Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.90050 * 2 1 4 4 N 1.40087 * 108.20445 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03126 * 180.02562 * 4 3 2 6 6 C 1.34944 * 107.92446 * 359.75776 * 4 3 2 7 7 C 1.35309 * 107.74917 * 0.39191 * 6 4 3 8 8 C 1.50703 * 126.04003 * 179.86938 * 7 6 4 9 9 C 1.50696 * 109.47370 * 264.68822 * 8 7 6 10 10 O 1.21283 * 119.99673 * 5.48497 * 9 8 7 11 11 N 1.34779 * 119.99959 * 185.47784 * 9 8 7 12 12 C 1.46506 * 119.99623 * 185.08861 * 11 9 8 13 13 C 1.52995 * 109.46640 * 184.10278 * 12 11 9 14 14 C 1.50699 * 115.55065 * 294.91980 * 13 12 11 15 15 H 1.08001 * 119.99873 * 114.82240 * 14 13 12 16 16 C 1.37880 * 120.00433 * 294.55109 * 14 13 12 17 17 N 1.31515 * 120.00451 * 174.39070 * 16 14 13 18 18 Si 1.86807 * 119.99520 * 354.38827 * 16 14 13 19 19 H 1.48493 * 109.47240 * 93.65882 * 18 16 14 20 20 H 1.48499 * 109.46842 * 213.65690 * 18 16 14 21 21 H 1.48501 * 109.47159 * 333.65408 * 18 16 14 22 22 C 1.53004 * 117.50350 * 80.59451 * 13 12 11 23 23 C 1.52999 * 117.49971 * 149.25715 * 13 12 11 24 24 H 1.09004 * 109.46965 * 269.96815 * 1 2 3 25 25 H 1.09003 * 109.47243 * 29.96941 * 1 2 3 26 26 H 1.08997 * 109.47151 * 149.97147 * 1 2 3 27 27 H 1.09003 * 109.47222 * 89.97632 * 5 4 3 28 28 H 1.09006 * 109.46578 * 209.96840 * 5 4 3 29 29 H 1.08998 * 109.47482 * 329.96592 * 5 4 3 30 30 H 1.08008 * 126.12376 * 180.24052 * 6 4 3 31 31 H 1.09006 * 109.46692 * 144.68903 * 8 7 6 32 32 H 1.09001 * 109.47266 * 24.69726 * 8 7 6 33 33 H 0.96992 * 120.00261 * 5.09334 * 11 9 8 34 34 H 1.08993 * 109.47405 * 64.10057 * 12 11 9 35 35 H 1.08998 * 109.46694 * 304.09821 * 12 11 9 36 36 H 0.96996 * 119.99986 * 179.97438 * 17 16 14 37 37 H 1.08999 * 117.50083 * 214.99880 * 22 13 12 38 38 H 1.08998 * 117.49590 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.49833 * 359.97166 * 23 13 12 40 40 H 1.09002 * 117.50648 * 144.97059 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6142 -0.7154 0.0045 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0005 9 6 1.5855 -3.0049 -1.4157 10 8 1.8466 -2.2659 -2.3413 11 7 1.0499 -4.2188 -1.6528 12 6 0.8863 -4.6908 -3.0301 13 6 0.1679 -6.0416 -3.0241 14 6 0.9225 -7.1763 -2.3807 15 1 0.5427 -7.6353 -1.4800 16 6 2.0950 -7.6322 -2.9451 17 7 2.8109 -8.5458 -2.3266 18 14 2.6667 -6.9523 -4.5884 19 1 3.5997 -5.8202 -4.3582 20 1 3.3625 -8.0199 -5.3508 21 1 1.4923 -6.4763 -5.3627 22 6 -1.3548 -6.0314 -2.8748 23 6 -0.7200 -6.3748 -4.2247 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5143 27 1 5.0828 1.7154 1.0275 28 1 5.6094 0.9982 -0.5142 29 1 4.5564 2.4334 -0.5139 30 1 4.4891 -1.3486 0.0091 31 1 0.9473 -2.6502 0.5896 32 1 2.6330 -3.2001 0.4334 33 1 0.7728 -4.7798 -0.9117 34 1 1.8659 -4.8023 -3.4948 35 1 0.2967 -3.9681 -3.5941 36 1 3.6355 -8.8667 -2.7238 37 1 -1.8107 -6.8453 -2.3111 38 1 -1.8448 -5.0622 -2.7811 39 1 -0.7927 -5.6314 -5.0186 40 1 -0.7581 -7.4146 -4.5495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524795869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = 59.481004 kcal Electronic energy + Delta-G solvation = -21348.988051 eV Core-core repulsion = 18166.241751 eV Total energy + Delta-G solvation = -3182.746301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22230 -38.96999 -36.97354 -34.13420 -33.29207 -32.19022 -31.82374 -29.73010 -28.04080 -26.47838 -25.25606 -24.29525 -21.65140 -20.85046 -19.99261 -19.45363 -18.97715 -16.95428 -16.50469 -16.20754 -15.38781 -15.23635 -14.96767 -14.69089 -14.08931 -13.75446 -13.49807 -13.46396 -13.02773 -12.87214 -12.77378 -12.54239 -12.28701 -12.12532 -12.06742 -11.98450 -11.52118 -11.07525 -10.71646 -10.59063 -10.41677 -10.25617 -9.61987 -9.34549 -9.13871 -9.11658 -8.78136 -8.51847 -8.23582 -8.19710 -6.18688 -4.21200 1.94681 2.53751 2.78688 3.22221 3.28424 3.38012 3.44630 3.96367 4.38339 4.45499 4.83139 4.89582 4.99025 5.00533 5.18752 5.19231 5.23365 5.33064 5.45849 5.59343 5.65874 5.72060 5.78179 5.93796 5.98585 6.08283 6.14794 6.18843 6.27305 6.45812 6.54471 6.71910 6.76256 6.96391 7.06056 7.08190 7.22380 7.66991 7.79243 8.27576 8.40513 8.82724 8.88930 9.45352 10.92286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.004454 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.582288 B = 6285.497224 C = 6875.011486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.090 3.910 3 N -0.304 5.304 4 N -0.381 5.381 5 C 0.106 3.894 6 C 0.066 3.934 7 C -0.209 4.209 8 C -0.062 4.062 9 C 0.505 3.495 10 O -0.551 6.551 11 N -0.705 5.705 12 C 0.155 3.845 13 C -0.018 4.018 14 C -0.489 4.489 15 H 0.078 0.922 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.865 3.135 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.248 1.248 22 C -0.180 4.180 23 C -0.186 4.186 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.406 0.594 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 14.683 6.356 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 N -0.127 5.127 4 N -0.163 5.163 5 C -0.036 4.036 6 C -0.079 4.079 7 C -0.220 4.220 8 C -0.104 4.104 9 C 0.290 3.710 10 O -0.430 6.430 11 N -0.355 5.355 12 C 0.031 3.969 13 C -0.019 4.019 14 C -0.526 4.526 15 H 0.096 0.904 16 C -0.119 4.119 17 N -0.530 5.530 18 Si 0.693 3.307 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.172 1.172 22 C -0.217 4.217 23 C -0.224 4.224 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.189 0.811 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.241 0.759 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.486 16.448 5.669 17.404 hybrid contribution 0.592 -0.998 -0.659 1.334 sum 1.078 15.450 5.009 16.278 Atomic orbital electron populations 1.20164 0.86919 1.03474 1.02543 1.22141 0.96725 0.90223 0.98596 1.77225 0.86389 1.22754 1.26312 1.48207 1.05437 1.04659 1.57965 1.21782 0.83834 0.94992 1.02945 1.22244 0.99196 0.84811 1.01666 1.19345 0.91905 0.94860 1.15934 1.19911 1.03204 0.92331 0.94905 1.20625 0.77594 0.81507 0.91245 1.90654 1.52717 1.53605 1.46004 1.45868 1.62462 1.17258 1.09923 1.21026 0.99518 0.94230 0.82095 1.19618 0.89231 0.93967 0.99062 1.20239 1.06328 1.14516 1.11490 0.90378 1.24900 0.95794 0.94243 0.97011 1.69891 1.14698 1.29917 1.38474 0.87046 0.79906 0.78577 0.85212 1.20504 1.21858 1.17196 1.22795 0.97138 1.00792 1.00954 1.23029 1.07356 1.01066 0.90983 0.90606 0.91058 0.90438 0.91059 0.89627 0.89538 0.81127 0.88554 0.88232 0.75906 0.92791 0.93427 0.92493 0.89633 0.90893 0.91169 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.21 36.00 0.37 -0.49 16 2 C 0.09 1.34 7.22 -82.40 -0.59 0.75 16 3 N -0.30 -4.73 12.58 33.67 0.42 -4.31 16 4 N -0.38 -5.07 4.01 -68.16 -0.27 -5.35 16 5 C 0.11 0.88 11.47 59.85 0.69 1.56 16 6 C 0.07 0.89 11.40 -17.23 -0.20 0.70 16 7 C -0.21 -3.07 4.60 -105.05 -0.48 -3.56 16 8 C -0.06 -0.85 5.82 -29.04 -0.17 -1.02 16 9 C 0.50 9.12 7.81 -10.99 -0.09 9.04 16 10 O -0.55 -12.12 16.04 5.55 0.09 -12.03 16 11 N -0.70 -13.15 5.48 -60.30 -0.33 -13.48 16 12 C 0.15 3.31 5.15 -4.04 -0.02 3.28 16 13 C -0.02 -0.38 0.84 -155.66 -0.13 -0.51 16 14 C -0.49 -12.60 9.15 -34.44 -0.32 -12.92 16 15 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 16 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 18 Si 0.87 21.14 24.97 -169.99 -4.24 16.90 16 19 H -0.28 -6.96 7.03 56.52 0.40 -6.57 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.25 -5.74 5.72 56.52 0.32 -5.41 16 22 C -0.18 -3.40 9.96 -26.69 -0.27 -3.66 16 23 C -0.19 -3.78 8.02 -26.69 -0.21 -4.00 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.41 6.95 8.34 -40.82 -0.34 6.61 16 34 H 0.05 1.28 5.07 -51.93 -0.26 1.02 16 35 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -33.94 337.40 -6.14 -40.08 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.15 Total: 6.91 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.52 Total: -8.63 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.59 Total: -48.32 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.24 Total: 16.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.94 -6.14 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524795869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.564 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds