Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38636 * 120.47224 * 2 1 4 4 C 1.38579 * 118.49119 * 180.25123 * 3 2 1 5 5 C 1.38602 * 119.34966 * 0.04060 * 4 3 2 6 6 N 1.31493 * 120.90622 * 359.95792 * 5 4 3 7 7 C 1.32749 * 121.64036 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72619 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99769 * 104.39333 * 8 7 6 10 10 N 1.34771 * 120.00222 * 284.39867 * 8 7 6 11 11 C 1.46505 * 119.99762 * 4.97557 * 10 8 7 12 12 C 1.46502 * 120.00341 * 184.97536 * 10 8 7 13 13 C 1.53000 * 109.46759 * 89.99733 * 12 10 8 14 14 H 1.09003 * 109.47585 * 294.99932 * 13 12 10 15 15 C 1.53002 * 109.46804 * 175.00015 * 13 12 10 16 16 N 1.46497 * 109.47465 * 55.00350 * 13 12 10 17 17 C 1.36932 * 120.00551 * 204.99858 * 16 13 12 18 18 H 1.08002 * 119.99757 * 359.97438 * 17 16 13 19 19 C 1.38811 * 120.00598 * 180.02562 * 17 16 13 20 20 N 1.31617 * 119.99701 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00417 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47250 * 119.99583 * 21 19 17 24 24 H 1.48493 * 109.47025 * 239.99903 * 21 19 17 25 25 H 1.09003 * 109.47008 * 264.62392 * 1 2 3 26 26 H 1.08999 * 109.46837 * 24.61586 * 1 2 3 27 27 H 1.09000 * 109.46935 * 144.62158 * 1 2 3 28 28 H 1.08003 * 120.75088 * 0.24901 * 3 2 1 29 29 H 1.08000 * 120.32883 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.54925 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47039 * 84.69578 * 11 10 8 32 32 H 1.09000 * 109.46774 * 204.69528 * 11 10 8 33 33 H 1.08995 * 109.47199 * 324.69120 * 11 10 8 34 34 H 1.08991 * 109.47068 * 209.99682 * 12 10 8 35 35 H 1.08998 * 109.46694 * 330.00094 * 12 10 8 36 36 H 1.09003 * 109.46926 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.47591 * 300.00021 * 15 13 12 38 38 H 1.09004 * 109.46742 * 60.00280 * 15 13 12 39 39 H 0.97007 * 120.00021 * 24.99441 * 16 13 12 40 40 H 0.96999 * 120.00360 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1470 -0.0053 5 6 4.2322 -0.0839 -0.0113 6 7 3.5407 -1.2024 -0.0112 7 6 2.2133 -1.2004 -0.0058 8 6 1.4766 -2.4860 -0.0065 9 8 0.9518 -2.8860 1.0138 10 7 1.3889 -3.2118 -1.1386 11 6 2.1119 -2.7860 -2.3396 12 6 0.5706 -4.4266 -1.1685 13 6 -0.8564 -4.0700 -1.5900 14 1 -1.3115 -3.4343 -0.8304 15 6 -1.6785 -5.3514 -1.7420 16 7 -0.8239 -3.3561 -2.8688 17 6 -1.8434 -2.5059 -3.2045 18 1 -2.6718 -2.3620 -2.5267 19 6 -1.8129 -1.8299 -4.4165 20 7 -0.8037 -2.0057 -5.2428 21 14 -3.2035 -0.6696 -4.8741 22 1 -4.2096 -0.6478 -3.7821 23 1 -2.6610 0.6981 -5.0754 24 1 -3.8455 -1.1371 -6.1289 25 1 -0.3633 -0.0963 1.0232 26 1 -0.3633 0.9343 -0.4281 27 1 -0.3633 -0.8379 -0.5950 28 1 1.6901 2.1415 0.0040 29 1 4.1723 2.0597 -0.0051 30 1 5.3114 -0.1250 -0.0159 31 1 3.1355 -3.1583 -2.2986 32 1 1.6150 -3.1857 -3.2236 33 1 2.1229 -1.6973 -2.3902 34 1 0.9945 -5.1328 -1.8823 35 1 0.5543 -4.8781 -0.1765 36 1 -2.6952 -5.0973 -2.0418 37 1 -1.2235 -5.9871 -2.5015 38 1 -1.7027 -5.8826 -0.7904 39 1 -0.0800 -3.4856 -3.4778 40 1 -0.7824 -1.5336 -6.0899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485861662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = 14.733656 kcal Electronic energy + Delta-G solvation = -22355.760921 eV Core-core repulsion = 19171.074230 eV Total energy + Delta-G solvation = -3184.686691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62281 -38.85364 -36.29539 -34.19780 -33.54672 -32.29442 -31.68704 -28.87149 -27.49016 -26.76294 -25.89147 -24.07239 -23.31637 -22.12898 -20.38219 -19.36498 -17.35527 -17.18453 -16.70986 -16.08189 -15.58385 -14.94790 -14.61114 -14.40161 -13.99421 -13.75098 -13.32993 -13.17932 -13.07727 -12.57351 -12.45804 -12.30486 -12.25152 -12.11323 -11.75725 -11.58832 -11.37198 -11.27950 -10.89394 -10.71401 -10.38529 -10.05333 -9.97892 -9.76776 -9.64757 -9.31708 -8.95587 -8.82732 -8.16542 -6.96745 -5.80007 -3.06795 0.95528 1.26522 2.82801 3.27025 3.39432 3.46725 3.47744 3.76361 4.38692 4.56797 4.73856 4.77755 4.97032 5.03202 5.33380 5.47889 5.53039 5.58079 5.60397 5.69947 5.75096 5.86122 5.90210 5.96600 6.05685 6.13596 6.24645 6.27341 6.32102 6.36418 6.37464 6.64441 6.69265 6.81285 6.85421 7.14093 7.67773 7.72472 7.87180 8.39125 8.43240 9.50623 10.07072 10.42817 11.42919 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.006790 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.111937 B = 4122.871288 C = 5074.184707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C -0.080 4.080 4 C -0.160 4.160 5 C 0.088 3.912 6 N -0.457 5.457 7 C 0.100 3.900 8 C 0.582 3.418 9 O -0.539 6.539 10 N -0.580 5.580 11 C 0.091 3.909 12 C 0.108 3.892 13 C 0.154 3.846 14 H 0.051 0.949 15 C -0.162 4.162 16 N -0.720 5.720 17 C -0.230 4.230 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.381 0.619 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 3.476 8.518 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.090 4.090 3 C -0.106 4.106 4 C -0.180 4.180 5 C -0.071 4.071 6 N -0.167 5.167 7 C -0.039 4.039 8 C 0.367 3.633 9 O -0.416 6.416 10 N -0.310 5.310 11 C -0.052 4.052 12 C -0.015 4.015 13 C 0.043 3.957 14 H 0.069 0.931 15 C -0.222 4.222 16 N -0.363 5.363 17 C -0.361 4.361 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.217 0.783 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.537 2.532 9.024 12.678 hybrid contribution -0.881 1.614 -0.768 1.993 sum 7.656 4.146 8.256 11.999 Atomic orbital electron populations 1.20867 0.89206 1.04496 1.03100 1.20873 0.98148 0.92492 0.97465 1.21484 0.94143 0.97965 0.96980 1.22253 0.95207 0.99647 1.00902 1.22726 1.00214 0.87439 0.96700 1.67634 1.06680 1.31647 1.10704 1.20959 0.90162 0.93671 0.99103 1.17788 0.79387 0.82581 0.83554 1.90750 1.48521 1.69998 1.32331 1.47497 1.47018 1.25407 1.11057 1.21786 0.95202 1.00682 0.87528 1.21937 0.91891 0.85379 1.02281 1.20674 0.92083 0.92850 0.90063 0.93102 1.22361 1.01567 0.98821 0.99494 1.42483 1.25962 1.51128 1.16763 1.19253 0.99586 1.16583 1.00677 0.91333 1.24656 0.98112 1.00902 0.97192 1.69636 1.31256 1.46584 1.10784 0.86199 0.81747 0.80726 0.78061 1.20642 1.22035 1.21981 0.90474 0.90863 0.89559 0.84335 0.84582 0.82412 0.93203 0.89157 0.92024 0.90590 0.89860 0.92526 0.93402 0.94248 0.78343 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.55 36.01 0.34 -1.55 16 2 C -0.09 -1.37 5.93 -104.09 -0.62 -1.99 16 3 C -0.08 -0.99 9.83 -39.31 -0.39 -1.38 16 4 C -0.16 -1.74 10.11 -39.32 -0.40 -2.14 16 5 C 0.09 1.08 11.18 -17.56 -0.20 0.88 16 6 N -0.46 -7.29 10.23 -9.79 -0.10 -7.39 16 7 C 0.10 1.75 4.70 -83.01 -0.39 1.36 16 8 C 0.58 11.22 5.86 -12.18 -0.07 11.15 16 9 O -0.54 -11.57 16.66 5.35 0.09 -11.48 16 10 N -0.58 -10.60 2.73 -182.57 -0.50 -11.09 16 11 C 0.09 1.59 9.71 59.85 0.58 2.17 16 12 C 0.11 1.89 5.07 -4.04 -0.02 1.87 16 13 C 0.15 3.07 3.20 -67.93 -0.22 2.85 16 14 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 15 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 16 N -0.72 -16.93 4.57 -53.43 -0.24 -17.17 16 17 C -0.23 -6.07 9.93 -15.06 -0.15 -6.22 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 21 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 27 H 0.09 1.65 7.29 -51.93 -0.38 1.27 16 28 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.70 5.76 -51.93 -0.30 1.40 16 33 H 0.06 1.13 7.00 -51.93 -0.36 0.77 16 34 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.08 1.42 7.36 -51.93 -0.38 1.04 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.38 9.31 5.40 -40.82 -0.22 9.09 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -31.32 336.21 -7.08 -38.40 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.83 Total: 8.74 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.26 Total: 4.02 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.12 Total: -61.56 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.32 -7.08 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485861662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.136 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds