Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38636 * 120.47224 * 2 1 4 4 C 1.38579 * 118.49119 * 180.25123 * 3 2 1 5 5 C 1.38602 * 119.34966 * 0.04060 * 4 3 2 6 6 N 1.31493 * 120.90622 * 359.95792 * 5 4 3 7 7 C 1.32749 * 121.64036 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72619 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99769 * 104.39333 * 8 7 6 10 10 N 1.34771 * 120.00222 * 284.39867 * 8 7 6 11 11 C 1.46505 * 119.99762 * 4.97557 * 10 8 7 12 12 C 1.46502 * 120.00341 * 184.97536 * 10 8 7 13 13 C 1.53000 * 109.46759 * 89.99733 * 12 10 8 14 14 H 1.09003 * 109.47585 * 294.99932 * 13 12 10 15 15 C 1.53002 * 109.46804 * 175.00015 * 13 12 10 16 16 N 1.46497 * 109.47465 * 55.00350 * 13 12 10 17 17 C 1.36932 * 120.00551 * 204.99858 * 16 13 12 18 18 H 1.08002 * 119.99757 * 359.97438 * 17 16 13 19 19 C 1.38811 * 120.00598 * 180.02562 * 17 16 13 20 20 N 1.31617 * 119.99701 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00417 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47250 * 119.99583 * 21 19 17 24 24 H 1.48493 * 109.47025 * 239.99903 * 21 19 17 25 25 H 1.09003 * 109.47008 * 264.62392 * 1 2 3 26 26 H 1.08999 * 109.46837 * 24.61586 * 1 2 3 27 27 H 1.09000 * 109.46935 * 144.62158 * 1 2 3 28 28 H 1.08003 * 120.75088 * 0.24901 * 3 2 1 29 29 H 1.08000 * 120.32883 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.54925 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47039 * 84.69578 * 11 10 8 32 32 H 1.09000 * 109.46774 * 204.69528 * 11 10 8 33 33 H 1.08995 * 109.47199 * 324.69120 * 11 10 8 34 34 H 1.08991 * 109.47068 * 209.99682 * 12 10 8 35 35 H 1.08998 * 109.46694 * 330.00094 * 12 10 8 36 36 H 1.09003 * 109.46926 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.47591 * 300.00021 * 15 13 12 38 38 H 1.09004 * 109.46742 * 60.00280 * 15 13 12 39 39 H 0.97007 * 120.00021 * 24.99441 * 16 13 12 40 40 H 0.96999 * 120.00360 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1470 -0.0053 5 6 4.2322 -0.0839 -0.0113 6 7 3.5407 -1.2024 -0.0112 7 6 2.2133 -1.2004 -0.0058 8 6 1.4766 -2.4860 -0.0065 9 8 0.9518 -2.8860 1.0138 10 7 1.3889 -3.2118 -1.1386 11 6 2.1119 -2.7860 -2.3396 12 6 0.5706 -4.4266 -1.1685 13 6 -0.8564 -4.0700 -1.5900 14 1 -1.3115 -3.4343 -0.8304 15 6 -1.6785 -5.3514 -1.7420 16 7 -0.8239 -3.3561 -2.8688 17 6 -1.8434 -2.5059 -3.2045 18 1 -2.6718 -2.3620 -2.5267 19 6 -1.8129 -1.8299 -4.4165 20 7 -0.8037 -2.0057 -5.2428 21 14 -3.2035 -0.6696 -4.8741 22 1 -4.2096 -0.6478 -3.7821 23 1 -2.6610 0.6981 -5.0754 24 1 -3.8455 -1.1371 -6.1289 25 1 -0.3633 -0.0963 1.0232 26 1 -0.3633 0.9343 -0.4281 27 1 -0.3633 -0.8379 -0.5950 28 1 1.6901 2.1415 0.0040 29 1 4.1723 2.0597 -0.0051 30 1 5.3114 -0.1250 -0.0159 31 1 3.1355 -3.1583 -2.2986 32 1 1.6150 -3.1857 -3.2236 33 1 2.1229 -1.6973 -2.3902 34 1 0.9945 -5.1328 -1.8823 35 1 0.5543 -4.8781 -0.1765 36 1 -2.6952 -5.0973 -2.0418 37 1 -1.2235 -5.9871 -2.5015 38 1 -1.7027 -5.8826 -0.7904 39 1 -0.0800 -3.4856 -3.4778 40 1 -0.7824 -1.5336 -6.0899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485861662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -5.428870 kcal Electronic energy + Delta-G solvation = -22356.635234 eV Core-core repulsion = 19171.074230 eV Total energy + Delta-G solvation = -3185.561004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83133 -40.17398 -37.93051 -35.85594 -34.66125 -34.01763 -32.91621 -30.71367 -28.72754 -28.19035 -27.25005 -25.80348 -24.75873 -23.21907 -21.92439 -20.77276 -19.26622 -18.60478 -17.87959 -17.51234 -16.72075 -16.56662 -16.16055 -15.80300 -15.47072 -15.20205 -14.89264 -14.65457 -14.07524 -13.92962 -13.84613 -13.77408 -13.71980 -13.49618 -13.31272 -13.08634 -12.82792 -12.75746 -12.72597 -12.49962 -12.16014 -11.87525 -11.62178 -11.32899 -10.96293 -10.77330 -10.46931 -9.92760 -9.67860 -8.93918 -7.90123 -5.15609 -0.10772 0.26171 1.40133 1.45449 1.47835 1.55811 1.93090 2.57457 2.71398 3.15892 3.44115 3.63185 3.81977 3.86097 3.97964 4.05091 4.08401 4.19350 4.37072 4.45484 4.49395 4.56927 4.59431 4.67169 4.70143 4.71507 4.82613 4.89688 5.07061 5.10478 5.12482 5.21771 5.25372 5.34238 5.55141 5.61937 5.67180 6.24781 6.33353 6.81086 6.98548 7.39939 8.12091 8.40246 9.32688 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.006790 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.111937 B = 4122.871288 C = 5074.184707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.079 4.079 4 C -0.141 4.141 5 C 0.085 3.915 6 N -0.481 5.481 7 C 0.069 3.931 8 C 0.577 3.423 9 O -0.573 6.573 10 N -0.583 5.583 11 C 0.104 3.896 12 C 0.112 3.888 13 C 0.154 3.846 14 H 0.026 0.974 15 C -0.152 4.152 16 N -0.724 5.724 17 C -0.227 4.227 18 H 0.062 0.938 19 C -0.064 4.064 20 N -0.960 5.960 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.296 1.296 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.169 0.831 29 H 0.183 0.817 30 H 0.195 0.805 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.377 0.623 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.901 4.852 8.932 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.113 4.113 3 C -0.105 4.105 4 C -0.160 4.160 5 C -0.074 4.074 6 N -0.192 5.192 7 C -0.069 4.069 8 C 0.363 3.637 9 O -0.453 6.453 10 N -0.312 5.312 11 C -0.039 4.039 12 C -0.011 4.011 13 C 0.044 3.956 14 H 0.044 0.956 15 C -0.212 4.212 16 N -0.366 5.366 17 C -0.359 4.359 18 H 0.080 0.920 19 C -0.257 4.257 20 N -0.611 5.611 21 Si 0.788 3.212 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.224 1.224 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.187 0.813 29 H 0.201 0.799 30 H 0.212 0.788 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.211 0.789 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.886 3.885 9.457 14.222 hybrid contribution -1.217 1.227 -0.825 1.915 sum 8.669 5.112 8.632 13.259 Atomic orbital electron populations 1.20740 0.90169 1.03463 1.02488 1.20976 0.97806 0.93496 0.99068 1.21891 0.95149 0.97735 0.95727 1.22762 0.94689 1.00884 0.97667 1.23471 1.01824 0.87104 0.95030 1.67591 1.06008 1.33790 1.11806 1.20709 0.91071 0.92980 1.02149 1.18254 0.79030 0.83251 0.83122 1.90699 1.50094 1.71074 1.33403 1.47611 1.46885 1.25515 1.11156 1.21658 0.96008 0.99763 0.86450 1.21920 0.90419 0.85684 1.03088 1.20772 0.93986 0.93013 0.87810 0.95629 1.22204 0.99932 0.97779 1.01270 1.42536 1.25149 1.51202 1.17762 1.19439 0.99759 1.16412 1.00316 0.91956 1.25265 1.00233 1.02723 0.97472 1.69759 1.32710 1.47689 1.10925 0.85306 0.79544 0.78845 0.77506 1.19906 1.22079 1.22357 0.90359 0.89073 0.93840 0.81345 0.79947 0.78792 0.90967 0.90734 0.93351 0.88477 0.89231 0.94233 0.92614 0.91405 0.78863 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 9.55 71.24 0.68 -2.94 16 2 C -0.11 -3.45 5.93 -19.52 -0.12 -3.57 16 3 C -0.08 -1.76 9.83 22.45 0.22 -1.54 16 4 C -0.14 -2.47 10.11 22.44 0.23 -2.24 16 5 C 0.08 1.82 11.18 84.83 0.95 2.77 16 6 N -0.48 -14.84 10.23 -184.90 -1.89 -16.73 16 7 C 0.07 2.41 4.70 41.90 0.20 2.60 16 8 C 0.58 22.95 5.86 86.88 0.51 23.46 16 9 O -0.57 -25.58 16.66 -3.76 -0.06 -25.64 16 10 N -0.58 -21.74 2.73 -849.84 -2.32 -24.06 16 11 C 0.10 3.67 9.71 127.77 1.24 4.92 16 12 C 0.11 3.93 5.07 86.38 0.44 4.37 16 13 C 0.15 6.23 3.20 44.99 0.14 6.38 16 14 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 15 C -0.15 -5.34 9.49 71.98 0.68 -4.66 16 16 N -0.72 -34.78 4.57 -322.94 -1.47 -36.26 16 17 C -0.23 -12.25 9.93 84.03 0.83 -11.42 16 18 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 19 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 20 N -0.96 -55.51 13.06 21.65 0.28 -55.22 16 21 Si 0.96 45.31 29.55 68.60 2.03 47.34 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 27 H 0.04 1.76 7.29 -2.39 -0.02 1.74 16 28 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.86 5.76 -2.39 -0.01 2.85 16 33 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 34 H 0.10 2.99 8.07 -2.39 -0.02 2.97 16 35 H 0.09 3.06 7.36 -2.39 -0.02 3.04 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 39 H 0.38 18.79 5.40 -92.70 -0.50 18.29 16 40 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -69.88 336.21 3.57 -66.31 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.54 Total: 29.22 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.47 Total: 15.05 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -5.40 Total: -132.28 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.06 Total: -25.64 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.88 3.57 -66.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485861662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.879 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds