Wall clock time and date at job start Mon Mar 30 2020 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46205 * 2 1 4 4 C 1.36943 * 120.00248 * 59.99786 * 3 2 1 5 5 H 1.07997 * 119.99524 * 0.02562 * 4 3 2 6 6 C 1.38804 * 119.99928 * 180.02562 * 4 3 2 7 7 N 1.31613 * 120.00426 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99691 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47308 * 269.99894 * 8 6 4 10 10 H 1.48500 * 109.47124 * 30.00202 * 8 6 4 11 11 H 1.48506 * 109.46881 * 150.00204 * 8 6 4 12 12 C 1.53040 * 109.46072 * 119.97082 * 2 1 3 13 13 C 1.53161 * 109.33033 * 181.38464 * 12 2 1 14 14 N 1.46927 * 108.76990 * 305.35457 * 13 12 2 15 15 C 1.34767 * 120.63325 * 233.58944 * 14 13 12 16 16 O 1.21630 * 120.00262 * 173.73707 * 15 14 13 17 17 C 1.47266 * 120.00142 * 353.73279 * 15 14 13 18 18 C 1.46693 * 126.94213 * 332.67853 * 17 15 14 19 19 C 1.34480 * 106.32901 * 179.82400 * 18 17 15 20 20 N 1.36454 * 108.86097 * 0.43620 * 19 18 17 21 21 H 0.97000 * 124.85278 * 179.68821 * 20 19 18 22 22 C 1.34659 * 110.29363 * 359.71017 * 20 19 18 23 23 C 1.46934 * 118.73419 * 53.60993 * 14 13 12 24 24 C 1.53040 * 109.46291 * 240.02425 * 2 1 3 25 25 H 1.09003 * 109.46722 * 59.99770 * 1 2 3 26 26 H 1.08997 * 109.47675 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46871 * 300.00182 * 1 2 3 28 28 H 0.96998 * 119.99829 * 239.99871 * 3 2 1 29 29 H 0.97005 * 120.00515 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.50036 * 301.32367 * 12 2 1 31 31 H 1.09001 * 109.49846 * 61.41640 * 12 2 1 32 32 H 1.08998 * 109.59100 * 185.57096 * 13 12 2 33 33 H 1.09001 * 109.70557 * 65.21337 * 13 12 2 34 34 H 1.07996 * 126.83023 * 359.97438 * 18 17 15 35 35 H 1.08001 * 125.57074 * 180.14754 * 19 18 17 36 36 H 1.07996 * 125.79725 * 179.97438 * 22 20 19 37 37 H 1.08994 * 109.58423 * 186.60713 * 23 14 13 38 38 H 1.08999 * 109.58362 * 66.17886 * 23 14 13 39 39 H 1.09003 * 109.49667 * 298.58446 * 24 2 1 40 40 H 1.09008 * 109.49414 * 58.64584 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6871 2.2245 1.0270 5 1 1.0666 1.8710 1.8372 6 6 2.1492 3.5334 1.0267 7 7 2.9050 3.9643 0.0391 8 14 1.6982 4.6834 2.4281 9 1 0.4350 5.3917 2.1002 10 1 1.5157 3.8970 3.6745 11 1 2.7857 5.6756 2.6235 12 6 2.0398 -0.7208 1.2500 13 6 3.5710 -0.6889 1.2646 14 7 4.0676 -1.2494 0.0004 15 6 4.9615 -2.2579 0.0006 16 8 5.2789 -2.7895 -1.0463 17 6 5.5541 -2.7164 1.2684 18 6 5.7534 -1.9232 2.4862 19 6 6.3191 -2.7473 3.3858 20 7 6.4899 -3.9744 2.8138 21 1 6.8831 -4.7426 3.2568 22 6 6.0352 -3.9662 1.5464 23 6 3.5714 -0.6890 -1.2640 24 6 2.0399 -0.7209 -1.2499 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.5757 1.6986 -0.7275 29 1 3.2282 4.8789 0.0391 30 1 1.6574 -0.2207 2.1399 31 1 1.6975 -1.7557 1.2383 32 1 3.9411 -1.2849 2.0988 33 1 3.9162 0.3397 1.3689 34 1 5.4948 -0.8849 2.6320 35 1 6.5974 -2.4803 4.3946 36 1 6.0485 -4.8040 0.8650 37 1 3.9416 -1.2851 -2.0980 38 1 3.9146 0.3404 -1.3670 39 1 1.6976 -1.7558 -1.2381 40 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502780788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:35 Heat of formation + Delta-G solvation = 32.925772 kcal Electronic energy + Delta-G solvation = -22346.304876 eV Core-core repulsion = 19162.407054 eV Total energy + Delta-G solvation = -3183.897822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13788 -39.37232 -37.45198 -34.32905 -32.37038 -31.43561 -30.07859 -29.18580 -28.89112 -27.54617 -24.10051 -23.34606 -22.89551 -21.28089 -20.62338 -19.15758 -18.64899 -17.49293 -17.01683 -15.94595 -15.25188 -14.91753 -14.60719 -13.99216 -13.89113 -13.81908 -13.62203 -13.42664 -13.24677 -12.81886 -12.77419 -12.31905 -11.93332 -11.75517 -11.45606 -11.18048 -11.09500 -10.86087 -10.73002 -10.57161 -10.22250 -10.12812 -9.59978 -9.47541 -9.39347 -8.89841 -8.64797 -8.38247 -7.95628 -6.90457 -5.73069 -3.00882 1.96725 2.47357 3.15066 3.44044 3.49440 3.51316 3.60726 3.79520 4.61267 4.94261 5.06730 5.18450 5.42160 5.46919 5.50971 5.58306 5.66776 5.75129 5.85042 5.92397 5.95458 6.08173 6.17876 6.24360 6.33398 6.38530 6.50657 6.58464 6.62071 6.69935 6.74460 6.85788 6.95789 6.99252 7.12185 7.22823 7.40648 7.74726 8.02357 8.45415 8.70710 9.56862 10.15086 10.50670 11.49630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.005616 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.360289 B = 4984.756862 C = 5719.957972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 N -0.716 5.716 4 C -0.229 4.229 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.933 5.933 8 Si 0.901 3.099 9 H -0.292 1.292 10 H -0.283 1.283 11 H -0.293 1.293 12 C -0.133 4.133 13 C 0.103 3.897 14 N -0.592 5.592 15 C 0.586 3.414 16 O -0.569 6.569 17 C -0.221 4.221 18 C -0.167 4.167 19 C -0.023 4.023 20 N -0.558 5.558 21 H 0.415 0.585 22 C 0.061 3.939 23 C 0.117 3.883 24 C -0.128 4.128 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.384 0.616 29 H 0.254 0.746 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -15.323 5.720 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.105 3.895 3 N -0.358 5.358 4 C -0.360 4.360 5 H 0.088 0.912 6 C -0.209 4.209 7 N -0.581 5.581 8 Si 0.732 3.268 9 H -0.220 1.220 10 H -0.209 1.209 11 H -0.220 1.220 12 C -0.174 4.174 13 C -0.019 4.019 14 N -0.323 5.323 15 C 0.376 3.624 16 O -0.450 6.450 17 C -0.232 4.232 18 C -0.191 4.191 19 C -0.151 4.151 20 N -0.152 5.152 21 H 0.251 0.749 22 C -0.074 4.074 23 C -0.006 4.006 24 C -0.167 4.167 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.218 0.782 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.404 -15.559 5.400 17.048 hybrid contribution -0.026 0.690 0.875 1.115 sum 4.378 -14.869 6.275 16.722 Atomic orbital electron populations 1.22220 0.97777 0.98906 1.01991 1.19547 0.91969 0.86218 0.91744 1.42505 1.60618 1.05758 1.26942 1.19117 1.25134 0.91588 1.00144 0.91229 1.24679 1.00738 0.97340 0.98142 1.69650 1.39456 1.16706 1.32327 0.86289 0.77389 0.81149 0.81944 1.21964 1.20886 1.21978 1.22290 0.95227 0.98904 1.00959 1.22182 0.94713 1.00069 0.84907 1.47854 1.41960 1.34352 1.08110 1.17432 0.78483 0.79017 0.87459 1.90711 1.63454 1.57507 1.33326 1.20438 1.11916 0.95139 0.95672 1.22363 1.04512 1.00077 0.92136 1.21803 1.08212 0.85080 0.99978 1.41593 1.49638 1.12296 1.11722 0.74935 1.21720 1.00290 0.99046 0.86380 1.21542 0.93991 0.99186 0.85857 1.22070 0.95154 1.00253 0.99186 0.93225 0.94667 0.92652 0.78162 0.93638 0.90929 0.93547 0.89323 0.89711 0.82803 0.81494 0.81009 0.90015 0.90650 0.92044 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.44 37.16 0.31 -2.39 16 2 C 0.20 3.73 0.74 -131.78 -0.10 3.63 16 3 N -0.72 -16.60 4.14 -47.20 -0.20 -16.80 16 4 C -0.23 -5.88 8.68 -15.06 -0.13 -6.01 16 5 H 0.07 1.75 6.70 -52.49 -0.35 1.40 16 6 C -0.01 -0.36 5.50 -17.44 -0.10 -0.46 16 7 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 8 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 C -0.13 -2.35 4.70 -26.63 -0.13 -2.48 16 13 C 0.10 1.79 5.01 -3.73 -0.02 1.77 16 14 N -0.59 -10.61 2.97 -174.11 -0.52 -11.13 16 15 C 0.59 10.68 7.64 -12.60 -0.10 10.58 16 16 O -0.57 -11.76 16.43 5.25 0.09 -11.68 16 17 C -0.22 -3.33 5.70 -103.35 -0.59 -3.92 16 18 C -0.17 -2.19 8.63 -37.50 -0.32 -2.51 16 19 C -0.02 -0.23 11.89 -16.82 -0.20 -0.43 16 20 N -0.56 -4.84 5.90 -12.85 -0.08 -4.92 16 21 H 0.41 1.99 8.96 -40.82 -0.37 1.63 16 22 C 0.06 0.72 11.79 -16.84 -0.20 0.52 16 23 C 0.12 2.12 6.17 -3.71 -0.02 2.09 16 24 C -0.13 -2.21 4.96 -26.61 -0.13 -2.34 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.06 7.27 -51.92 -0.38 0.68 16 28 H 0.38 9.68 6.46 -40.82 -0.26 9.42 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.07 1.33 7.31 -51.92 -0.38 0.95 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.37 4.04 -51.93 -0.21 1.16 16 33 H 0.08 1.71 7.74 -51.93 -0.40 1.31 16 34 H 0.15 2.06 6.50 -52.49 -0.34 1.72 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 38 H 0.08 1.49 6.94 -51.93 -0.36 1.13 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -32.06 317.28 -7.45 -39.51 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.51 Total: 11.97 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.72 Total: -1.93 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.06 Total: -59.37 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.06 -7.45 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502780788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.434 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds