Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38630 * 120.47232 * 2 1 4 4 C 1.38581 * 118.49091 * 179.76367 * 3 2 1 5 5 C 1.38607 * 119.34927 * 0.53749 * 4 3 2 6 6 N 1.31495 * 120.90342 * 359.70648 * 5 4 3 7 7 C 1.32747 * 121.63968 * 0.02562 * 6 5 4 8 8 C 1.48171 * 119.72333 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99767 * 256.00651 * 8 7 6 10 10 N 1.34776 * 120.00131 * 75.99915 * 8 7 6 11 11 C 1.46501 * 119.99727 * 5.26247 * 10 8 7 12 12 C 1.46497 * 120.00299 * 185.25670 * 10 8 7 13 13 C 1.53006 * 109.46958 * 90.00209 * 12 10 8 14 14 H 1.09005 * 109.47040 * 65.00165 * 13 12 10 15 15 C 1.52995 * 109.47133 * 185.00264 * 13 12 10 16 16 N 1.46498 * 109.47136 * 305.00447 * 13 12 10 17 17 C 1.36939 * 120.00072 * 154.99715 * 16 13 12 18 18 H 1.07995 * 120.00007 * 0.02562 * 17 16 13 19 19 C 1.38817 * 119.99863 * 179.97438 * 17 16 13 20 20 N 1.31616 * 119.99966 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99951 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47190 * 89.99690 * 21 19 17 23 23 H 1.48507 * 109.46800 * 209.99327 * 21 19 17 24 24 H 1.48498 * 109.47408 * 329.99148 * 21 19 17 25 25 H 1.09001 * 109.46862 * 264.53864 * 1 2 3 26 26 H 1.08998 * 109.47325 * 144.53914 * 1 2 3 27 27 H 1.08996 * 109.46902 * 24.53458 * 1 2 3 28 28 H 1.08001 * 120.74982 * 0.02573 * 3 2 1 29 29 H 1.07998 * 120.33013 * 180.26541 * 4 3 2 30 30 H 1.08004 * 119.54848 * 179.72191 * 5 4 3 31 31 H 1.09005 * 109.47233 * 84.75562 * 11 10 8 32 32 H 1.09004 * 109.47145 * 204.75672 * 11 10 8 33 33 H 1.08993 * 109.47485 * 324.75546 * 11 10 8 34 34 H 1.08996 * 109.47728 * 210.00187 * 12 10 8 35 35 H 1.08998 * 109.47141 * 330.00697 * 12 10 8 36 36 H 1.09001 * 109.47151 * 299.99798 * 15 13 12 37 37 H 1.09005 * 109.47239 * 60.00023 * 15 13 12 38 38 H 1.08999 * 109.47101 * 179.97438 * 15 13 12 39 39 H 0.97010 * 119.99987 * 334.99772 * 16 13 12 40 40 H 0.96994 * 120.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 0.0050 5 6 4.2322 -0.0840 -0.0015 6 7 3.5407 -1.2024 -0.0065 7 6 2.2133 -1.2004 -0.0061 8 6 1.4766 -2.4860 -0.0125 9 8 0.9535 -2.8814 -1.0356 10 7 1.3870 -3.2169 1.1163 11 6 1.9170 -2.6880 2.3754 12 6 0.7594 -4.5403 1.0842 13 6 1.8210 -5.6011 0.7861 14 1 2.5358 -5.6408 1.6082 15 6 1.1480 -6.9661 0.6291 16 7 2.5213 -5.2563 -0.4536 17 6 3.7942 -5.7123 -0.6705 18 1 4.2817 -6.3264 0.0722 19 6 4.4575 -5.3860 -1.8454 20 7 5.6807 -5.8247 -2.0541 21 14 3.6140 -4.3244 -3.1303 22 1 3.9067 -2.8939 -2.8602 23 1 4.1176 -4.6865 -4.4797 24 1 2.1472 -4.5491 -3.0728 25 1 -0.3633 -0.0978 1.0230 26 1 -0.3634 -0.8370 -0.5962 27 1 -0.3633 0.9349 -0.4267 28 1 1.6901 2.1414 0.0004 29 1 4.1723 2.0597 0.0095 30 1 5.3115 -0.1250 -0.0021 31 1 1.1671 -2.0527 2.8470 32 1 2.1637 -3.5147 3.0416 33 1 2.8144 -2.1029 2.1747 34 1 0.2995 -4.7480 2.0503 35 1 -0.0039 -4.5617 0.3063 36 1 0.6270 -7.2226 1.5515 37 1 0.4333 -6.9264 -0.1929 38 1 1.9043 -7.7217 0.4164 39 1 2.0833 -4.7050 -1.1209 40 1 6.1444 -5.5964 -2.8749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485861661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -6.163958 kcal Electronic energy + Delta-G solvation = -22637.028521 eV Core-core repulsion = 19451.435641 eV Total energy + Delta-G solvation = -3185.592880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87183 -40.24258 -37.79137 -36.13442 -34.67945 -34.09186 -32.97375 -31.24462 -28.71785 -28.27310 -27.16728 -25.54345 -24.82862 -23.23406 -21.82447 -20.86515 -19.77337 -18.61484 -17.86922 -17.60504 -16.89622 -16.53109 -16.31153 -15.74981 -15.46900 -15.24180 -14.79735 -14.56888 -14.38633 -14.19624 -13.99586 -13.83261 -13.61656 -13.44532 -13.39490 -13.19492 -13.02557 -12.81302 -12.72622 -12.41136 -12.25185 -11.85419 -11.81910 -11.33968 -11.04804 -10.79055 -10.37693 -9.96263 -9.66272 -9.26511 -8.07128 -5.32610 -0.13060 0.26629 1.20383 1.28202 1.34112 1.42047 2.01545 2.41547 2.65988 3.24488 3.27329 3.62125 3.67483 3.81615 3.95677 4.03447 4.08207 4.20208 4.32808 4.48418 4.48722 4.53266 4.61909 4.64728 4.67360 4.70244 4.81603 4.87106 5.00722 5.06841 5.10183 5.17035 5.22393 5.39983 5.61235 5.66725 5.76566 6.19671 6.26006 6.88743 7.02449 7.10419 7.91841 8.06736 9.15250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.008249 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.064729 B = 3393.431760 C = 4331.365425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C -0.072 4.072 4 C -0.139 4.139 5 C 0.072 3.928 6 N -0.494 5.494 7 C 0.062 3.938 8 C 0.580 3.420 9 O -0.574 6.574 10 N -0.593 5.593 11 C 0.080 3.920 12 C 0.109 3.891 13 C 0.146 3.854 14 H 0.051 0.949 15 C -0.153 4.153 16 N -0.754 5.754 17 C -0.205 4.205 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.978 5.978 21 Si 0.934 3.066 22 H -0.297 1.297 23 H -0.295 1.295 24 H -0.275 1.275 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.185 0.815 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.368 0.632 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.542 17.360 12.594 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.113 4.113 3 C -0.098 4.098 4 C -0.159 4.159 5 C -0.087 4.087 6 N -0.204 5.204 7 C -0.077 4.077 8 C 0.367 3.633 9 O -0.453 6.453 10 N -0.323 5.323 11 C -0.062 4.062 12 C -0.013 4.013 13 C 0.038 3.962 14 H 0.069 0.931 15 C -0.213 4.213 16 N -0.400 5.400 17 C -0.336 4.336 18 H 0.084 0.916 19 C -0.241 4.241 20 N -0.631 5.631 21 Si 0.766 3.234 22 H -0.225 1.225 23 H -0.222 1.222 24 H -0.201 1.201 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.121 0.879 28 H 0.202 0.798 29 H 0.199 0.801 30 H 0.187 0.813 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.203 0.797 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.232 16.213 12.141 23.662 hybrid contribution 0.041 0.822 -1.441 1.659 sum -12.192 17.035 10.700 23.522 Atomic orbital electron populations 1.20876 0.88278 1.04201 1.03769 1.21159 0.98886 0.92444 0.98778 1.21953 0.94186 0.98283 0.95358 1.22734 0.95720 0.99721 0.97696 1.23291 1.01338 0.87832 0.96245 1.67616 1.07547 1.34163 1.11096 1.20908 0.90534 0.93819 1.02405 1.18286 0.78426 0.83315 0.83298 1.90713 1.49414 1.71864 1.33302 1.47667 1.58159 1.17405 1.09044 1.21951 0.99159 1.00803 0.84286 1.22037 0.94693 0.79982 1.04618 1.21016 0.93281 0.93825 0.88128 0.93067 1.22213 0.99929 0.97305 1.01897 1.43129 1.14270 1.62311 1.20295 1.19055 0.90292 1.23078 1.01173 0.91633 1.25045 0.96774 1.02409 0.99887 1.69809 1.13187 1.52550 1.27531 0.85711 0.78571 0.79252 0.79869 1.22452 1.22166 1.20053 0.88734 0.93258 0.87875 0.79810 0.80059 0.81294 0.89567 0.88840 0.93026 0.84870 0.90995 0.89342 0.93822 0.94709 0.79696 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 9.55 71.24 0.68 -1.64 16 2 C -0.11 -2.86 5.93 -19.52 -0.12 -2.97 16 3 C -0.07 -1.33 9.83 22.45 0.22 -1.11 16 4 C -0.14 -2.66 10.11 22.44 0.23 -2.43 16 5 C 0.07 2.08 11.18 84.83 0.95 3.02 16 6 N -0.49 -19.46 9.66 -184.89 -1.79 -21.24 16 7 C 0.06 2.25 4.95 41.90 0.21 2.45 16 8 C 0.58 23.38 5.27 86.88 0.46 23.84 16 9 O -0.57 -27.57 14.11 -3.76 -0.05 -27.62 16 10 N -0.59 -19.78 2.77 -849.82 -2.36 -22.14 16 11 C 0.08 1.99 10.23 127.77 1.31 3.29 16 12 C 0.11 3.41 5.13 86.38 0.44 3.85 16 13 C 0.15 5.79 3.20 44.99 0.14 5.93 16 14 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 15 C -0.15 -5.30 9.49 71.98 0.68 -4.62 16 16 N -0.75 -40.01 4.33 -322.93 -1.40 -41.41 16 17 C -0.20 -12.74 10.41 84.03 0.87 -11.87 16 18 H 0.07 4.30 8.06 -2.91 -0.02 4.28 16 19 C -0.05 -3.27 5.50 84.86 0.47 -2.80 16 20 N -0.98 -67.54 13.97 21.65 0.30 -67.24 16 21 Si 0.93 55.70 27.74 68.60 1.90 57.60 16 22 H -0.30 -18.18 7.11 99.48 0.71 -17.47 16 23 H -0.29 -17.11 7.11 99.48 0.71 -16.40 16 24 H -0.27 -16.34 6.52 99.48 0.65 -15.69 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.33 6.83 -2.39 -0.02 1.31 16 27 H 0.10 1.42 8.06 -2.39 -0.02 1.40 16 28 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 29 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.09 1.50 8.14 -2.38 -0.02 1.49 16 32 H 0.09 1.97 8.03 -2.38 -0.02 1.95 16 33 H 0.05 1.50 6.51 -2.39 -0.02 1.49 16 34 H 0.13 2.70 8.07 -2.39 -0.02 2.68 16 35 H 0.07 2.44 7.36 -2.39 -0.02 2.42 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.37 20.55 3.11 -92.70 -0.29 20.26 16 40 H 0.25 16.86 8.31 -92.71 -0.77 16.09 16 Total: -1.00 -90.99 331.40 3.84 -87.15 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.69 Total: 19.96 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.54 Total: 14.95 kcal Atomic # 7 Polarization: -146.79 SS G_CDS: -5.24 Total: -152.03 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 55.70 SS G_CDS: 1.90 Total: 57.60 kcal Total: -90.99 3.84 -87.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485861661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.985 kcal (2) G-P(sol) polarization free energy of solvation -90.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds