97550 1.22311 0.95196 0.99721 1.00930 1.22937 1.00749 0.87166 0.95346 1.67813 1.06337 1.31340 1.08804 1.21016 0.90552 0.93354 0.98950 1.17755 0.78939 0.82398 0.83432 1.90775 1.47172 1.70398 1.31532 1.47463 1.58879 1.17627 1.08368 1.21742 0.98793 0.99899 0.85649 1.22014 0.96368 0.81305 1.02140 1.20603 0.92385 0.91275 0.90867 0.92836 1.22378 1.00692 0.99829 0.99515 1.42956 1.15434 1.62533 1.18183 1.19000 0.88994 1.25689 1.02647 0.89584 1.24531 0.95992 1.00206 0.97850 1.69709 1.11865 1.50269 1.26851 0.86638 0.79831 0.81427 0.81452 1.20985 1.22548 1.19616 0.90744 0.90228 0.90917 0.84473 0.84464 0.82082 0.93190 0.90434 0.91191 0.90269 0.89931 0.94230 0.93450 0.92068 0.79099 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.55 36.01 0.34 -1.00 16 2 C -0.11 -1.53 5.93 -104.09 -0.62 -2.15 16 3 C -0.08 -0.91 9.83 -39.31 -0.39 -1.30 16 4 C -0.16 -1.81 10.11 -39.32 -0.40 -2.21 16 5 C 0.10 1.43 11.18 -17.56 -0.20 1.23 16 6 N -0.43 -8.38 9.66 -9.79 -0.09 -8.48 16 7 C 0.10 1.84 4.95 -83.01 -0.41 1.43 16 8 C 0.59 11.77 5.27 -12.18 -0.06 11.71 16 9 O -0.52 -12.22 14.11 5.35 0.08 -12.15 16 10 N -0.59 -10.16 2.77 -182.57 -0.51 -10.66 16 11 C 0.08 1.10 10.23 59.85 0.61 1.71 16 12 C 0.10 1.73 5.13 -4.04 -0.02 1.71 16 13 C 0.16 3.23 3.20 -67.93 -0.22 3.01 16 14 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 15 C -0.16 -2.96 9.49 37.15 0.35 -2.60 16 16 N -0.75 -19.46 4.33 -53.42 -0.23 -19.69 16 17 C -0.23 -7.07 10.41 -15.06 -0.16 -7.23 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 20 N -0.94 -31.38 13.97 55.49 0.78 -30.60 16 21 Si 0.88 25.67 27.74 -169.99 -4.71 20.96 16 22 H -0.28 -8.45 7.11 56.52 0.40 -8.05 16 23 H -0.30 -8.66 7.11 56.52 0.40 -8.26 16 24 H -0.27 -7.92 6.52 56.52 0.37 -7.56 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.09 6.83 -51.93 -0.35 0.74 16 27 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 28 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 33 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 34 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.08 1.44 7.36 -51.93 -0.38 1.06 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.37 10.21 3.11 -40.82 -0.13 10.08 16 40 H 0.26 8.21 8.31 -40.82 -0.34 7.87 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -38.88 331.40 -6.81 -45.68 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.85 Total: 5.42 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.25 Total: 4.52 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.06 Total: -69.43 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -4.71 Total: 20.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -38.88 -6.81 -45.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485861661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.042 kcal (2) G-P(sol) polarization free energy of solvation -38.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds