Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38606 * 120.32312 * 2 1 4 4 N 1.31495 * 120.90268 * 179.74640 * 3 2 1 5 5 C 1.32753 * 121.63783 * 0.56172 * 4 3 2 6 6 C 1.48166 * 119.71821 * 179.70806 * 5 4 3 7 7 O 1.21518 * 119.99899 * 186.17439 * 6 5 4 8 8 N 1.34774 * 120.00404 * 6.18047 * 6 5 4 9 9 C 1.46504 * 119.99825 * 5.59526 * 8 6 5 10 10 C 1.46501 * 120.00433 * 185.32724 * 8 6 5 11 11 C 1.52996 * 109.46783 * 270.27691 * 10 8 6 12 12 N 1.46503 * 109.47167 * 180.02562 * 11 10 8 13 13 C 1.36939 * 120.00085 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99717 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99829 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00016 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99964 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47213 * 90.00297 * 17 15 13 19 19 H 1.48506 * 109.46798 * 210.00234 * 17 15 13 20 20 H 1.48495 * 109.47471 * 329.99793 * 17 15 13 21 21 C 1.39261 * 120.55473 * 359.44266 * 5 4 3 22 22 C 1.38577 * 120.32915 * 180.02562 * 2 1 3 23 23 C 1.50707 * 120.74950 * 359.95786 * 22 2 1 24 24 H 1.09007 * 109.46884 * 269.97741 * 1 2 3 25 25 H 1.09000 * 109.47237 * 29.97788 * 1 2 3 26 26 H 1.08997 * 109.47042 * 149.97993 * 1 2 3 27 27 H 1.07998 * 119.55135 * 0.04130 * 3 2 1 28 28 H 1.08995 * 109.47200 * 275.13971 * 9 8 6 29 29 H 1.09001 * 109.47175 * 35.14553 * 9 8 6 30 30 H 1.08997 * 109.46954 * 155.14280 * 9 8 6 31 31 H 1.09002 * 109.46695 * 30.26520 * 10 8 6 32 32 H 1.08987 * 109.47508 * 150.27104 * 10 8 6 33 33 H 1.09007 * 109.46995 * 299.98976 * 11 10 8 34 34 H 1.08990 * 109.48062 * 59.99327 * 11 10 8 35 35 H 0.96996 * 119.99576 * 359.97438 * 12 11 10 36 36 H 0.97001 * 120.00083 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.47028 * 180.29776 * 21 5 4 38 38 H 1.09006 * 109.46882 * 270.01798 * 23 22 2 39 39 H 1.08990 * 109.47581 * 30.02159 * 23 22 2 40 40 H 1.09002 * 109.46767 * 150.02387 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 0.0050 5 6 4.2295 0.0866 -0.0009 6 6 5.7097 0.1513 -0.0014 7 8 6.3623 -0.8669 -0.1199 8 7 6.3325 1.3393 0.1296 9 6 5.5517 2.5502 0.3952 10 6 7.7906 1.4190 0.0123 11 6 8.4247 1.2170 1.3900 12 7 9.8829 1.2973 1.2729 13 6 10.6684 1.1463 2.3844 14 1 10.2129 0.9685 3.3473 15 6 12.0500 1.2219 2.2733 16 7 12.8050 1.0773 3.3416 17 14 12.8377 1.5288 0.6075 18 1 12.9892 2.9904 0.3933 19 1 14.1733 0.8810 0.5647 20 1 11.9768 0.9588 -0.4598 21 6 3.5923 -1.1517 -0.0010 22 6 2.2068 -1.1961 -0.0005 23 6 1.4779 -2.5152 -0.0002 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6648 2.1305 0.0007 28 1 5.1868 2.9610 -0.5461 29 1 4.7055 2.3036 1.0365 30 1 6.1821 3.2870 0.8930 31 1 8.1433 0.6431 -0.6672 32 1 8.0709 2.3977 -0.3768 33 1 8.0720 1.9929 2.0696 34 1 8.1445 0.2383 1.7792 35 1 10.2918 1.4574 0.4080 36 1 13.7704 1.1297 3.2640 37 1 4.1695 -2.0646 -0.0009 38 1 1.3026 -2.8331 1.0276 39 1 0.5232 -2.4030 -0.5137 40 1 2.0811 -3.2637 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493640957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = 2.580060 kcal Electronic energy + Delta-G solvation = -20910.739110 eV Core-core repulsion = 17725.525400 eV Total energy + Delta-G solvation = -3185.213711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92156 -40.33328 -37.59049 -36.38247 -35.47282 -33.67475 -33.36972 -30.58760 -29.41178 -28.09704 -27.51071 -25.64250 -23.78606 -23.71551 -22.83244 -20.70335 -19.70309 -18.46860 -17.94911 -17.09782 -16.81241 -16.50986 -16.21010 -15.86488 -15.73959 -15.26200 -15.22874 -14.82608 -14.48364 -14.09100 -13.97591 -13.79796 -13.72254 -13.52121 -13.45598 -13.13939 -12.95320 -12.81793 -12.55730 -12.46593 -12.36209 -12.14298 -11.85995 -11.42545 -11.03891 -10.51483 -10.26508 -9.98182 -9.70712 -9.40269 -8.07520 -5.43958 -0.41231 0.19561 1.36552 1.41413 1.48632 1.60683 1.82176 2.45722 2.76049 3.02547 3.22981 3.56187 3.70494 3.75072 3.87243 3.90844 4.00405 4.11909 4.22415 4.41187 4.46982 4.53226 4.64042 4.69259 4.75896 4.83300 4.90073 4.94228 4.97544 5.01644 5.10633 5.13088 5.25793 5.38293 5.47354 5.67812 5.71518 6.15080 6.23771 6.68296 6.98999 7.02242 7.72713 7.95603 9.13903 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.003221 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.017156 B = 8690.344457 C = 8949.239013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C 0.091 3.909 4 N -0.460 5.460 5 C 0.051 3.949 6 C 0.555 3.445 7 O -0.576 6.576 8 N -0.593 5.593 9 C 0.091 3.909 10 C 0.116 3.884 11 C 0.151 3.849 12 N -0.753 5.753 13 C -0.244 4.244 14 H 0.051 0.949 15 C -0.062 4.062 16 N -0.982 5.982 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.254 1.254 21 C -0.122 4.122 22 C -0.057 4.057 23 C -0.118 4.118 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.197 0.803 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.033 0.967 34 H 0.002 0.998 35 H 0.369 0.631 36 H 0.261 0.739 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.393 0.666 -11.540 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.069 4.069 4 N -0.172 5.172 5 C -0.084 4.084 6 C 0.343 3.657 7 O -0.455 6.455 8 N -0.323 5.323 9 C -0.050 4.050 10 C -0.007 4.007 11 C 0.023 3.977 12 N -0.400 5.400 13 C -0.375 4.375 14 H 0.069 0.931 15 C -0.254 4.254 16 N -0.632 5.632 17 Si 0.788 3.212 18 H -0.193 1.193 19 H -0.219 1.219 20 H -0.178 1.178 21 C -0.143 4.143 22 C -0.065 4.065 23 C -0.174 4.174 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.213 0.787 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.203 0.797 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -31.523 0.913 -11.375 33.525 hybrid contribution 1.000 -0.860 -0.292 1.351 sum -30.523 0.053 -11.667 32.677 Atomic orbital electron populations 1.20948 0.86989 1.04986 1.04089 1.21466 0.99717 0.92721 0.97119 1.23462 0.88806 0.99517 0.95140 1.68011 1.09496 1.28576 1.11099 1.20719 0.92570 0.91021 1.04114 1.18549 0.87366 0.83193 0.76564 1.90772 1.67177 1.35332 1.52235 1.47754 1.06848 1.08891 1.68806 1.22272 0.95634 0.84371 1.02704 1.21550 0.78927 1.03812 0.96459 1.20923 0.82771 0.97501 0.96473 1.42488 1.02069 1.88716 1.06731 1.18977 0.89160 1.41091 0.88289 0.93134 1.25597 0.96321 1.01933 1.01515 1.69894 1.04632 1.58386 1.30303 0.85308 0.77575 0.78612 0.79693 1.19338 1.21891 1.17832 1.22052 0.95690 0.98136 0.98440 1.20548 0.92037 0.97953 0.95958 1.20975 1.00990 0.91357 1.04067 0.89208 0.89131 0.89595 0.78668 0.90750 0.88884 0.91085 0.91209 0.87263 0.94929 0.97981 0.79695 0.93037 0.84930 0.89316 0.88188 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.65 71.24 0.69 0.23 16 2 C -0.11 -1.32 5.91 -19.69 -0.12 -1.44 16 3 C 0.09 1.29 10.86 84.83 0.92 2.21 16 4 N -0.46 -9.95 6.17 -184.91 -1.14 -11.09 16 5 C 0.05 1.41 6.57 41.89 0.28 1.69 16 6 C 0.56 19.27 7.64 86.88 0.66 19.94 16 7 O -0.58 -24.46 15.98 -3.77 -0.06 -24.52 16 8 N -0.59 -18.61 2.87 -849.85 -2.44 -21.05 16 9 C 0.09 2.12 9.12 127.77 1.17 3.28 16 10 C 0.12 4.03 5.45 86.38 0.47 4.50 16 11 C 0.15 6.63 6.58 86.38 0.57 7.20 16 12 N -0.75 -38.54 5.41 -343.46 -1.86 -40.40 16 13 C -0.24 -15.01 10.47 84.03 0.88 -14.13 16 14 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 15 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 16 N -0.98 -65.26 13.97 21.65 0.30 -64.96 16 17 Si 0.96 47.02 27.73 68.60 1.90 48.92 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 20 H -0.25 -11.36 6.52 99.48 0.65 -10.71 16 21 C -0.12 -2.93 9.34 22.61 0.21 -2.72 16 22 C -0.06 -0.92 5.91 -19.69 -0.12 -1.04 16 23 C -0.12 -1.12 9.67 71.24 0.69 -0.43 16 24 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 25 H 0.09 0.11 8.09 -2.39 -0.02 0.09 16 26 H 0.09 0.19 6.06 -2.39 -0.01 0.18 16 27 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.07 1.48 8.00 -2.39 -0.02 1.46 16 29 H 0.09 2.12 5.76 -2.39 -0.01 2.10 16 30 H 0.07 1.52 8.03 -2.39 -0.02 1.50 16 31 H 0.07 2.63 7.51 -2.39 -0.02 2.62 16 32 H 0.11 3.15 8.07 -2.39 -0.02 3.13 16 33 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.37 17.54 5.53 -92.71 -0.51 17.03 16 36 H 0.26 16.33 8.31 -92.71 -0.77 15.55 16 37 H 0.13 3.44 7.66 -2.91 -0.02 3.42 16 38 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.10 0.47 6.07 -2.39 -0.01 0.45 16 40 H 0.07 0.74 8.10 -2.39 -0.02 0.72 16 Total: -1.00 -81.86 331.43 3.95 -77.92 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.48 Total: 19.26 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.77 Total: 15.92 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -5.14 Total: -137.50 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.90 Total: 48.92 kcal Total: -81.86 3.95 -77.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493640957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.495 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds