Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38164 * 120.50401 * 2 1 4 4 N 1.31796 * 120.89628 * 179.97438 * 3 2 1 5 5 C 1.31827 * 122.05278 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.89143 * 0.02562 * 5 4 3 7 7 C 1.39803 * 120.49720 * 180.02562 * 2 1 3 8 8 C 1.48152 * 120.92134 * 0.04401 * 7 2 1 9 9 O 1.21511 * 119.99920 * 353.89958 * 8 7 2 10 10 N 1.34773 * 119.99698 * 173.89896 * 8 7 2 11 11 C 1.46507 * 119.99969 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46852 * 34.99540 * 11 10 8 13 13 C 1.53000 * 109.46900 * 275.00325 * 11 10 8 14 14 C 1.52991 * 109.47011 * 155.00451 * 11 10 8 15 15 C 1.53006 * 109.47115 * 294.99369 * 14 11 10 16 16 N 1.46503 * 109.47135 * 180.02562 * 15 14 11 17 17 C 1.36936 * 119.99589 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99592 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99549 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00175 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47166 * 89.99571 * 21 19 17 23 23 H 1.48496 * 109.47039 * 210.00055 * 21 19 17 24 24 H 1.48502 * 109.46734 * 329.99856 * 21 19 17 25 25 H 1.08996 * 109.47098 * 263.66644 * 1 2 3 26 26 H 1.09003 * 109.46472 * 23.66726 * 1 2 3 27 27 H 1.09001 * 109.46920 * 143.66642 * 1 2 3 28 28 H 1.08002 * 119.55046 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.55351 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.49790 * 179.97438 * 6 5 4 31 31 H 0.97002 * 120.00410 * 0.02562 * 10 8 7 32 32 H 1.09008 * 109.46966 * 299.99660 * 13 11 10 33 33 H 1.08993 * 109.47376 * 59.99390 * 13 11 10 34 34 H 1.08999 * 109.47492 * 180.02562 * 13 11 10 35 35 H 1.08999 * 109.48054 * 55.00053 * 14 11 10 36 36 H 1.09002 * 109.46994 * 175.00057 * 14 11 10 37 37 H 1.08994 * 109.47323 * 300.00735 * 15 14 11 38 38 H 1.09002 * 109.46628 * 60.00464 * 15 14 11 39 39 H 0.96997 * 119.99636 * 0.02562 * 16 15 14 40 40 H 0.96998 * 119.99423 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5263 1.1994 0.0005 5 6 4.2335 0.0869 0.0005 6 6 3.6137 -1.1474 -0.0005 7 6 2.2166 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0021 9 8 0.2982 -2.5386 0.1089 10 7 2.2047 -3.6524 -0.1266 11 6 1.5038 -4.9390 -0.1288 12 1 0.5404 -4.8270 -0.6262 13 6 1.2826 -5.4015 1.3128 14 6 2.3452 -5.9769 -0.8740 15 6 2.4617 -5.5771 -2.3463 16 7 3.2670 -6.5713 -3.0600 17 6 3.5090 -6.4224 -4.3996 18 1 3.1059 -5.5723 -4.9299 19 6 4.2716 -7.3647 -5.0760 20 7 4.5037 -7.2219 -6.3637 21 14 4.9669 -8.8362 -4.1591 22 1 3.9919 -9.9552 -4.2071 23 1 6.2393 -9.2604 -4.7965 24 1 5.2223 -8.4624 -2.7447 25 1 -0.3633 -0.1134 1.0214 26 1 -0.3632 0.9413 -0.4126 27 1 -0.3633 -0.8279 -0.6089 28 1 1.6693 2.1262 0.0004 29 1 5.3121 0.1414 0.0005 30 1 4.1994 -2.0549 -0.0009 31 1 3.1703 -3.6261 -0.2149 32 1 2.2460 -5.5134 1.8103 33 1 0.6833 -4.6621 1.8437 34 1 0.7615 -6.3589 1.3113 35 1 3.3399 -6.0246 -0.4307 36 1 1.8671 -6.9535 -0.7995 37 1 1.4672 -5.5294 -2.7896 38 1 2.9399 -4.6004 -2.4208 39 1 3.6286 -7.3349 -2.5837 40 1 5.0363 -7.8805 -6.8364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497183330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -18.734315 kcal Electronic energy + Delta-G solvation = -21036.895471 eV Core-core repulsion = 17850.757500 eV Total energy + Delta-G solvation = -3186.137971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81502 -40.25786 -38.01153 -36.29185 -34.41303 -34.08276 -33.33038 -31.81230 -29.74869 -28.34326 -26.00099 -25.50707 -23.58595 -23.08250 -22.22276 -21.63932 -19.78348 -19.03296 -17.86707 -17.01976 -16.69002 -16.31802 -16.27384 -16.16054 -15.85084 -15.27633 -14.99781 -14.90669 -14.63541 -14.33697 -14.32026 -13.89387 -13.62135 -13.40003 -13.33768 -12.97369 -12.88069 -12.53478 -12.42071 -12.17702 -12.00832 -11.86008 -11.75370 -11.26288 -10.99410 -10.91315 -10.37765 -10.14866 -9.91813 -9.32619 -8.04245 -5.39298 -0.34074 0.06707 1.38242 1.43538 1.50930 1.81241 2.03428 2.48454 2.80090 3.27219 3.40146 3.46613 3.54471 3.76256 3.82067 3.96466 3.99702 4.08638 4.23675 4.41198 4.52661 4.58944 4.61985 4.73303 4.74173 4.77286 4.83360 4.84492 4.97937 5.09002 5.15215 5.23586 5.30683 5.37936 5.52678 5.62396 5.72897 6.19284 6.42865 6.88624 7.06500 7.09095 7.80906 8.02308 9.17458 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.003900 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.711169 B = 7177.396149 C = 7888.361296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C 0.089 3.911 4 N -0.486 5.486 5 C 0.082 3.918 6 C -0.132 4.132 7 C -0.112 4.112 8 C 0.556 3.444 9 O -0.555 6.555 10 N -0.706 5.706 11 C 0.150 3.850 12 H 0.072 0.928 13 C -0.152 4.152 14 C -0.124 4.124 15 C 0.154 3.846 16 N -0.757 5.757 17 C -0.242 4.242 18 H 0.048 0.952 19 C -0.065 4.065 20 N -0.986 5.986 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.243 1.243 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.163 0.837 31 H 0.410 0.590 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.010 0.990 38 H 0.024 0.976 39 H 0.369 0.631 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 11.670 20.779 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.068 4.068 4 N -0.195 5.195 5 C -0.074 4.074 6 C -0.152 4.152 7 C -0.123 4.123 8 C 0.343 3.657 9 O -0.435 6.435 10 N -0.358 5.358 11 C 0.046 3.954 12 H 0.090 0.910 13 C -0.210 4.210 14 C -0.162 4.162 15 C 0.028 3.972 16 N -0.403 5.403 17 C -0.373 4.373 18 H 0.066 0.934 19 C -0.256 4.256 20 N -0.636 5.636 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.167 1.167 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.202 0.798 29 H 0.205 0.795 30 H 0.180 0.820 31 H 0.248 0.752 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.028 0.972 38 H 0.042 0.958 39 H 0.203 0.797 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.852 12.511 20.664 24.461 hybrid contribution 0.428 -1.634 -0.431 1.743 sum -3.424 10.878 20.232 23.225 Atomic orbital electron populations 1.20905 0.88733 1.03697 1.03387 1.21319 0.98878 0.92775 0.96385 1.23102 0.89696 0.98022 0.96010 1.67597 1.08823 1.32677 1.10421 1.23210 1.01914 0.86819 0.95484 1.22625 0.93236 1.01445 0.97881 1.20361 0.94778 0.93499 1.03651 1.18377 0.86746 0.84277 0.76288 1.90712 1.14613 1.87497 1.50676 1.46006 1.11516 1.05352 1.72918 1.20911 0.95807 0.81510 0.97199 0.90962 1.22081 1.02800 1.01847 0.94318 1.21992 1.01683 0.99336 0.93168 1.20762 0.93090 0.91720 0.91621 1.42663 1.63291 1.28168 1.06186 1.19009 1.26190 1.06667 0.85460 0.93354 1.25614 1.01197 1.02370 0.96449 1.69909 1.45369 1.38594 1.09702 0.85310 0.77419 0.79145 0.79285 1.20438 1.22265 1.16712 0.90459 0.89622 0.90985 0.79834 0.79491 0.81967 0.75217 0.90915 0.93245 0.90138 0.89363 0.88952 0.97164 0.95816 0.79707 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 8.84 71.24 0.63 -1.56 16 2 C -0.09 -1.93 5.93 -19.50 -0.12 -2.04 16 3 C 0.09 1.69 10.83 84.68 0.92 2.60 16 4 N -0.49 -10.12 10.33 -196.02 -2.03 -12.15 16 5 C 0.08 1.43 11.17 84.67 0.95 2.37 16 6 C -0.13 -2.32 9.60 22.63 0.22 -2.11 16 7 C -0.11 -2.50 5.91 -19.88 -0.12 -2.61 16 8 C 0.56 14.02 7.70 86.88 0.67 14.69 16 9 O -0.56 -16.93 13.19 -3.75 -0.05 -16.98 16 10 N -0.71 -15.22 4.49 -445.13 -2.00 -17.22 16 11 C 0.15 3.36 2.57 44.99 0.12 3.48 16 12 H 0.07 1.94 7.58 -2.39 -0.02 1.93 16 13 C -0.15 -2.72 9.48 71.98 0.68 -2.04 16 14 C -0.12 -3.01 4.87 30.59 0.15 -2.86 16 15 C 0.15 5.57 6.15 86.38 0.53 6.10 16 16 N -0.76 -34.25 5.41 -343.44 -1.86 -36.10 16 17 C -0.24 -13.87 10.47 84.04 0.88 -12.99 16 18 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 19 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.99 -63.26 13.97 21.65 0.30 -62.95 16 21 Si 0.96 44.11 27.74 68.60 1.90 46.02 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.24 -9.66 6.52 99.48 0.65 -9.01 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.24 8.06 -2.39 -0.02 1.22 16 27 H 0.07 1.82 5.95 -2.39 -0.01 1.81 16 28 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.16 1.97 6.58 -2.91 -0.02 1.95 16 31 H 0.41 7.18 6.78 -92.71 -0.63 6.55 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.02 0.87 7.75 -2.39 -0.02 0.85 16 39 H 0.37 15.39 5.53 -92.71 -0.51 14.88 16 40 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -74.89 332.60 2.10 -72.79 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.15 Total: 26.90 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.97 Total: -0.30 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.58 Total: -128.43 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.05 Total: -16.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.02 kcal Total: -74.89 2.10 -72.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497183330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.058 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds