Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34485 * 126.83907 * 2 1 4 4 N 1.36438 * 108.85540 * 180.25807 * 3 2 1 5 5 H 0.97005 * 124.84729 * 179.73204 * 4 3 2 6 6 C 1.34658 * 110.30407 * 359.75067 * 4 3 2 7 7 C 1.36769 * 108.39002 * 0.02562 * 6 4 3 8 8 C 1.47267 * 126.93649 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00000 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00403 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00358 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46951 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.47313 * 210.00112 * 19 17 15 22 22 H 1.48501 * 109.46991 * 330.00153 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 H 1.08997 * 109.47076 * 270.14620 * 1 2 3 27 27 H 1.09003 * 109.47284 * 30.14253 * 1 2 3 28 28 H 1.08998 * 109.47824 * 150.14188 * 1 2 3 29 29 H 1.08000 * 125.56521 * 0.04115 * 3 2 1 30 30 H 1.08001 * 125.80329 * 180.02562 * 6 4 3 31 31 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 33 33 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 35 35 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 36 36 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 37 37 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 38 38 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 39 39 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 40 40 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6110 0.6551 -0.0058 5 1 4.3840 1.2412 -0.0107 6 6 3.6656 -0.6904 -0.0042 7 6 2.3863 -1.1741 0.0023 8 6 1.9748 -2.5881 0.0056 9 8 0.7935 -2.8777 0.0110 10 7 2.9071 -3.5613 0.0028 11 6 2.4978 -4.9680 0.0055 12 1 1.5856 -5.0820 -0.5802 13 6 3.6080 -5.8235 -0.6078 14 7 3.9373 -5.3136 -1.9412 15 6 4.9102 -5.9242 -2.6868 16 1 5.4344 -6.7820 -2.2920 17 6 5.2225 -5.4408 -3.9498 18 7 4.5840 -4.3951 -4.4308 19 14 6.5491 -6.2742 -4.9672 20 1 5.9376 -7.3417 -5.7990 21 1 7.2001 -5.2718 -5.8485 22 1 7.5642 -6.8718 -4.0630 23 6 2.2402 -5.4213 1.4439 24 6 0.9073 -6.1121 1.7390 25 6 1.1560 -4.6849 2.2333 26 1 -0.3633 0.0026 1.0276 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3635 -0.8912 -0.5116 29 1 1.9868 2.1058 0.0006 30 1 4.5664 -1.2862 -0.0074 31 1 3.8493 -3.3304 -0.0018 32 1 3.2689 -6.8564 -0.6873 33 1 4.4931 -5.7795 0.0268 34 1 3.4667 -4.5430 -2.2955 35 1 4.8025 -4.0570 -5.3133 36 1 3.1172 -5.7643 1.9929 37 1 0.2137 -6.2432 0.9084 38 1 0.9073 -6.9093 2.4823 39 1 1.3195 -4.5438 3.3017 40 1 0.6265 -3.8772 1.7281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498864605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = 18.867458 kcal Electronic energy + Delta-G solvation = -21631.722285 eV Core-core repulsion = 18447.214849 eV Total energy + Delta-G solvation = -3184.507436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03588 -40.52658 -38.17015 -36.58565 -34.90852 -33.27508 -33.03713 -30.98012 -29.20524 -27.38756 -25.93917 -24.13752 -23.14739 -23.01586 -21.43559 -20.82844 -20.13395 -19.25233 -18.98703 -17.40146 -16.95171 -16.56043 -16.46406 -15.83600 -15.42223 -15.07047 -14.94171 -14.69684 -14.39453 -14.28926 -14.06228 -13.57300 -13.52134 -13.22431 -13.15172 -12.78824 -12.66038 -12.47815 -12.30378 -12.17998 -12.04936 -11.82656 -11.21856 -11.05317 -10.96896 -10.63481 -9.87878 -9.45206 -9.11939 -8.99799 -7.92057 -5.22258 0.87164 1.48815 1.50908 1.55821 1.58971 2.28422 2.51294 2.57653 2.68092 3.10800 3.41766 3.62842 3.99377 4.05189 4.12574 4.17636 4.21302 4.32428 4.38609 4.50547 4.55885 4.67121 4.76670 4.84427 4.93580 4.94562 4.98677 5.07884 5.15523 5.20257 5.32748 5.38195 5.45876 5.51820 5.71401 5.89992 6.02109 6.27622 6.72846 6.82317 7.35011 7.50778 8.08407 8.33200 9.30786 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.005683 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.887408 B = 4925.632681 C = 6468.523901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.060 3.940 7 C -0.265 4.265 8 C 0.585 3.415 9 O -0.583 6.583 10 N -0.704 5.704 11 C 0.181 3.819 12 H 0.053 0.947 13 C 0.151 3.849 14 N -0.742 5.742 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.292 1.292 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.182 4.182 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.205 0.795 30 H 0.189 0.811 31 H 0.404 0.596 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 9.900 14.583 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.157 4.157 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.276 0.724 6 C -0.078 4.078 7 C -0.276 4.276 8 C 0.376 3.624 9 O -0.465 6.465 10 N -0.353 5.353 11 C 0.076 3.924 12 H 0.071 0.929 13 C 0.024 3.976 14 N -0.385 5.385 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.219 1.219 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.183 4.183 24 C -0.202 4.202 25 C -0.219 4.219 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.222 0.778 30 H 0.206 0.794 31 H 0.239 0.761 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.195 9.665 14.560 17.613 hybrid contribution 1.090 -0.017 -1.159 1.591 sum -1.105 9.648 13.401 16.550 Atomic orbital electron populations 1.20074 0.89646 1.01889 1.01601 1.20814 0.96109 0.91147 1.07642 1.22005 0.82209 0.99864 1.09768 1.41491 1.08889 1.06104 1.56365 0.72368 1.22183 0.98291 0.84930 1.02413 1.20499 0.94533 0.92245 1.20309 1.17762 0.85083 0.85082 0.74489 1.90604 1.18632 1.84323 1.52973 1.45714 1.09724 1.05270 1.74621 1.20492 0.97208 0.80513 0.94222 0.92866 1.21032 0.94977 0.95579 0.85989 1.42529 1.44474 1.36354 1.15163 1.19640 1.11268 1.09426 0.97119 0.90257 1.25554 1.02694 0.99282 0.99059 1.69851 1.46106 1.27533 1.18409 0.85140 0.78985 0.77038 0.78552 1.21906 1.22352 1.19055 1.22571 0.94306 1.05855 0.95568 1.22974 0.97810 0.96016 1.03392 1.23180 1.02589 0.96233 0.99927 0.91854 0.90310 0.93732 0.77845 0.79416 0.76068 0.94679 0.94029 0.79427 0.94192 0.86043 0.90213 0.86534 0.87983 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 9.97 71.24 0.71 -1.32 16 2 C -0.15 -4.27 6.35 -18.52 -0.12 -4.39 16 3 C -0.01 -0.20 11.82 83.12 0.98 0.78 16 4 N -0.53 -9.40 5.90 -194.56 -1.15 -10.55 16 5 H 0.44 4.13 8.96 -92.70 -0.83 3.30 16 6 C 0.06 1.46 11.40 83.92 0.96 2.41 16 7 C -0.27 -8.50 6.29 -19.04 -0.12 -8.62 16 8 C 0.59 21.98 7.14 86.62 0.62 22.60 16 9 O -0.58 -25.06 12.34 -4.12 -0.05 -25.11 16 10 N -0.70 -24.55 4.49 -445.95 -2.00 -26.55 16 11 C 0.18 6.52 2.43 44.99 0.11 6.63 16 12 H 0.05 2.28 7.33 -2.39 -0.02 2.26 16 13 C 0.15 5.97 5.80 86.38 0.50 6.47 16 14 N -0.74 -37.44 5.43 -343.45 -1.87 -39.30 16 15 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 18 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 19 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C -0.16 -4.78 5.36 -10.80 -0.06 -4.83 16 24 C -0.16 -4.45 10.18 30.62 0.31 -4.14 16 25 C -0.18 -5.30 9.74 30.62 0.30 -5.01 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 29 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.19 3.78 7.45 -2.91 -0.02 3.76 16 31 H 0.40 12.99 7.55 -92.70 -0.70 12.29 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.37 20.69 7.33 -92.71 -0.68 20.01 16 35 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.12 3.08 8.11 -2.39 -0.02 3.06 16 37 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 38 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.09 3.30 5.01 -2.39 -0.01 3.29 16 Total: -1.00 -73.96 333.79 1.61 -72.35 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -1.13 Total: 46.25 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.50 Total: -5.64 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -4.73 Total: -135.54 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -73.96 1.61 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498864605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.217 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds