Wall clock time and date at job start Mon Mar 30 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38606 * 120.32312 * 2 1 4 4 N 1.31495 * 120.90268 * 179.74640 * 3 2 1 5 5 C 1.32753 * 121.63783 * 0.56172 * 4 3 2 6 6 C 1.48166 * 119.71821 * 179.70806 * 5 4 3 7 7 O 1.21518 * 119.99899 * 186.17439 * 6 5 4 8 8 N 1.34774 * 120.00404 * 6.18047 * 6 5 4 9 9 C 1.46504 * 119.99825 * 5.59526 * 8 6 5 10 10 C 1.46501 * 120.00433 * 185.32724 * 8 6 5 11 11 C 1.52996 * 109.46783 * 270.27691 * 10 8 6 12 12 N 1.46503 * 109.47167 * 180.02562 * 11 10 8 13 13 C 1.36939 * 120.00085 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99717 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99829 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00016 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99964 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47213 * 90.00297 * 17 15 13 19 19 H 1.48506 * 109.46798 * 210.00234 * 17 15 13 20 20 H 1.48495 * 109.47471 * 329.99793 * 17 15 13 21 21 C 1.39261 * 120.55473 * 359.44266 * 5 4 3 22 22 C 1.38577 * 120.32915 * 180.02562 * 2 1 3 23 23 C 1.50707 * 120.74950 * 359.95786 * 22 2 1 24 24 H 1.09007 * 109.46884 * 269.97741 * 1 2 3 25 25 H 1.09000 * 109.47237 * 29.97788 * 1 2 3 26 26 H 1.08997 * 109.47042 * 149.97993 * 1 2 3 27 27 H 1.07998 * 119.55135 * 0.04130 * 3 2 1 28 28 H 1.08995 * 109.47200 * 275.13971 * 9 8 6 29 29 H 1.09001 * 109.47175 * 35.14553 * 9 8 6 30 30 H 1.08997 * 109.46954 * 155.14280 * 9 8 6 31 31 H 1.09002 * 109.46695 * 30.26520 * 10 8 6 32 32 H 1.08987 * 109.47508 * 150.27104 * 10 8 6 33 33 H 1.09007 * 109.46995 * 299.98976 * 11 10 8 34 34 H 1.08990 * 109.48062 * 59.99327 * 11 10 8 35 35 H 0.96996 * 119.99576 * 359.97438 * 12 11 10 36 36 H 0.97001 * 120.00083 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.47028 * 180.29776 * 21 5 4 38 38 H 1.09006 * 109.46882 * 270.01798 * 23 22 2 39 39 H 1.08990 * 109.47581 * 30.02159 * 23 22 2 40 40 H 1.09002 * 109.46767 * 150.02387 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 0.0050 5 6 4.2295 0.0866 -0.0009 6 6 5.7097 0.1513 -0.0014 7 8 6.3623 -0.8669 -0.1199 8 7 6.3325 1.3393 0.1296 9 6 5.5517 2.5502 0.3952 10 6 7.7906 1.4190 0.0123 11 6 8.4247 1.2170 1.3900 12 7 9.8829 1.2973 1.2729 13 6 10.6684 1.1463 2.3844 14 1 10.2129 0.9685 3.3473 15 6 12.0500 1.2219 2.2733 16 7 12.8050 1.0773 3.3416 17 14 12.8377 1.5288 0.6075 18 1 12.9892 2.9904 0.3933 19 1 14.1733 0.8810 0.5647 20 1 11.9768 0.9588 -0.4598 21 6 3.5923 -1.1517 -0.0010 22 6 2.2068 -1.1961 -0.0005 23 6 1.4779 -2.5152 -0.0002 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6648 2.1305 0.0007 28 1 5.1868 2.9610 -0.5461 29 1 4.7055 2.3036 1.0365 30 1 6.1821 3.2870 0.8930 31 1 8.1433 0.6431 -0.6672 32 1 8.0709 2.3977 -0.3768 33 1 8.0720 1.9929 2.0696 34 1 8.1445 0.2383 1.7792 35 1 10.2918 1.4574 0.4080 36 1 13.7704 1.1297 3.2640 37 1 4.1695 -2.0646 -0.0009 38 1 1.3026 -2.8331 1.0276 39 1 0.5232 -2.4030 -0.5137 40 1 2.0811 -3.2637 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493640957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:18 Heat of formation + Delta-G solvation = 27.324268 kcal Electronic energy + Delta-G solvation = -20909.666121 eV Core-core repulsion = 17725.525400 eV Total energy + Delta-G solvation = -3184.140721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02294 -39.21495 -36.03629 -35.12174 -34.21581 -32.72030 -31.47293 -29.13117 -28.62000 -27.33135 -26.33437 -24.01701 -23.07827 -22.30624 -21.26956 -19.53247 -17.69240 -17.36645 -16.95119 -15.79347 -15.69461 -15.45546 -15.05471 -14.73568 -14.31448 -13.83126 -13.67955 -13.45096 -13.32918 -13.28364 -13.12950 -12.96515 -12.76686 -12.57451 -12.43881 -12.00036 -11.80275 -11.50242 -11.08368 -11.02604 -10.69477 -10.21768 -10.11252 -9.76649 -9.55298 -9.38910 -9.22313 -8.84324 -8.45839 -7.18899 -5.71446 -3.07338 0.43248 0.91522 2.67996 3.00387 3.42599 3.45785 3.49876 3.64460 3.94040 4.28658 4.35238 4.49325 4.51940 4.64507 4.89421 5.02155 5.08854 5.16312 5.24508 5.34749 5.37970 5.44051 5.53190 5.55480 5.59138 5.61158 5.72777 5.76099 5.87927 5.95235 6.00435 6.06989 6.35368 6.56634 6.70170 6.89053 7.40455 7.55548 8.04060 8.21761 8.46973 9.25701 9.97851 10.17561 11.47016 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.003221 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.017156 B = 8690.344457 C = 8949.239013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C 0.094 3.906 4 N -0.451 5.451 5 C 0.081 3.919 6 C 0.563 3.437 7 O -0.527 6.527 8 N -0.591 5.591 9 C 0.090 3.910 10 C 0.104 3.896 11 C 0.146 3.854 12 N -0.754 5.754 13 C -0.241 4.241 14 H 0.090 0.910 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.276 1.276 21 C -0.107 4.107 22 C -0.053 4.053 23 C -0.119 4.119 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.425 -0.692 -9.483 30.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.065 4.065 4 N -0.163 5.163 5 C -0.056 4.056 6 C 0.349 3.651 7 O -0.403 6.403 8 N -0.323 5.323 9 C -0.053 4.053 10 C -0.019 4.019 11 C 0.018 3.982 12 N -0.400 5.400 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.192 4.192 16 N -0.583 5.583 17 Si 0.716 3.284 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.202 1.202 21 C -0.128 4.128 22 C -0.061 4.061 23 C -0.175 4.175 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.178 0.822 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.499 -0.473 -9.305 29.983 hybrid contribution 0.276 -0.420 -1.042 1.157 sum -28.223 -0.893 -10.347 30.073 Atomic orbital electron populations 1.20821 0.90035 1.03397 1.02885 1.21009 0.97691 0.93694 1.00077 1.22799 0.89742 0.97577 0.96406 1.68112 1.08026 1.29517 1.10595 1.21160 0.94320 0.89610 1.00541 1.17931 0.85750 0.83701 0.77687 1.90820 1.65743 1.33797 1.49974 1.47634 1.07542 1.07895 1.69223 1.22109 0.95807 0.85727 1.01635 1.21797 0.77706 1.02767 0.99614 1.20898 0.84541 0.99113 0.93646 1.42566 1.00801 1.88924 1.07687 1.19043 0.88361 1.41434 0.88273 0.89248 1.24670 0.95861 1.01939 0.96765 1.69705 1.04250 1.57021 1.27365 0.86518 0.78950 0.77971 0.84984 1.21047 1.21688 1.20213 1.22018 0.94129 0.99196 0.97472 1.20199 0.93227 0.95880 0.96756 1.20889 1.00379 0.93054 1.03196 0.90513 0.90958 0.90844 0.82171 0.92446 0.89259 0.91862 0.89849 0.90228 0.95437 0.94985 0.80672 0.93073 0.83433 0.90221 0.90580 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.65 36.01 0.35 -0.14 16 2 C -0.12 -0.94 5.91 -104.36 -0.62 -1.55 16 3 C 0.09 0.81 10.86 -17.56 -0.19 0.62 16 4 N -0.45 -5.18 6.17 -9.80 -0.06 -5.24 16 5 C 0.08 1.09 6.57 -83.01 -0.55 0.55 16 6 C 0.56 9.40 7.64 -12.18 -0.09 9.31 16 7 O -0.53 -10.51 15.98 5.35 0.09 -10.42 16 8 N -0.59 -9.28 2.87 -182.58 -0.52 -9.80 16 9 C 0.09 1.10 9.12 59.85 0.55 1.65 16 10 C 0.10 1.82 5.45 -4.04 -0.02 1.79 16 11 C 0.15 3.14 6.58 -4.04 -0.03 3.12 16 12 N -0.75 -19.18 5.41 -59.91 -0.32 -19.51 16 13 C -0.24 -7.21 10.47 -15.06 -0.16 -7.37 16 14 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 15 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 16 N -0.94 -30.33 13.97 55.49 0.78 -29.55 16 17 Si 0.89 22.83 27.73 -169.99 -4.71 18.12 16 18 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 20 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 21 C -0.11 -1.26 9.34 -39.06 -0.36 -1.62 16 22 C -0.05 -0.46 5.91 -104.35 -0.62 -1.08 16 23 C -0.12 -0.69 9.67 36.01 0.35 -0.34 16 24 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 25 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 26 H 0.07 0.26 6.06 -51.93 -0.31 -0.06 16 27 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 29 H 0.09 1.07 5.76 -51.93 -0.30 0.77 16 30 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 31 H 0.08 1.56 7.51 -51.93 -0.39 1.17 16 32 H 0.08 1.23 8.07 -51.94 -0.42 0.81 16 33 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.36 8.81 5.53 -40.82 -0.23 8.58 16 36 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 37 H 0.15 1.74 7.66 -52.48 -0.40 1.34 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.31 6.07 -51.93 -0.32 0.00 16 40 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -35.96 331.43 -7.00 -42.96 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.74 Total: 3.53 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.49 Total: 4.92 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.13 Total: -64.10 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.96 -7.00 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493640957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.288 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds