Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34485 * 126.83907 * 2 1 4 4 N 1.36438 * 108.85540 * 180.25807 * 3 2 1 5 5 H 0.97005 * 124.84729 * 179.73204 * 4 3 2 6 6 C 1.34658 * 110.30407 * 359.75067 * 4 3 2 7 7 C 1.36769 * 108.39002 * 0.02562 * 6 4 3 8 8 C 1.47267 * 126.93649 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00000 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00403 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00358 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46951 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.47313 * 210.00112 * 19 17 15 22 22 H 1.48501 * 109.46991 * 330.00153 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 H 1.08997 * 109.47076 * 270.14620 * 1 2 3 27 27 H 1.09003 * 109.47284 * 30.14253 * 1 2 3 28 28 H 1.08998 * 109.47824 * 150.14188 * 1 2 3 29 29 H 1.08000 * 125.56521 * 0.04115 * 3 2 1 30 30 H 1.08001 * 125.80329 * 180.02562 * 6 4 3 31 31 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 33 33 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 35 35 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 36 36 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 37 37 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 38 38 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 39 39 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 40 40 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6110 0.6551 -0.0058 5 1 4.3840 1.2412 -0.0107 6 6 3.6656 -0.6904 -0.0042 7 6 2.3863 -1.1741 0.0023 8 6 1.9748 -2.5881 0.0056 9 8 0.7935 -2.8777 0.0110 10 7 2.9071 -3.5613 0.0028 11 6 2.4978 -4.9680 0.0055 12 1 1.5856 -5.0820 -0.5802 13 6 3.6080 -5.8235 -0.6078 14 7 3.9373 -5.3136 -1.9412 15 6 4.9102 -5.9242 -2.6868 16 1 5.4344 -6.7820 -2.2920 17 6 5.2225 -5.4408 -3.9498 18 7 4.5840 -4.3951 -4.4308 19 14 6.5491 -6.2742 -4.9672 20 1 5.9376 -7.3417 -5.7990 21 1 7.2001 -5.2718 -5.8485 22 1 7.5642 -6.8718 -4.0630 23 6 2.2402 -5.4213 1.4439 24 6 0.9073 -6.1121 1.7390 25 6 1.1560 -4.6849 2.2333 26 1 -0.3633 0.0026 1.0276 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3635 -0.8912 -0.5116 29 1 1.9868 2.1058 0.0006 30 1 4.5664 -1.2862 -0.0074 31 1 3.8493 -3.3304 -0.0018 32 1 3.2689 -6.8564 -0.6873 33 1 4.4931 -5.7795 0.0268 34 1 3.4667 -4.5430 -2.2955 35 1 4.8025 -4.0570 -5.3133 36 1 3.1172 -5.7643 1.9929 37 1 0.2137 -6.2432 0.9084 38 1 0.9073 -6.9093 2.4823 39 1 1.3195 -4.5438 3.3017 40 1 0.6265 -3.8772 1.7281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498864605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = 41.488592 kcal Electronic energy + Delta-G solvation = -21630.741359 eV Core-core repulsion = 18447.214849 eV Total energy + Delta-G solvation = -3183.526510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03185 -39.19962 -36.82806 -34.90690 -33.28036 -32.27062 -31.19779 -29.68609 -27.64805 -26.40466 -24.05148 -22.83562 -21.97182 -21.41739 -20.21513 -19.60447 -18.96842 -18.19229 -17.11402 -16.06171 -15.61715 -15.05032 -14.89226 -14.39505 -14.17557 -13.81908 -13.36848 -13.20809 -13.04950 -12.98483 -12.74714 -12.52806 -12.18612 -11.97517 -11.56441 -11.26271 -11.10907 -10.92644 -10.85316 -10.78444 -10.15713 -9.99577 -9.85945 -9.63342 -9.30265 -8.88910 -8.55742 -8.32067 -8.15723 -6.93097 -5.75668 -3.05472 2.00073 2.53142 3.29020 3.42938 3.48176 3.49628 3.65430 3.95271 4.31444 4.57911 4.98466 5.00320 5.14414 5.25295 5.29363 5.38761 5.50443 5.55518 5.58417 5.77411 5.90896 5.94736 5.96065 6.00442 6.02320 6.18549 6.24491 6.31691 6.42868 6.47257 6.59849 6.66072 6.77908 6.93750 7.02498 7.12512 7.51373 7.69722 8.14198 8.41938 8.85076 9.53714 10.10784 10.46589 11.46378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.005683 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.887408 B = 4925.632681 C = 6468.523901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.110 4.110 3 C -0.033 4.033 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.052 3.948 7 C -0.221 4.221 8 C 0.593 3.407 9 O -0.550 6.550 10 N -0.708 5.708 11 C 0.171 3.829 12 H 0.087 0.913 13 C 0.148 3.852 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.162 4.162 24 C -0.173 4.173 25 C -0.184 4.184 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.399 0.601 32 H 0.034 0.966 33 H 0.023 0.977 34 H 0.387 0.613 35 H 0.255 0.745 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 9.336 13.255 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C -0.161 4.161 4 N -0.146 5.146 5 H 0.251 0.749 6 C -0.085 4.085 7 C -0.231 4.231 8 C 0.382 3.618 9 O -0.430 6.430 10 N -0.357 5.357 11 C 0.066 3.934 12 H 0.105 0.895 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.182 4.182 24 C -0.210 4.210 25 C -0.221 4.221 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.182 0.818 30 H 0.190 0.810 31 H 0.234 0.766 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.906 9.108 13.187 16.496 hybrid contribution 1.641 0.130 -0.788 1.825 sum -2.265 9.238 12.399 15.627 Atomic orbital electron populations 1.20165 0.89533 1.02550 1.01574 1.20529 0.95518 0.90463 1.05182 1.21501 0.82592 0.99016 1.12951 1.41449 1.08154 1.06723 1.58235 0.74865 1.22004 0.98867 0.83712 1.03883 1.20423 0.92532 0.93047 1.17142 1.17316 0.85454 0.83926 0.75148 1.90628 1.17348 1.83673 1.51389 1.45781 1.09565 1.05646 1.74684 1.20738 0.99602 0.80143 0.92910 0.89484 1.20916 0.93724 0.95454 0.87914 1.42362 1.44995 1.36760 1.13497 1.19215 1.11452 1.09667 0.96887 0.91180 1.24742 1.00117 0.98333 0.97661 1.69679 1.44154 1.25704 1.18295 0.86207 0.81398 0.78402 0.80258 1.21717 1.21869 1.20801 1.22649 0.93091 1.05159 0.97312 1.22890 0.99120 0.95652 1.03381 1.23272 1.03050 0.96580 0.99156 0.92158 0.92712 0.90167 0.81758 0.81047 0.76645 0.94804 0.95893 0.77897 0.93551 0.88116 0.88783 0.89403 0.90134 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.97 36.01 0.36 -0.72 16 2 C -0.11 -1.58 6.35 -102.54 -0.65 -2.23 16 3 C -0.03 -0.37 11.82 -16.83 -0.20 -0.57 16 4 N -0.55 -5.60 5.90 -12.85 -0.08 -5.67 16 5 H 0.42 2.70 8.96 -40.82 -0.37 2.33 16 6 C 0.05 0.66 11.40 -16.84 -0.19 0.46 16 7 C -0.22 -3.49 6.29 -103.35 -0.65 -4.14 16 8 C 0.59 10.62 7.14 -12.59 -0.09 10.53 16 9 O -0.55 -11.04 12.34 5.25 0.06 -10.98 16 10 N -0.71 -12.02 4.49 -54.93 -0.25 -12.27 16 11 C 0.17 3.02 2.43 -67.93 -0.17 2.86 16 12 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 13 C 0.15 2.95 5.80 -4.04 -0.02 2.93 16 14 N -0.73 -18.28 5.43 -59.91 -0.33 -18.60 16 15 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.16 -2.44 5.36 -90.62 -0.49 -2.93 16 24 C -0.17 -2.42 10.18 -26.69 -0.27 -2.69 16 25 C -0.18 -2.71 9.74 -26.69 -0.26 -2.97 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.26 6.86 -51.93 -0.36 0.91 16 29 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.17 1.84 7.45 -52.49 -0.39 1.45 16 31 H 0.40 6.37 7.55 -40.82 -0.31 6.06 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.39 10.40 7.33 -40.82 -0.30 10.10 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.12 2.06 5.01 -51.93 -0.26 1.80 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -33.29 333.79 -8.43 -41.73 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -5.71 Total: 17.61 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.88 Total: -6.72 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.08 Total: -63.89 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.29 -8.43 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498864605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.216 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds