Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.90050 * 2 1 4 4 N 1.40087 * 108.20445 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03126 * 180.02562 * 4 3 2 6 6 C 1.34944 * 107.92446 * 359.75776 * 4 3 2 7 7 C 1.35309 * 107.74917 * 0.39191 * 6 4 3 8 8 C 1.50703 * 126.04003 * 179.86938 * 7 6 4 9 9 C 1.50696 * 109.47370 * 264.68822 * 8 7 6 10 10 O 1.21283 * 119.99673 * 5.48497 * 9 8 7 11 11 N 1.34779 * 119.99959 * 185.47784 * 9 8 7 12 12 C 1.46506 * 119.99623 * 185.08861 * 11 9 8 13 13 C 1.52995 * 109.46640 * 184.10278 * 12 11 9 14 14 C 1.50699 * 115.55065 * 294.91980 * 13 12 11 15 15 H 1.08001 * 119.99873 * 114.82240 * 14 13 12 16 16 C 1.37880 * 120.00433 * 294.55109 * 14 13 12 17 17 N 1.31515 * 120.00451 * 174.39070 * 16 14 13 18 18 Si 1.86807 * 119.99520 * 354.38827 * 16 14 13 19 19 H 1.48493 * 109.47240 * 93.65882 * 18 16 14 20 20 H 1.48499 * 109.46842 * 213.65690 * 18 16 14 21 21 H 1.48501 * 109.47159 * 333.65408 * 18 16 14 22 22 C 1.53004 * 117.50350 * 80.59451 * 13 12 11 23 23 C 1.52999 * 117.49971 * 149.25715 * 13 12 11 24 24 H 1.09004 * 109.46965 * 269.96815 * 1 2 3 25 25 H 1.09003 * 109.47243 * 29.96941 * 1 2 3 26 26 H 1.08997 * 109.47151 * 149.97147 * 1 2 3 27 27 H 1.09003 * 109.47222 * 89.97632 * 5 4 3 28 28 H 1.09006 * 109.46578 * 209.96840 * 5 4 3 29 29 H 1.08998 * 109.47482 * 329.96592 * 5 4 3 30 30 H 1.08008 * 126.12376 * 180.24052 * 6 4 3 31 31 H 1.09006 * 109.46692 * 144.68903 * 8 7 6 32 32 H 1.09001 * 109.47266 * 24.69726 * 8 7 6 33 33 H 0.96992 * 120.00261 * 5.09334 * 11 9 8 34 34 H 1.08993 * 109.47405 * 64.10057 * 12 11 9 35 35 H 1.08998 * 109.46694 * 304.09821 * 12 11 9 36 36 H 0.96996 * 119.99986 * 179.97438 * 17 16 14 37 37 H 1.08999 * 117.50083 * 214.99880 * 22 13 12 38 38 H 1.08998 * 117.49590 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.49833 * 359.97166 * 23 13 12 40 40 H 1.09002 * 117.50648 * 144.97059 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6142 -0.7154 0.0045 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0005 9 6 1.5855 -3.0049 -1.4157 10 8 1.8466 -2.2659 -2.3413 11 7 1.0499 -4.2188 -1.6528 12 6 0.8863 -4.6908 -3.0301 13 6 0.1679 -6.0416 -3.0241 14 6 0.9225 -7.1763 -2.3807 15 1 0.5427 -7.6353 -1.4800 16 6 2.0950 -7.6322 -2.9451 17 7 2.8109 -8.5458 -2.3266 18 14 2.6667 -6.9523 -4.5884 19 1 3.5997 -5.8202 -4.3582 20 1 3.3625 -8.0199 -5.3508 21 1 1.4923 -6.4763 -5.3627 22 6 -1.3548 -6.0314 -2.8748 23 6 -0.7200 -6.3748 -4.2247 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5143 27 1 5.0828 1.7154 1.0275 28 1 5.6094 0.9982 -0.5142 29 1 4.5564 2.4334 -0.5139 30 1 4.4891 -1.3486 0.0091 31 1 0.9473 -2.6502 0.5896 32 1 2.6330 -3.2001 0.4334 33 1 0.7728 -4.7798 -0.9117 34 1 1.8659 -4.8023 -3.4948 35 1 0.2967 -3.9681 -3.5941 36 1 3.6355 -8.8667 -2.7238 37 1 -1.8107 -6.8453 -2.3111 38 1 -1.8448 -5.0622 -2.7811 39 1 -0.7927 -5.6314 -5.0186 40 1 -0.7581 -7.4146 -4.5495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524795869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = 35.897315 kcal Electronic energy + Delta-G solvation = -21350.010717 eV Core-core repulsion = 18166.241751 eV Total energy + Delta-G solvation = -3183.768966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23306 -40.44855 -38.62245 -35.07513 -34.84813 -34.24185 -32.91319 -30.57919 -29.28498 -28.08305 -26.83233 -25.40372 -23.22698 -21.93407 -21.31180 -21.01641 -20.28881 -18.61224 -17.73016 -17.53996 -16.98927 -16.50048 -16.31195 -16.16329 -15.33973 -15.11005 -14.87276 -14.58969 -14.41524 -14.20950 -14.07636 -13.81270 -13.80825 -13.19160 -13.00425 -12.97605 -12.91550 -12.72654 -12.55683 -12.16683 -12.05263 -11.46713 -11.42957 -11.01012 -10.85949 -10.66508 -10.30165 -10.12576 -9.81001 -9.24941 -8.29253 -6.32164 0.94491 1.31943 1.38999 1.49186 1.66868 1.72865 1.83464 2.35894 2.55762 3.04129 3.39626 3.59722 3.91378 4.04213 4.09546 4.22581 4.33473 4.38914 4.42805 4.43969 4.49463 4.52356 4.58318 4.65435 4.78146 4.81416 4.89224 4.94577 5.03237 5.11250 5.13424 5.18258 5.30736 5.53969 5.67579 5.72495 5.76656 6.16468 6.32935 6.73440 6.77262 6.86546 7.36480 7.46936 8.85014 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.004454 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.582288 B = 6285.497224 C = 6875.011486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.074 3.926 3 N -0.337 5.337 4 N -0.384 5.384 5 C 0.096 3.904 6 C 0.063 3.937 7 C -0.235 4.235 8 C -0.051 4.051 9 C 0.505 3.495 10 O -0.592 6.592 11 N -0.704 5.704 12 C 0.162 3.838 13 C -0.041 4.041 14 C -0.473 4.473 15 H 0.049 0.951 16 C 0.037 3.963 17 N -0.939 5.939 18 Si 0.912 3.088 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.226 1.226 22 C -0.152 4.152 23 C -0.186 4.186 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.197 0.803 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.413 0.587 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 15.857 6.538 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 N -0.161 5.161 4 N -0.165 5.165 5 C -0.044 4.044 6 C -0.084 4.084 7 C -0.247 4.247 8 C -0.092 4.092 9 C 0.293 3.707 10 O -0.473 6.473 11 N -0.355 5.355 12 C 0.037 3.963 13 C -0.042 4.042 14 C -0.510 4.510 15 H 0.067 0.933 16 C -0.162 4.162 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.149 1.149 22 C -0.189 4.189 23 C -0.224 4.224 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.213 0.787 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.249 0.751 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.242 17.638 5.863 18.589 hybrid contribution 0.810 -1.326 -0.658 1.688 sum 0.569 16.312 5.204 17.132 Atomic orbital electron populations 1.20232 0.85481 1.03252 1.03969 1.22611 0.97987 0.90289 0.98322 1.77153 0.87684 1.23653 1.27622 1.48621 1.05759 1.05244 1.56912 1.22148 0.82847 0.94756 1.04659 1.22745 0.99879 0.85310 1.00449 1.19585 0.92555 0.95176 1.17399 1.19913 1.05114 0.92122 0.92031 1.21383 0.76093 0.80532 0.92677 1.90632 1.54282 1.54643 1.47769 1.45870 1.62685 1.17714 1.09190 1.20791 0.97963 0.93973 0.83524 1.19458 0.90806 0.92894 1.01059 1.20379 1.05885 1.14645 1.10126 0.93287 1.25502 0.96391 0.94698 0.99580 1.70000 1.15567 1.32122 1.40149 0.86299 0.79916 0.77318 0.82578 1.21688 1.22364 1.14870 1.22841 0.94532 1.02170 0.99353 1.23075 1.06357 1.01300 0.91697 0.88314 0.91113 0.90723 0.89058 0.87467 0.89370 0.78653 0.85776 0.86405 0.75054 0.95539 0.92691 0.92695 0.89439 0.88210 0.89293 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.21 71.24 0.73 -0.86 16 2 C 0.07 2.12 7.22 43.10 0.31 2.43 16 3 N -0.34 -10.23 12.58 -47.38 -0.60 -10.83 16 4 N -0.38 -9.68 4.01 -369.56 -1.48 -11.16 16 5 C 0.10 1.41 11.47 127.77 1.47 2.87 16 6 C 0.06 1.59 11.40 83.54 0.95 2.54 16 7 C -0.24 -6.56 4.60 -20.14 -0.09 -6.65 16 8 C -0.05 -1.29 5.82 29.10 0.17 -1.12 16 9 C 0.51 17.54 7.81 87.66 0.68 18.22 16 10 O -0.59 -25.57 16.04 -3.04 -0.05 -25.62 16 11 N -0.70 -25.19 5.48 -463.06 -2.54 -27.72 16 12 C 0.16 6.65 5.15 86.38 0.45 7.10 16 13 C -0.04 -1.71 0.84 -52.93 -0.04 -1.76 16 14 C -0.47 -24.27 9.15 25.60 0.23 -24.04 16 15 H 0.05 2.76 8.06 -2.91 -0.02 2.73 16 16 C 0.04 2.03 5.47 84.66 0.46 2.50 16 17 N -0.94 -55.59 13.96 21.45 0.30 -55.29 16 18 Si 0.91 43.66 24.97 68.60 1.71 45.37 16 19 H -0.29 -14.30 7.03 99.48 0.70 -13.60 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.23 -9.87 5.72 99.48 0.57 -9.30 16 22 C -0.15 -5.27 9.96 30.62 0.30 -4.96 16 23 C -0.19 -7.04 8.02 30.62 0.25 -6.79 16 24 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.68 7.96 -2.39 -0.02 1.67 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.20 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.12 2.40 8.09 -2.38 -0.02 2.38 16 32 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.41 13.46 8.34 -92.71 -0.77 12.69 16 34 H 0.03 1.24 5.07 -2.39 -0.01 1.22 16 35 H 0.05 2.17 8.07 -2.39 -0.02 2.15 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -73.79 337.40 3.34 -70.45 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.12 Total: 25.33 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 5.87 Total: -10.53 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.32 Total: -105.01 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.71 Total: 45.37 kcal Total: -73.79 3.34 -70.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524795869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.348 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds