Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34487 * 126.83371 * 2 1 4 4 N 1.36439 * 108.85873 * 180.25227 * 3 2 1 5 5 H 0.96999 * 124.85578 * 179.72509 * 4 3 2 6 6 C 1.34665 * 110.29800 * 359.75221 * 4 3 2 7 7 C 1.36772 * 108.39175 * 359.97438 * 6 4 3 8 8 C 1.47262 * 126.93486 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99373 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00723 * 0.02790 * 8 7 6 11 11 C 1.46500 * 120.00509 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46593 * 324.99907 * 11 10 8 13 13 C 1.52998 * 109.47003 * 204.99732 * 11 10 8 14 14 N 1.46500 * 109.47071 * 55.00255 * 13 11 10 15 15 C 1.36942 * 120.00244 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00458 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00317 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47292 * 59.99910 * 19 17 15 21 21 H 1.48502 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47016 * 300.00314 * 19 17 15 23 23 C 1.52996 * 109.47073 * 84.99721 * 11 10 8 24 24 C 1.53002 * 117.49888 * 231.25527 * 23 11 10 25 25 C 1.53000 * 117.50107 * 299.91289 * 23 11 10 26 26 H 1.09000 * 109.47232 * 270.15056 * 1 2 3 27 27 H 1.09001 * 109.47291 * 30.14825 * 1 2 3 28 28 H 1.08997 * 109.47187 * 150.14934 * 1 2 3 29 29 H 1.08009 * 125.57006 * 0.03396 * 3 2 1 30 30 H 1.07994 * 125.79908 * 180.02562 * 6 4 3 31 31 H 0.97006 * 119.99568 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.47096 * 174.99683 * 13 11 10 33 33 H 1.08996 * 109.47337 * 294.99987 * 13 11 10 34 34 H 0.96999 * 120.00125 * 359.97438 * 14 13 11 35 35 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54951 * 85.58501 * 23 11 10 37 37 H 1.09000 * 117.49996 * 215.00804 * 24 23 11 38 38 H 1.08999 * 117.49664 * 0.02562 * 24 23 11 39 39 H 1.09008 * 117.49673 * 359.97438 * 25 23 11 40 40 H 1.08999 * 117.49959 * 144.99502 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6554 -0.0057 5 1 4.3839 1.2414 -0.0107 6 6 3.6656 -0.6902 -0.0040 7 6 2.3863 -1.1740 0.0035 8 6 1.9750 -2.5880 0.0073 9 8 0.7937 -2.8776 0.0136 10 7 2.9073 -3.5612 0.0038 11 6 2.4981 -4.9678 0.0070 12 1 1.5911 -5.0809 0.6008 13 6 3.6138 -5.8222 0.6121 14 7 3.9545 -5.3100 1.9417 15 6 4.9339 -5.9192 2.6799 16 1 5.4548 -6.7776 2.2820 17 6 5.2571 -5.4336 3.9394 18 7 4.6220 -4.3878 4.4245 19 14 6.5926 -6.2651 4.9467 20 1 7.8769 -6.2158 4.2028 21 1 6.7447 -5.5604 6.2450 22 1 6.2176 -7.6808 5.1933 23 6 2.2281 -5.4236 -1.4283 24 6 0.8928 -6.1150 -1.7106 25 6 1.1371 -4.6887 -2.2096 26 1 -0.3634 0.0027 1.0277 27 1 -0.3634 0.8886 -0.5161 28 1 -0.3633 -0.8913 -0.5115 29 1 1.9867 2.1060 0.0005 30 1 4.5664 -1.2859 -0.0071 31 1 3.8495 -3.3301 -0.0015 32 1 3.2755 -6.8549 0.6964 33 1 4.4933 -5.7792 -0.0302 34 1 3.4870 -4.5388 2.2989 35 1 4.8476 -4.0487 5.3048 36 1 3.1004 -5.7675 -1.9843 37 1 0.8864 -6.9138 -2.4522 38 1 0.2064 -6.2447 -0.8738 39 1 0.6113 -3.8807 -1.7008 40 1 1.2915 -4.5490 -3.2795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498864603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = 18.920769 kcal Electronic energy + Delta-G solvation = -21631.695423 eV Core-core repulsion = 18447.190299 eV Total energy + Delta-G solvation = -3184.505124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03604 -40.52678 -38.17011 -36.58420 -34.90870 -33.27565 -33.03751 -30.98009 -29.20506 -27.38762 -25.93715 -24.13724 -23.14786 -23.01492 -21.43656 -20.82924 -20.13425 -19.25288 -18.98516 -17.40161 -16.95136 -16.56290 -16.46070 -15.83394 -15.42827 -15.07240 -14.92350 -14.71447 -14.38436 -14.30436 -14.03547 -13.59037 -13.53020 -13.22150 -13.15124 -12.74473 -12.67153 -12.46268 -12.31014 -12.19002 -12.08796 -11.82758 -11.21774 -11.05415 -10.95456 -10.63319 -9.87854 -9.45463 -9.12069 -8.99741 -7.91878 -5.22134 0.87069 1.48877 1.52045 1.55759 1.57977 2.28380 2.51186 2.57769 2.68123 3.10713 3.41771 3.62853 3.99426 4.05271 4.12512 4.17658 4.21297 4.32459 4.38643 4.50548 4.55960 4.67093 4.76876 4.84417 4.93546 4.95901 4.97108 5.07858 5.15461 5.20070 5.32770 5.37908 5.45909 5.51571 5.71290 5.89980 6.02036 6.27694 6.72822 6.82256 7.35087 7.50673 8.08578 8.33358 9.30793 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.005678 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.816408 B = 4929.989654 C = 6471.873103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.060 3.940 7 C -0.265 4.265 8 C 0.585 3.415 9 O -0.583 6.583 10 N -0.704 5.704 11 C 0.181 3.819 12 H 0.053 0.947 13 C 0.151 3.849 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.079 0.921 17 C -0.073 4.073 18 N -0.969 5.969 19 Si 0.974 3.026 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.281 1.281 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.182 4.182 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.205 0.795 30 H 0.189 0.811 31 H 0.404 0.596 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 9.881 -14.627 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.157 4.157 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.276 0.724 6 C -0.078 4.078 7 C -0.276 4.276 8 C 0.376 3.624 9 O -0.465 6.465 10 N -0.353 5.353 11 C 0.076 3.924 12 H 0.071 0.929 13 C 0.024 3.976 14 N -0.385 5.385 15 C -0.376 4.376 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.207 1.207 23 C -0.183 4.183 24 C -0.202 4.202 25 C -0.219 4.219 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.222 0.778 30 H 0.206 0.794 31 H 0.239 0.761 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.336 9.647 -14.587 17.644 hybrid contribution 1.114 -0.019 1.165 1.612 sum -1.223 9.628 -13.422 16.563 Atomic orbital electron populations 1.20077 0.89650 1.02254 1.01242 1.20811 0.96106 0.91143 1.07659 1.22012 0.82209 0.99872 1.09740 1.41492 1.08888 1.06104 1.56366 0.72367 1.22183 0.98283 0.84931 1.02427 1.20499 0.94540 0.92250 1.20292 1.17761 0.85085 0.85079 0.74486 1.90605 1.18633 1.84328 1.52983 1.45711 1.09718 1.05272 1.74619 1.20491 0.97170 0.80508 0.94266 0.92863 1.21029 0.94881 0.95563 0.86095 1.42522 1.44018 1.36306 1.15675 1.19606 1.11022 1.09478 0.97502 0.90281 1.25556 1.02675 0.99269 0.99040 1.69847 1.46000 1.27515 1.18544 0.85209 0.79349 0.77557 0.77579 1.19958 1.22518 1.20720 1.22572 0.94208 1.05852 0.95677 1.22972 0.97820 0.96023 1.03379 1.23183 1.02531 0.96248 0.99959 0.92963 0.89821 0.93114 0.77833 0.79421 0.76069 0.94700 0.94036 0.79428 0.94180 0.86041 0.86535 0.90216 0.88971 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 9.97 71.23 0.71 -1.33 16 2 C -0.15 -4.28 6.35 -18.52 -0.12 -4.39 16 3 C -0.01 -0.20 11.82 83.12 0.98 0.78 16 4 N -0.53 -9.40 5.90 -194.55 -1.15 -10.55 16 5 H 0.44 4.12 8.96 -92.71 -0.83 3.29 16 6 C 0.06 1.45 11.40 83.91 0.96 2.41 16 7 C -0.27 -8.50 6.29 -19.04 -0.12 -8.62 16 8 C 0.59 21.98 7.14 86.62 0.62 22.60 16 9 O -0.58 -25.06 12.35 -4.14 -0.05 -25.12 16 10 N -0.70 -24.56 4.49 -445.96 -2.00 -26.56 16 11 C 0.18 6.52 2.43 44.99 0.11 6.63 16 12 H 0.05 2.28 7.33 -2.39 -0.02 2.26 16 13 C 0.15 5.98 5.80 86.38 0.50 6.49 16 14 N -0.74 -37.49 5.43 -343.46 -1.87 -39.35 16 15 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 19 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 C -0.16 -4.78 5.36 -10.79 -0.06 -4.84 16 24 C -0.16 -4.45 10.18 30.62 0.31 -4.14 16 25 C -0.18 -5.30 9.73 30.62 0.30 -5.00 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.63 6.86 -2.39 -0.02 1.62 16 29 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.19 3.78 7.45 -2.91 -0.02 3.76 16 31 H 0.40 13.00 7.55 -92.70 -0.70 12.30 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.37 20.71 7.33 -92.71 -0.68 20.03 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.12 3.08 8.11 -2.39 -0.02 3.06 16 37 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 39 H 0.09 3.29 5.02 -2.38 -0.01 3.28 16 40 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.97 333.79 1.61 -72.36 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -1.13 Total: 46.42 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.50 Total: -5.69 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -4.73 Total: -135.65 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.97 1.61 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498864603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.276 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds