Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38636 * 120.47213 * 2 1 4 4 C 1.38578 * 118.49044 * 179.97438 * 3 2 1 5 5 C 1.38604 * 119.34985 * 0.02562 * 4 3 2 6 6 N 1.31492 * 120.90317 * 359.97438 * 5 4 3 7 7 C 1.32737 * 121.64301 * 0.02562 * 6 5 4 8 8 C 1.48166 * 119.72409 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00065 * 185.94205 * 8 7 6 10 10 N 1.34776 * 120.00015 * 5.93532 * 8 7 6 11 11 C 1.46504 * 119.99929 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47031 * 35.00340 * 11 10 8 13 13 C 1.52999 * 109.47054 * 274.99906 * 11 10 8 14 14 C 1.53001 * 109.46971 * 155.00415 * 11 10 8 15 15 N 1.46508 * 109.46943 * 305.00022 * 14 11 10 16 16 C 1.46503 * 119.99850 * 269.99888 * 15 14 11 17 17 C 1.36931 * 120.00254 * 89.99951 * 15 14 11 18 18 H 1.08007 * 119.99622 * 24.28341 * 17 15 14 19 19 C 1.38808 * 119.99977 * 204.27954 * 17 15 14 20 20 N 1.31617 * 120.00189 * 13.85583 * 19 17 15 21 21 Si 1.86809 * 119.99944 * 193.85205 * 19 17 15 22 22 H 1.48503 * 109.47023 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47115 * 120.00236 * 21 19 17 24 24 H 1.48498 * 109.47203 * 240.00216 * 21 19 17 25 25 H 1.08995 * 109.47679 * 96.56860 * 1 2 3 26 26 H 1.09005 * 109.47066 * 216.57583 * 1 2 3 27 27 H 1.09003 * 109.46958 * 336.56733 * 1 2 3 28 28 H 1.08003 * 120.75085 * 359.96130 * 3 2 1 29 29 H 1.08000 * 120.32554 * 179.97438 * 4 3 2 30 30 H 1.08003 * 119.54902 * 179.97438 * 5 4 3 31 31 H 0.96996 * 119.99885 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47011 * 60.00244 * 13 11 10 33 33 H 1.09004 * 109.46961 * 180.02562 * 13 11 10 34 34 H 1.08999 * 109.47556 * 300.00112 * 13 11 10 35 35 H 1.09004 * 109.47501 * 64.99480 * 14 11 10 36 36 H 1.08995 * 109.47249 * 185.00362 * 14 11 10 37 37 H 1.09005 * 109.46785 * 93.04146 * 16 15 14 38 38 H 1.08991 * 109.47454 * 213.04272 * 16 15 14 39 39 H 1.09001 * 109.47252 * 333.04396 * 16 15 14 40 40 H 0.97002 * 119.99781 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5949 1.1470 0.0005 5 6 4.2321 -0.0840 0.0005 6 7 3.5406 -1.2024 0.0005 7 6 2.2132 -1.2004 0.0000 8 6 1.4766 -2.4860 0.0006 9 8 0.2664 -2.4929 -0.1088 10 7 2.1489 -3.6477 0.1223 11 6 1.4206 -4.9190 0.1223 12 1 0.5670 -4.8486 -0.5518 13 6 0.9286 -5.2248 1.5384 14 6 2.3505 -6.0394 -0.3476 15 7 2.9155 -5.6898 -1.6533 16 6 2.2210 -6.0846 -2.8814 17 6 4.0926 -4.9940 -1.7260 18 1 4.7959 -5.0357 -0.9073 19 6 4.3820 -4.2352 -2.8517 20 7 3.4332 -3.9593 -3.7211 21 14 6.1182 -3.6056 -3.1327 22 1 6.9926 -4.0507 -2.0180 23 1 6.6387 -4.1445 -4.4149 24 1 6.1037 -2.1218 -3.1890 25 1 -0.3634 -0.1175 -1.0208 26 1 -0.3633 -0.8253 0.6124 27 1 -0.3633 0.9429 0.4087 28 1 1.6900 2.1415 -0.0006 29 1 4.1721 2.0598 0.0001 30 1 5.3113 -0.1251 0.0005 31 1 3.1149 -3.6422 0.2099 32 1 0.2662 -4.4266 1.8731 33 1 0.3872 -6.1709 1.5384 34 1 1.7823 -5.2952 2.2124 35 1 3.1570 -6.1690 0.3742 36 1 1.7863 -6.9681 -0.4327 37 1 1.5663 -5.2752 -3.2047 38 1 2.9528 -6.2936 -3.6615 39 1 1.6270 -6.9786 -2.6915 40 1 3.6354 -3.4287 -4.5076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498255875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = 22.499882 kcal Electronic energy + Delta-G solvation = -22478.968013 eV Core-core repulsion = 19294.618091 eV Total energy + Delta-G solvation = -3184.349922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32869 -38.48205 -36.25576 -34.08187 -33.17164 -31.93585 -31.06052 -29.84600 -27.09522 -26.11858 -25.52262 -24.34711 -22.21000 -21.62800 -20.52597 -19.59337 -17.60750 -16.56707 -16.43770 -15.41853 -15.14044 -14.85701 -14.80367 -14.27807 -13.77147 -13.37933 -13.22108 -12.97300 -12.82716 -12.75987 -12.43443 -12.29066 -12.04862 -11.75686 -11.61443 -11.34190 -11.24418 -10.79138 -10.62547 -10.36819 -10.21488 -9.94290 -9.75999 -9.59660 -9.52494 -8.88846 -8.73555 -8.48609 -8.11363 -6.68048 -5.67185 -3.13040 0.99321 1.44556 3.31906 3.40312 3.47513 3.49138 3.85092 4.27738 4.54808 4.60461 4.91241 5.06848 5.10876 5.21492 5.42350 5.55307 5.58795 5.71132 5.80089 5.85952 5.97618 6.02533 6.04822 6.18957 6.22463 6.31201 6.33099 6.49507 6.54964 6.57354 6.78189 6.87630 6.95586 7.37595 7.39368 7.77634 7.84754 8.05516 8.44131 8.47586 9.00150 9.27803 9.91821 10.41975 11.37665 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.008589 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.659566 B = 3259.303751 C = 4621.764089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.156 4.156 5 C 0.088 3.912 6 N -0.438 5.438 7 C 0.090 3.910 8 C 0.570 3.430 9 O -0.553 6.553 10 N -0.663 5.663 11 C 0.116 3.884 12 H 0.077 0.923 13 C -0.159 4.159 14 C 0.141 3.859 15 N -0.596 5.596 16 C 0.163 3.837 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.014 3.986 20 N -0.897 5.897 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.291 1.291 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.414 0.586 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.041 0.959 39 H -0.003 1.003 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 6.746 9.297 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.176 4.176 5 C -0.072 4.072 6 N -0.148 5.148 7 C -0.049 4.049 8 C 0.355 3.645 9 O -0.433 6.433 10 N -0.311 5.311 11 C 0.008 3.992 12 H 0.095 0.905 13 C -0.218 4.218 14 C 0.013 3.987 15 N -0.318 5.318 16 C 0.018 3.982 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.186 4.186 20 N -0.541 5.541 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.252 0.748 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.626 5.922 9.034 11.117 hybrid contribution 1.132 1.522 -0.490 1.959 sum -1.494 7.445 8.545 11.431 Atomic orbital electron populations 1.21007 0.89296 1.02643 1.03970 1.20939 0.98287 0.92542 0.96774 1.21443 0.94116 0.97829 0.98450 1.22275 0.95248 0.99606 1.00507 1.22766 1.00436 0.87425 0.96524 1.67637 1.07193 1.31433 1.08514 1.21204 0.89772 0.94002 0.99906 1.17723 0.86381 0.83338 0.77094 1.90639 1.13447 1.86900 1.52296 1.45602 1.11849 1.04277 1.69365 1.21895 0.96772 0.85226 0.95349 0.90458 1.22159 1.00795 1.01186 0.97675 1.21205 0.94688 0.93824 0.88983 1.43895 1.24405 1.64227 0.99321 1.20765 0.95275 0.94021 0.88132 1.19061 0.93392 1.22290 1.03610 0.91621 1.24947 0.97062 0.97598 0.98962 1.70085 1.30239 1.40560 1.13236 0.86311 0.85082 0.78336 0.77599 1.20226 1.22007 1.21854 0.90565 0.88249 0.92892 0.84708 0.84790 0.82578 0.74798 0.92969 0.92205 0.93002 0.93322 0.92958 0.95485 0.93975 0.98447 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 8.74 36.00 0.31 -1.38 16 2 C -0.08 -1.37 5.93 -104.09 -0.62 -1.98 16 3 C -0.09 -1.24 9.83 -39.31 -0.39 -1.63 16 4 C -0.16 -2.01 10.11 -39.32 -0.40 -2.41 16 5 C 0.09 1.37 11.18 -17.56 -0.20 1.18 16 6 N -0.44 -8.45 9.56 -9.80 -0.09 -8.54 16 7 C 0.09 1.76 6.75 -83.01 -0.56 1.20 16 8 C 0.57 12.21 7.71 -12.18 -0.09 12.12 16 9 O -0.55 -12.32 12.97 5.35 0.07 -12.25 16 10 N -0.66 -13.90 4.47 -54.64 -0.24 -14.15 16 11 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 12 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 13 C -0.16 -2.48 9.48 37.16 0.35 -2.13 16 14 C 0.14 2.81 5.37 -4.04 -0.02 2.79 16 15 N -0.60 -14.58 2.81 -181.11 -0.51 -15.09 16 16 C 0.16 4.04 9.03 59.85 0.54 4.58 16 17 C -0.25 -6.70 7.98 -15.06 -0.12 -6.82 16 18 H 0.07 1.71 7.86 -52.48 -0.41 1.29 16 19 C 0.01 0.38 5.06 -17.43 -0.09 0.29 16 20 N -0.90 -26.22 10.85 55.49 0.60 -25.62 16 21 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.10 1.67 5.84 -51.93 -0.30 1.36 16 27 H 0.05 0.62 8.05 -51.93 -0.42 0.20 16 28 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.41 9.00 6.74 -40.82 -0.28 8.72 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 36 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 37 H 0.03 0.74 7.43 -51.93 -0.39 0.36 16 38 H 0.04 1.11 7.31 -51.93 -0.38 0.73 16 39 H 0.00 -0.07 7.86 -51.93 -0.41 -0.47 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -31.54 331.27 -7.58 -39.12 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.90 Total: 6.78 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.47 Total: 7.86 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.24 Total: -63.40 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.54 -7.58 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498255875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.621 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds