Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38637 * 120.46999 * 2 1 4 4 C 1.38583 * 118.49081 * 180.28202 * 3 2 1 5 5 C 1.38611 * 119.34738 * 359.73254 * 4 3 2 6 6 N 1.31494 * 120.90087 * 359.97438 * 5 4 3 7 7 C 1.32745 * 121.64599 * 0.02562 * 6 5 4 8 8 C 1.48161 * 119.72561 * 180.02562 * 7 6 5 9 9 O 1.21512 * 120.00360 * 174.25146 * 8 7 6 10 10 N 1.34784 * 119.99693 * 354.24815 * 8 7 6 11 11 C 1.46502 * 119.99924 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47133 * 325.00216 * 11 10 8 13 13 C 1.53006 * 109.46898 * 84.99740 * 11 10 8 14 14 C 1.52991 * 109.47248 * 204.99880 * 11 10 8 15 15 N 1.46498 * 109.47347 * 55.00039 * 14 11 10 16 16 C 1.46506 * 120.00113 * 270.00221 * 15 14 11 17 17 C 1.36934 * 120.00273 * 89.99865 * 15 14 11 18 18 H 1.08006 * 119.99565 * 340.83551 * 17 15 14 19 19 C 1.38803 * 120.00398 * 161.10914 * 17 15 14 20 20 N 1.31618 * 120.00289 * 344.46504 * 19 17 15 21 21 Si 1.86801 * 120.00373 * 164.45885 * 19 17 15 22 22 H 1.48509 * 109.47053 * 90.00116 * 21 19 17 23 23 H 1.48496 * 109.47656 * 210.00037 * 21 19 17 24 24 H 1.48501 * 109.47070 * 330.00785 * 21 19 17 25 25 H 1.08997 * 109.47009 * 263.70063 * 1 2 3 26 26 H 1.09003 * 109.47296 * 23.69918 * 1 2 3 27 27 H 1.09000 * 109.47146 * 143.69775 * 1 2 3 28 28 H 1.08002 * 120.75397 * 0.03982 * 3 2 1 29 29 H 1.07997 * 120.32786 * 179.70244 * 4 3 2 30 30 H 1.07999 * 119.54777 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99958 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46840 * 60.00297 * 13 11 10 33 33 H 1.09004 * 109.46973 * 180.02562 * 13 11 10 34 34 H 1.08995 * 109.47249 * 299.99817 * 13 11 10 35 35 H 1.09001 * 109.47260 * 294.99821 * 14 11 10 36 36 H 1.09001 * 109.47406 * 175.00360 * 14 11 10 37 37 H 1.08995 * 109.47042 * 264.65957 * 16 15 14 38 38 H 1.09002 * 109.46947 * 24.66104 * 16 15 14 39 39 H 1.09002 * 109.46901 * 144.66167 * 16 15 14 40 40 H 0.97003 * 120.00439 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1471 -0.0060 5 6 4.2322 -0.0839 -0.0061 6 7 3.5407 -1.2023 -0.0002 7 6 2.2132 -1.2003 0.0057 8 6 1.4767 -2.4859 0.0129 9 8 0.2666 -2.4923 0.1237 10 7 2.1489 -3.6483 -0.1035 11 6 1.4206 -4.9195 -0.0970 12 1 0.5672 -4.8458 0.5771 13 6 0.9278 -5.2321 -1.5114 14 6 2.3506 -6.0376 0.3779 15 7 2.9162 -5.6818 1.6816 16 6 4.1757 -4.9371 1.7552 17 6 2.2676 -6.0451 2.8316 18 1 1.2202 -6.3072 2.8010 19 6 2.9546 -6.0712 4.0374 20 7 4.2706 -6.0505 4.0456 21 14 2.0116 -6.1353 5.6486 22 1 1.7838 -7.5517 6.0328 23 1 2.7970 -5.4550 6.7094 24 1 0.7041 -5.4507 5.4845 25 1 -0.3633 -0.1128 1.0214 26 1 -0.3634 0.9410 -0.4131 27 1 -0.3633 -0.8282 -0.6084 28 1 1.6901 2.1416 0.0006 29 1 4.1722 2.0598 -0.0110 30 1 5.3114 -0.1250 -0.0104 31 1 3.1149 -3.6432 -0.1924 32 1 1.7813 -5.3058 -2.1854 33 1 0.3856 -6.1777 -1.5064 34 1 0.2653 -4.4356 -1.8497 35 1 3.1567 -6.1708 -0.3437 36 1 1.7864 -6.9659 0.4678 37 1 5.0032 -5.6346 1.8838 38 1 4.3173 -4.3710 0.8345 39 1 4.1435 -4.2514 2.6019 40 1 4.7507 -6.0691 4.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498255877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = 4.718435 kcal Electronic energy + Delta-G solvation = -22020.667286 eV Core-core repulsion = 18835.546302 eV Total energy + Delta-G solvation = -3185.120984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72361 -40.06400 -38.11226 -35.93338 -34.51134 -33.35553 -32.82449 -31.58499 -28.37392 -28.01086 -27.44107 -25.68960 -23.74046 -23.13878 -22.08311 -21.44847 -19.03915 -18.77043 -17.72377 -16.97937 -16.74072 -16.48954 -16.34266 -15.75788 -15.53474 -15.22038 -14.80200 -14.55314 -14.42119 -14.01572 -13.76894 -13.66531 -13.52345 -13.33159 -13.11451 -12.87908 -12.76822 -12.74923 -12.51503 -12.30752 -12.01999 -11.88127 -11.79921 -10.99137 -10.75468 -10.65765 -10.33346 -10.13886 -9.78824 -8.79346 -7.83997 -5.27648 -0.29463 0.27853 1.40849 1.42933 1.52127 1.80737 2.24875 2.48690 2.88894 3.24440 3.28195 3.67132 3.79191 3.87719 3.99570 4.07153 4.12596 4.36759 4.47575 4.53932 4.59306 4.74295 4.77178 4.78839 4.80242 4.91998 4.97683 5.09605 5.14382 5.18231 5.29305 5.36182 5.41625 5.59291 5.68025 5.71540 5.74429 6.29966 6.53600 6.89209 7.14159 7.26863 7.86928 8.27961 9.18887 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.005606 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.827023 B = 4993.423412 C = 5461.571720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.131 4.131 5 C 0.078 3.922 6 N -0.480 5.480 7 C 0.042 3.958 8 C 0.557 3.443 9 O -0.566 6.566 10 N -0.684 5.684 11 C 0.121 3.879 12 H 0.051 0.949 13 C -0.145 4.145 14 C 0.142 3.858 15 N -0.613 5.613 16 C 0.190 3.810 17 C -0.257 4.257 18 H 0.066 0.934 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.960 3.040 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.281 1.281 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.176 0.824 29 H 0.183 0.817 30 H 0.187 0.813 31 H 0.407 0.593 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.004 0.996 38 H 0.030 0.970 39 H 0.007 0.993 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 14.983 -12.600 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.150 4.150 5 C -0.083 4.083 6 N -0.192 5.192 7 C -0.094 4.094 8 C 0.343 3.657 9 O -0.447 6.447 10 N -0.334 5.334 11 C 0.014 3.986 12 H 0.069 0.931 13 C -0.204 4.204 14 C 0.016 3.984 15 N -0.336 5.336 16 C 0.045 3.955 17 C -0.387 4.387 18 H 0.084 0.916 19 C -0.248 4.248 20 N -0.583 5.583 21 Si 0.788 3.212 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.206 1.206 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.193 0.807 29 H 0.200 0.800 30 H 0.204 0.796 31 H 0.245 0.755 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.022 0.978 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.839 14.076 -12.389 18.842 hybrid contribution -0.231 0.430 1.328 1.415 sum -2.070 14.507 -11.061 18.359 Atomic orbital electron populations 1.20946 0.89043 1.03782 1.02904 1.21171 0.98748 0.92907 0.96433 1.21971 0.94760 0.98068 0.96326 1.22823 0.95175 1.00548 0.96483 1.23412 1.01778 0.87386 0.95706 1.67489 1.06990 1.34061 1.10624 1.20965 0.90549 0.93565 1.04341 1.18333 0.86613 0.84240 0.76499 1.90654 1.14344 1.87371 1.52284 1.45937 1.11465 1.05133 1.70892 1.21770 0.95538 0.83912 0.97359 0.93073 1.22005 1.01489 1.02081 0.94790 1.21233 0.95793 0.94935 0.86487 1.44049 1.24717 1.63416 1.01399 1.20463 0.86848 0.92776 0.95396 1.19445 0.92883 1.39658 0.86729 0.91648 1.25586 0.96147 1.02067 1.00959 1.70236 1.06316 1.56604 1.25136 0.85388 0.77784 0.77737 0.80260 1.20582 1.21919 1.20638 0.91812 0.89123 0.90678 0.80686 0.79981 0.79574 0.75513 0.91166 0.90046 0.93498 0.91755 0.91454 0.97798 0.95170 0.97414 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 8.74 71.24 0.62 -2.19 16 2 C -0.09 -2.40 5.93 -19.52 -0.12 -2.51 16 3 C -0.09 -1.55 9.83 22.45 0.22 -1.33 16 4 C -0.13 -2.05 10.12 22.44 0.23 -1.82 16 5 C 0.08 1.67 11.18 84.83 0.95 2.62 16 6 N -0.48 -14.78 9.56 -184.91 -1.77 -16.55 16 7 C 0.04 1.41 6.75 41.89 0.28 1.69 16 8 C 0.56 21.64 7.71 86.88 0.67 22.31 16 9 O -0.57 -23.91 12.98 -3.75 -0.05 -23.96 16 10 N -0.68 -25.82 4.51 -445.10 -2.01 -27.83 16 11 C 0.12 4.52 2.88 44.99 0.13 4.65 16 12 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 13 C -0.14 -4.16 9.48 71.98 0.68 -3.48 16 14 C 0.14 5.68 5.29 86.38 0.46 6.14 16 15 N -0.61 -31.15 2.79 -726.95 -2.02 -33.17 16 16 C 0.19 9.60 8.51 127.77 1.09 10.69 16 17 C -0.26 -14.61 9.68 84.03 0.81 -13.80 16 18 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 19 C -0.05 -3.07 5.06 84.86 0.43 -2.64 16 20 N -0.94 -56.73 10.61 21.65 0.23 -56.50 16 21 Si 0.96 47.29 29.58 68.60 2.03 49.32 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 27 H 0.07 2.31 5.85 -2.39 -0.01 2.29 16 28 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.41 15.02 5.55 -92.71 -0.51 14.51 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 36 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 37 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 38 H 0.03 1.29 5.77 -2.39 -0.01 1.28 16 39 H 0.01 0.40 7.14 -2.39 -0.02 0.39 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -73.58 328.91 3.39 -70.19 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.53 Total: 18.18 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 6.46 Total: 20.32 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -5.57 Total: -134.05 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -73.58 3.39 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498255877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.909 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds