Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38164 * 120.50401 * 2 1 4 4 N 1.31796 * 120.89628 * 179.97438 * 3 2 1 5 5 C 1.31827 * 122.05278 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.89143 * 0.02562 * 5 4 3 7 7 C 1.39803 * 120.49720 * 180.02562 * 2 1 3 8 8 C 1.48152 * 120.92134 * 0.04401 * 7 2 1 9 9 O 1.21511 * 119.99920 * 353.89958 * 8 7 2 10 10 N 1.34773 * 119.99698 * 173.89896 * 8 7 2 11 11 C 1.46507 * 119.99969 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46852 * 34.99540 * 11 10 8 13 13 C 1.53000 * 109.46900 * 275.00325 * 11 10 8 14 14 C 1.52991 * 109.47011 * 155.00451 * 11 10 8 15 15 C 1.53006 * 109.47115 * 294.99369 * 14 11 10 16 16 N 1.46503 * 109.47135 * 180.02562 * 15 14 11 17 17 C 1.36936 * 119.99589 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99592 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99549 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00175 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47166 * 89.99571 * 21 19 17 23 23 H 1.48496 * 109.47039 * 210.00055 * 21 19 17 24 24 H 1.48502 * 109.46734 * 329.99856 * 21 19 17 25 25 H 1.08996 * 109.47098 * 263.66644 * 1 2 3 26 26 H 1.09003 * 109.46472 * 23.66726 * 1 2 3 27 27 H 1.09001 * 109.46920 * 143.66642 * 1 2 3 28 28 H 1.08002 * 119.55046 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.55351 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.49790 * 179.97438 * 6 5 4 31 31 H 0.97002 * 120.00410 * 0.02562 * 10 8 7 32 32 H 1.09008 * 109.46966 * 299.99660 * 13 11 10 33 33 H 1.08993 * 109.47376 * 59.99390 * 13 11 10 34 34 H 1.08999 * 109.47492 * 180.02562 * 13 11 10 35 35 H 1.08999 * 109.48054 * 55.00053 * 14 11 10 36 36 H 1.09002 * 109.46994 * 175.00057 * 14 11 10 37 37 H 1.08994 * 109.47323 * 300.00735 * 15 14 11 38 38 H 1.09002 * 109.46628 * 60.00464 * 15 14 11 39 39 H 0.96997 * 119.99636 * 0.02562 * 16 15 14 40 40 H 0.96998 * 119.99423 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5263 1.1994 0.0005 5 6 4.2335 0.0869 0.0005 6 6 3.6137 -1.1474 -0.0005 7 6 2.2166 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0021 9 8 0.2982 -2.5386 0.1089 10 7 2.2047 -3.6524 -0.1266 11 6 1.5038 -4.9390 -0.1288 12 1 0.5404 -4.8270 -0.6262 13 6 1.2826 -5.4015 1.3128 14 6 2.3452 -5.9769 -0.8740 15 6 2.4617 -5.5771 -2.3463 16 7 3.2670 -6.5713 -3.0600 17 6 3.5090 -6.4224 -4.3996 18 1 3.1059 -5.5723 -4.9299 19 6 4.2716 -7.3647 -5.0760 20 7 4.5037 -7.2219 -6.3637 21 14 4.9669 -8.8362 -4.1591 22 1 3.9919 -9.9552 -4.2071 23 1 6.2393 -9.2604 -4.7965 24 1 5.2223 -8.4624 -2.7447 25 1 -0.3633 -0.1134 1.0214 26 1 -0.3632 0.9413 -0.4126 27 1 -0.3633 -0.8279 -0.6089 28 1 1.6693 2.1262 0.0004 29 1 5.3121 0.1414 0.0005 30 1 4.1994 -2.0549 -0.0009 31 1 3.1703 -3.6261 -0.2149 32 1 2.2460 -5.5134 1.8103 33 1 0.6833 -4.6621 1.8437 34 1 0.7615 -6.3589 1.3113 35 1 3.3399 -6.0246 -0.4307 36 1 1.8671 -6.9535 -0.7995 37 1 1.4672 -5.5294 -2.7896 38 1 2.9399 -4.6004 -2.4208 39 1 3.6286 -7.3349 -2.5837 40 1 5.0363 -7.8805 -6.8364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497183330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = 4.995510 kcal Electronic energy + Delta-G solvation = -21035.866469 eV Core-core repulsion = 17850.757500 eV Total energy + Delta-G solvation = -3185.108969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95910 -39.34526 -36.79475 -34.65813 -33.58226 -32.94956 -31.66153 -30.67581 -28.34965 -27.56042 -25.03438 -23.95172 -22.66236 -21.56465 -21.13261 -20.65047 -18.32487 -17.55341 -16.96272 -16.08485 -15.55586 -15.47911 -15.25002 -14.63355 -14.30970 -14.03636 -13.95248 -13.67561 -13.59601 -13.40580 -12.87102 -12.66462 -12.65671 -12.54311 -12.05482 -11.79289 -11.57842 -11.29888 -10.95874 -10.79763 -10.58143 -10.33354 -10.18987 -10.06637 -9.63141 -9.52011 -9.25726 -9.09103 -8.92866 -7.28183 -5.80319 -3.16616 0.49841 0.81909 2.74394 2.95145 3.33013 3.35980 3.41805 3.59925 4.15406 4.34846 4.47379 4.55139 4.57626 4.70430 4.74433 5.06249 5.10805 5.18614 5.37485 5.44227 5.44639 5.54318 5.56859 5.57278 5.59761 5.71140 5.82197 5.85153 5.88204 6.06924 6.12539 6.18209 6.35773 6.40647 6.63942 6.68488 7.34648 7.64687 7.95612 8.03147 8.38447 9.17214 9.89272 10.08764 11.38098 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.003900 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.711169 B = 7177.396149 C = 7888.361296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.467 5.467 5 C 0.086 3.914 6 C -0.134 4.134 7 C -0.093 4.093 8 C 0.559 3.441 9 O -0.527 6.527 10 N -0.711 5.711 11 C 0.146 3.854 12 H 0.093 0.907 13 C -0.161 4.161 14 C -0.140 4.140 15 C 0.157 3.843 16 N -0.757 5.757 17 C -0.247 4.247 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.140 0.860 31 H 0.401 0.599 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.361 0.639 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 12.310 18.284 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.155 4.155 7 C -0.104 4.104 8 C 0.346 3.654 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.178 4.178 15 C 0.030 3.970 16 N -0.403 5.403 17 C -0.377 4.377 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.717 3.283 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.178 0.822 29 H 0.179 0.821 30 H 0.158 0.842 31 H 0.237 0.763 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.193 0.807 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.909 13.135 18.117 22.910 hybrid contribution 0.810 -1.945 0.408 2.147 sum -4.099 11.189 18.525 22.026 Atomic orbital electron populations 1.20987 0.89005 1.03572 1.03759 1.21134 0.98468 0.92457 0.95989 1.22741 0.89777 0.97390 0.96742 1.67540 1.08329 1.31870 1.09845 1.22725 1.00643 0.87198 0.96407 1.22384 0.93914 1.00362 0.98814 1.20281 0.93797 0.93984 1.02329 1.18120 0.86972 0.83562 0.76782 1.90723 1.13382 1.87047 1.49287 1.46047 1.11069 1.05745 1.73438 1.21010 0.97022 0.81654 0.96175 0.88900 1.22166 1.01942 1.01690 0.96153 1.22131 1.00123 0.98597 0.96969 1.20617 0.94942 0.92675 0.88740 1.42708 1.62811 1.26897 1.07848 1.19059 1.27160 1.08162 0.83272 0.89303 1.24690 1.00287 0.98621 0.95535 1.69706 1.43938 1.37061 1.07426 0.86521 0.78816 0.83879 0.79114 1.21041 1.21689 1.20396 0.90456 0.91870 0.88473 0.82182 0.82079 0.84200 0.76303 0.92514 0.92228 0.91361 0.91357 0.90062 0.95485 0.95664 0.80690 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.84 36.01 0.32 -0.84 16 2 C -0.08 -0.84 5.93 -104.06 -0.62 -1.46 16 3 C 0.09 0.92 10.83 -17.59 -0.19 0.73 16 4 N -0.47 -5.21 10.33 -13.31 -0.14 -5.34 16 5 C 0.09 0.84 11.17 -17.60 -0.20 0.64 16 6 C -0.13 -1.29 9.60 -39.03 -0.37 -1.67 16 7 C -0.09 -1.06 5.91 -104.64 -0.62 -1.68 16 8 C 0.56 7.14 7.70 -12.19 -0.09 7.04 16 9 O -0.53 -7.88 13.19 5.36 0.07 -7.81 16 10 N -0.71 -8.15 4.49 -54.66 -0.25 -8.39 16 11 C 0.15 1.75 2.57 -67.93 -0.17 1.57 16 12 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 13 C -0.16 -1.65 9.48 37.16 0.35 -1.29 16 14 C -0.14 -1.89 4.87 -26.73 -0.13 -2.02 16 15 C 0.16 2.92 6.15 -4.04 -0.02 2.89 16 16 N -0.76 -17.66 5.41 -59.90 -0.32 -17.99 16 17 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 21 Si 0.89 21.80 27.74 -169.99 -4.71 17.08 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 27 H 0.10 1.18 5.95 -51.93 -0.31 0.87 16 28 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 1.02 6.58 -52.48 -0.35 0.68 16 31 H 0.40 3.95 6.78 -40.82 -0.28 3.67 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.47 7.75 -51.93 -0.40 0.07 16 39 H 0.36 8.10 5.53 -40.82 -0.23 7.87 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -33.87 332.60 -7.34 -41.21 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.77 Total: 7.97 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.00 Total: -3.20 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.07 Total: -60.26 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.87 -7.34 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497183330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.202 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds