Wall clock time and date at job start Mon Mar 30 2020 01:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38636 * 120.47213 * 2 1 4 4 C 1.38578 * 118.49044 * 179.97438 * 3 2 1 5 5 C 1.38604 * 119.34985 * 0.02562 * 4 3 2 6 6 N 1.31492 * 120.90317 * 359.97438 * 5 4 3 7 7 C 1.32737 * 121.64301 * 0.02562 * 6 5 4 8 8 C 1.48166 * 119.72409 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00065 * 185.94205 * 8 7 6 10 10 N 1.34776 * 120.00015 * 5.93532 * 8 7 6 11 11 C 1.46504 * 119.99929 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47031 * 35.00340 * 11 10 8 13 13 C 1.52999 * 109.47054 * 274.99906 * 11 10 8 14 14 C 1.53001 * 109.46971 * 155.00415 * 11 10 8 15 15 N 1.46508 * 109.46943 * 305.00022 * 14 11 10 16 16 C 1.46503 * 119.99850 * 269.99888 * 15 14 11 17 17 C 1.36931 * 120.00254 * 89.99951 * 15 14 11 18 18 H 1.08007 * 119.99622 * 24.28341 * 17 15 14 19 19 C 1.38808 * 119.99977 * 204.27954 * 17 15 14 20 20 N 1.31617 * 120.00189 * 13.85583 * 19 17 15 21 21 Si 1.86809 * 119.99944 * 193.85205 * 19 17 15 22 22 H 1.48503 * 109.47023 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47115 * 120.00236 * 21 19 17 24 24 H 1.48498 * 109.47203 * 240.00216 * 21 19 17 25 25 H 1.08995 * 109.47679 * 96.56860 * 1 2 3 26 26 H 1.09005 * 109.47066 * 216.57583 * 1 2 3 27 27 H 1.09003 * 109.46958 * 336.56733 * 1 2 3 28 28 H 1.08003 * 120.75085 * 359.96130 * 3 2 1 29 29 H 1.08000 * 120.32554 * 179.97438 * 4 3 2 30 30 H 1.08003 * 119.54902 * 179.97438 * 5 4 3 31 31 H 0.96996 * 119.99885 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47011 * 60.00244 * 13 11 10 33 33 H 1.09004 * 109.46961 * 180.02562 * 13 11 10 34 34 H 1.08999 * 109.47556 * 300.00112 * 13 11 10 35 35 H 1.09004 * 109.47501 * 64.99480 * 14 11 10 36 36 H 1.08995 * 109.47249 * 185.00362 * 14 11 10 37 37 H 1.09005 * 109.46785 * 93.04146 * 16 15 14 38 38 H 1.08991 * 109.47454 * 213.04272 * 16 15 14 39 39 H 1.09001 * 109.47252 * 333.04396 * 16 15 14 40 40 H 0.97002 * 119.99781 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5949 1.1470 0.0005 5 6 4.2321 -0.0840 0.0005 6 7 3.5406 -1.2024 0.0005 7 6 2.2132 -1.2004 0.0000 8 6 1.4766 -2.4860 0.0006 9 8 0.2664 -2.4929 -0.1088 10 7 2.1489 -3.6477 0.1223 11 6 1.4206 -4.9190 0.1223 12 1 0.5670 -4.8486 -0.5518 13 6 0.9286 -5.2248 1.5384 14 6 2.3505 -6.0394 -0.3476 15 7 2.9155 -5.6898 -1.6533 16 6 2.2210 -6.0846 -2.8814 17 6 4.0926 -4.9940 -1.7260 18 1 4.7959 -5.0357 -0.9073 19 6 4.3820 -4.2352 -2.8517 20 7 3.4332 -3.9593 -3.7211 21 14 6.1182 -3.6056 -3.1327 22 1 6.9926 -4.0507 -2.0180 23 1 6.6387 -4.1445 -4.4149 24 1 6.1037 -2.1218 -3.1890 25 1 -0.3634 -0.1175 -1.0208 26 1 -0.3633 -0.8253 0.6124 27 1 -0.3633 0.9429 0.4087 28 1 1.6900 2.1415 -0.0006 29 1 4.1721 2.0598 0.0001 30 1 5.3113 -0.1251 0.0005 31 1 3.1149 -3.6422 0.2099 32 1 0.2662 -4.4266 1.8731 33 1 0.3872 -6.1709 1.5384 34 1 1.7823 -5.2952 2.2124 35 1 3.1570 -6.1690 0.3742 36 1 1.7863 -6.9681 -0.4327 37 1 1.5663 -5.2752 -3.2047 38 1 2.9528 -6.2936 -3.6615 39 1 1.6270 -6.9786 -2.6915 40 1 3.6354 -3.4287 -4.5076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498255875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:49 Heat of formation + Delta-G solvation = 1.840097 kcal Electronic energy + Delta-G solvation = -22479.863889 eV Core-core repulsion = 19294.618091 eV Total energy + Delta-G solvation = -3185.245798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64591 -39.96480 -38.00528 -35.80933 -34.47711 -33.33257 -32.81614 -31.40316 -28.32243 -28.01192 -27.36439 -25.64020 -23.70137 -23.12189 -22.07944 -21.20146 -19.11608 -18.49461 -17.74932 -16.87124 -16.69410 -16.40921 -16.29283 -15.67239 -15.58662 -15.08620 -14.70858 -14.46106 -14.40791 -14.01781 -13.86089 -13.67005 -13.45390 -13.18566 -13.07089 -12.88452 -12.79291 -12.70858 -12.50810 -12.16402 -11.96486 -11.91095 -11.66880 -10.92024 -10.73679 -10.58357 -10.25267 -10.06402 -9.65837 -8.71447 -7.76769 -5.23430 -0.24833 0.30440 1.44589 1.46453 1.55761 1.88183 2.40335 2.55321 2.94194 3.33196 3.41215 3.72637 3.85036 3.88916 4.02817 4.07961 4.16639 4.44862 4.52039 4.55737 4.61967 4.75743 4.78746 4.79157 4.85509 4.91836 4.99750 5.09697 5.16131 5.19053 5.30335 5.36031 5.41051 5.67946 5.72689 5.73625 5.82313 6.37500 6.67217 6.98524 7.20109 7.39999 7.91999 8.37624 9.27143 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.008589 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.659566 B = 3259.303751 C = 4621.764089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.086 4.086 4 C -0.134 4.134 5 C 0.070 3.930 6 N -0.475 5.475 7 C 0.048 3.952 8 C 0.558 3.442 9 O -0.576 6.576 10 N -0.668 5.668 11 C 0.117 3.883 12 H 0.044 0.956 13 C -0.145 4.145 14 C 0.140 3.860 15 N -0.610 5.610 16 C 0.178 3.822 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.039 4.039 20 N -0.932 5.932 21 Si 0.951 3.049 22 H -0.261 1.261 23 H -0.300 1.300 24 H -0.298 1.298 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.178 0.822 29 H 0.182 0.818 30 H 0.178 0.822 31 H 0.409 0.591 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.079 0.921 37 H -0.010 1.010 38 H 0.017 0.983 39 H 0.032 0.968 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 8.121 10.969 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.154 4.154 5 C -0.091 4.091 6 N -0.185 5.185 7 C -0.089 4.089 8 C 0.344 3.656 9 O -0.458 6.458 10 N -0.316 5.316 11 C 0.010 3.990 12 H 0.062 0.938 13 C -0.204 4.204 14 C 0.014 3.986 15 N -0.332 5.332 16 C 0.033 3.967 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.235 4.235 20 N -0.579 5.579 21 Si 0.781 3.219 22 H -0.185 1.185 23 H -0.228 1.228 24 H -0.225 1.225 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.196 0.804 29 H 0.200 0.800 30 H 0.195 0.805 31 H 0.246 0.754 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.009 0.991 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.638 7.265 10.754 13.080 hybrid contribution 0.831 1.127 -0.949 1.691 sum -0.807 8.391 9.804 12.930 Atomic orbital electron populations 1.20913 0.88827 1.03791 1.02732 1.21220 0.98913 0.92920 0.96710 1.21947 0.94554 0.98102 0.96508 1.22772 0.95358 1.00228 0.97011 1.23336 1.01549 0.87780 0.96395 1.67506 1.07318 1.33774 1.09952 1.21066 0.90404 0.93973 1.03486 1.18237 0.86475 0.84383 0.76536 1.90608 1.14306 1.87493 1.53359 1.45690 1.11532 1.04832 1.69531 1.21826 0.95360 0.84724 0.97102 0.93771 1.22021 1.01302 1.02037 0.94991 1.21410 0.95420 0.94769 0.87048 1.44117 1.24325 1.63945 1.00814 1.20480 0.94229 0.94053 0.87976 1.19317 0.94008 1.20842 1.03072 0.91031 1.25582 0.99940 0.98666 0.99307 1.70271 1.31859 1.42106 1.13668 0.85425 0.81813 0.77215 0.77421 1.18472 1.22783 1.22532 0.92154 0.90578 0.88959 0.80448 0.80034 0.80488 0.75412 0.94013 0.89572 0.91468 0.91779 0.90331 0.99149 0.96417 0.94950 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 8.74 71.23 0.62 -2.55 16 2 C -0.09 -3.06 5.93 -19.52 -0.12 -3.18 16 3 C -0.09 -2.00 9.83 22.45 0.22 -1.78 16 4 C -0.13 -2.93 10.11 22.44 0.23 -2.70 16 5 C 0.07 2.04 11.18 84.83 0.95 2.99 16 6 N -0.47 -18.38 9.56 -184.91 -1.77 -20.14 16 7 C 0.05 1.91 6.75 41.90 0.28 2.19 16 8 C 0.56 24.93 7.71 86.88 0.67 25.60 16 9 O -0.58 -27.06 12.97 -3.78 -0.05 -27.11 16 10 N -0.67 -28.82 4.47 -445.09 -1.99 -30.81 16 11 C 0.12 4.59 2.88 44.99 0.13 4.72 16 12 H 0.04 2.02 7.58 -2.39 -0.02 2.00 16 13 C -0.14 -4.35 9.48 71.98 0.68 -3.67 16 14 C 0.14 5.42 5.37 86.38 0.46 5.88 16 15 N -0.61 -29.88 2.81 -726.91 -2.04 -31.92 16 16 C 0.18 8.99 9.03 127.77 1.15 10.14 16 17 C -0.24 -12.81 7.98 84.03 0.67 -12.14 16 18 H 0.07 3.67 7.86 -2.91 -0.02 3.64 16 19 C -0.04 -2.21 5.06 84.86 0.43 -1.78 16 20 N -0.93 -56.47 10.85 21.65 0.23 -56.24 16 21 Si 0.95 45.58 29.58 68.60 2.03 47.61 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 2.64 5.84 -2.38 -0.01 2.63 16 27 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 28 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 31 H 0.41 18.18 6.74 -92.71 -0.63 17.56 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 2.30 8.04 -2.38 -0.02 2.28 16 36 H 0.08 2.63 7.87 -2.39 -0.02 2.61 16 37 H -0.01 -0.57 7.43 -2.38 -0.02 -0.58 16 38 H 0.02 0.94 7.31 -2.39 -0.02 0.92 16 39 H 0.03 1.37 7.86 -2.39 -0.02 1.36 16 40 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -72.61 331.27 3.21 -69.40 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.41 Total: 25.49 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.39 Total: 23.72 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -5.57 Total: -139.11 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.61 3.21 -69.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498255875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.244 kcal (2) G-P(sol) polarization free energy of solvation -72.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds