Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38637 * 120.46999 * 2 1 4 4 C 1.38583 * 118.49081 * 180.28202 * 3 2 1 5 5 C 1.38611 * 119.34738 * 359.73254 * 4 3 2 6 6 N 1.31494 * 120.90087 * 359.97438 * 5 4 3 7 7 C 1.32745 * 121.64599 * 0.02562 * 6 5 4 8 8 C 1.48161 * 119.72561 * 180.02562 * 7 6 5 9 9 O 1.21512 * 120.00360 * 174.25146 * 8 7 6 10 10 N 1.34784 * 119.99693 * 354.24815 * 8 7 6 11 11 C 1.46502 * 119.99924 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47133 * 325.00216 * 11 10 8 13 13 C 1.53006 * 109.46898 * 84.99740 * 11 10 8 14 14 C 1.52991 * 109.47248 * 204.99880 * 11 10 8 15 15 N 1.46498 * 109.47347 * 55.00039 * 14 11 10 16 16 C 1.46506 * 120.00113 * 270.00221 * 15 14 11 17 17 C 1.36934 * 120.00273 * 89.99865 * 15 14 11 18 18 H 1.08006 * 119.99565 * 340.83551 * 17 15 14 19 19 C 1.38803 * 120.00398 * 161.10914 * 17 15 14 20 20 N 1.31618 * 120.00289 * 344.46504 * 19 17 15 21 21 Si 1.86801 * 120.00373 * 164.45885 * 19 17 15 22 22 H 1.48509 * 109.47053 * 90.00116 * 21 19 17 23 23 H 1.48496 * 109.47656 * 210.00037 * 21 19 17 24 24 H 1.48501 * 109.47070 * 330.00785 * 21 19 17 25 25 H 1.08997 * 109.47009 * 263.70063 * 1 2 3 26 26 H 1.09003 * 109.47296 * 23.69918 * 1 2 3 27 27 H 1.09000 * 109.47146 * 143.69775 * 1 2 3 28 28 H 1.08002 * 120.75397 * 0.03982 * 3 2 1 29 29 H 1.07997 * 120.32786 * 179.70244 * 4 3 2 30 30 H 1.07999 * 119.54777 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99958 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46840 * 60.00297 * 13 11 10 33 33 H 1.09004 * 109.46973 * 180.02562 * 13 11 10 34 34 H 1.08995 * 109.47249 * 299.99817 * 13 11 10 35 35 H 1.09001 * 109.47260 * 294.99821 * 14 11 10 36 36 H 1.09001 * 109.47406 * 175.00360 * 14 11 10 37 37 H 1.08995 * 109.47042 * 264.65957 * 16 15 14 38 38 H 1.09002 * 109.46947 * 24.66104 * 16 15 14 39 39 H 1.09002 * 109.46901 * 144.66167 * 16 15 14 40 40 H 0.97003 * 120.00439 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1471 -0.0060 5 6 4.2322 -0.0839 -0.0061 6 7 3.5407 -1.2023 -0.0002 7 6 2.2132 -1.2003 0.0057 8 6 1.4767 -2.4859 0.0129 9 8 0.2666 -2.4923 0.1237 10 7 2.1489 -3.6483 -0.1035 11 6 1.4206 -4.9195 -0.0970 12 1 0.5672 -4.8458 0.5771 13 6 0.9278 -5.2321 -1.5114 14 6 2.3506 -6.0376 0.3779 15 7 2.9162 -5.6818 1.6816 16 6 4.1757 -4.9371 1.7552 17 6 2.2676 -6.0451 2.8316 18 1 1.2202 -6.3072 2.8010 19 6 2.9546 -6.0712 4.0374 20 7 4.2706 -6.0505 4.0456 21 14 2.0116 -6.1353 5.6486 22 1 1.7838 -7.5517 6.0328 23 1 2.7970 -5.4550 6.7094 24 1 0.7041 -5.4507 5.4845 25 1 -0.3633 -0.1128 1.0214 26 1 -0.3634 0.9410 -0.4131 27 1 -0.3633 -0.8282 -0.6084 28 1 1.6901 2.1416 0.0006 29 1 4.1722 2.0598 -0.0110 30 1 5.3114 -0.1250 -0.0104 31 1 3.1149 -3.6432 -0.1924 32 1 1.7813 -5.3058 -2.1854 33 1 0.3856 -6.1777 -1.5064 34 1 0.2653 -4.4356 -1.8497 35 1 3.1567 -6.1708 -0.3437 36 1 1.7864 -6.9659 0.4678 37 1 5.0032 -5.6346 1.8838 38 1 4.3173 -4.3710 0.8345 39 1 4.1435 -4.2514 2.6019 40 1 4.7507 -6.0691 4.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498255877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = 25.965037 kcal Electronic energy + Delta-G solvation = -22019.745964 eV Core-core repulsion = 18835.546302 eV Total energy + Delta-G solvation = -3184.199662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60885 -38.76066 -36.42033 -34.24718 -33.39107 -32.18193 -31.06504 -30.09118 -27.33168 -26.11717 -25.58171 -24.59064 -22.41804 -21.75432 -20.57335 -19.97814 -17.77024 -16.85425 -16.53771 -15.57482 -15.30670 -15.17351 -14.87011 -14.55044 -13.78714 -13.52556 -13.38751 -13.23800 -13.11216 -12.77211 -12.64911 -12.39891 -12.01469 -11.99754 -11.81891 -11.38178 -11.25782 -10.77129 -10.61373 -10.55879 -10.10813 -9.98038 -9.85256 -9.79985 -9.78382 -9.16599 -9.00086 -8.55989 -8.35973 -6.72481 -5.67354 -3.09602 0.72631 1.18688 3.04061 3.41885 3.48591 3.52255 3.55808 3.97928 4.31204 4.55394 4.69817 4.82246 4.88415 4.96219 5.32996 5.36669 5.52063 5.54798 5.64216 5.69775 5.82950 5.84195 5.96376 5.99300 6.11413 6.13026 6.23962 6.33403 6.47052 6.54923 6.65645 6.76683 6.83795 7.12713 7.45706 7.74175 7.75808 7.86972 8.11921 8.42476 8.67463 9.28330 9.92239 10.38833 11.37672 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.005606 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.827023 B = 4993.423412 C = 5461.571720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.152 4.152 5 C 0.090 3.910 6 N -0.449 5.449 7 C 0.081 3.919 8 C 0.566 3.434 9 O -0.540 6.540 10 N -0.680 5.680 11 C 0.113 3.887 12 H 0.086 0.914 13 C -0.158 4.158 14 C 0.143 3.857 15 N -0.599 5.599 16 C 0.169 3.831 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.908 5.908 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.407 0.593 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.028 0.972 38 H -0.003 1.003 39 H 0.042 0.958 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 12.909 -11.551 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.116 4.116 4 C -0.172 4.172 5 C -0.070 4.070 6 N -0.160 5.160 7 C -0.057 4.057 8 C 0.351 3.649 9 O -0.419 6.419 10 N -0.331 5.331 11 C 0.006 3.994 12 H 0.104 0.896 13 C -0.217 4.217 14 C 0.015 3.985 15 N -0.321 5.321 16 C 0.025 3.975 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.197 4.197 20 N -0.554 5.554 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.245 0.755 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.061 0.939 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.064 12.017 -11.305 16.627 hybrid contribution -0.191 0.972 1.072 1.460 sum -2.255 12.989 -10.232 16.688 Atomic orbital electron populations 1.21041 0.89108 1.02967 1.04091 1.20957 0.98411 0.92438 0.96251 1.21511 0.94175 0.97961 0.97968 1.22325 0.95246 0.99745 0.99932 1.22787 1.00494 0.87325 0.96431 1.67594 1.07200 1.31827 1.09382 1.21211 0.89803 0.94043 1.00664 1.17809 0.86587 0.83251 0.77278 1.90679 1.13279 1.86760 1.51170 1.45931 1.11568 1.05013 1.70542 1.22013 0.97283 0.84262 0.95848 0.89635 1.22127 1.00837 1.01492 0.97228 1.21040 0.95003 0.94280 0.88220 1.43861 1.24743 1.63213 1.00276 1.20803 0.87521 0.93909 0.95302 1.19169 0.92762 1.40657 0.85370 0.91400 1.24888 0.95314 1.01403 0.98134 1.70094 1.05208 1.55171 1.24910 0.86320 0.79196 0.77599 0.83845 1.21469 1.21688 1.20626 0.90371 0.92609 0.88182 0.84458 0.84513 0.82198 0.75490 0.93001 0.91825 0.92917 0.94049 0.91841 0.95422 0.98456 0.93901 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.74 36.00 0.31 -1.18 16 2 C -0.08 -1.08 5.93 -104.09 -0.62 -1.70 16 3 C -0.09 -0.98 9.83 -39.31 -0.39 -1.36 16 4 C -0.15 -1.51 10.12 -39.32 -0.40 -1.91 16 5 C 0.09 1.07 11.18 -17.56 -0.20 0.88 16 6 N -0.45 -7.04 9.56 -9.80 -0.09 -7.13 16 7 C 0.08 1.34 6.75 -83.01 -0.56 0.78 16 8 C 0.57 10.64 7.71 -12.18 -0.09 10.55 16 9 O -0.54 -10.89 12.98 5.36 0.07 -10.83 16 10 N -0.68 -12.61 4.51 -54.65 -0.25 -12.86 16 11 C 0.11 2.09 2.88 -67.93 -0.20 1.89 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 13 C -0.16 -2.35 9.48 37.16 0.35 -1.99 16 14 C 0.14 2.88 5.29 -4.05 -0.02 2.86 16 15 N -0.60 -14.99 2.79 -181.12 -0.50 -15.49 16 16 C 0.17 4.19 8.51 59.85 0.51 4.70 16 17 C -0.25 -6.99 9.68 -15.06 -0.15 -7.13 16 18 H 0.07 1.87 7.88 -52.48 -0.41 1.46 16 19 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 16 20 N -0.91 -26.92 10.61 55.49 0.59 -26.33 16 21 Si 0.90 22.60 29.58 -169.99 -5.03 17.57 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.10 1.49 5.85 -51.93 -0.30 1.18 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.41 7.45 5.55 -40.82 -0.23 7.23 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.76 8.07 -51.93 -0.42 0.35 16 36 H 0.06 1.25 8.04 -51.93 -0.42 0.84 16 37 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 38 H 0.00 -0.06 5.77 -51.93 -0.30 -0.36 16 39 H 0.04 1.17 7.14 -51.93 -0.37 0.80 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -32.43 328.91 -7.53 -39.95 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.74 Total: 3.87 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.53 Total: 6.29 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.26 Total: -61.82 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.43 -7.53 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498255877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.917 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds