Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00550 * 2 1 4 4 N 1.46501 * 109.47242 * 125.00102 * 3 2 1 5 5 C 1.46496 * 119.99706 * 270.00114 * 4 3 2 6 6 C 1.50698 * 109.47380 * 269.99935 * 5 4 3 7 7 H 1.08003 * 120.00001 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00377 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00136 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00117 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47430 * 59.99730 * 10 8 6 12 12 H 1.48506 * 109.47329 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47021 * 299.99850 * 10 8 6 14 14 C 1.34777 * 119.99878 * 90.00202 * 4 3 2 15 15 O 1.21280 * 119.99588 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00162 * 359.97438 * 14 4 3 17 17 C 1.52995 * 109.47027 * 179.97438 * 16 14 4 18 18 C 1.50706 * 109.47238 * 180.02562 * 17 16 14 19 19 C 1.39864 * 125.89999 * 124.71358 * 18 17 16 20 20 C 1.35316 * 107.91828 * 179.86198 * 19 18 17 21 21 C 1.50704 * 126.12712 * 180.14439 * 20 19 18 22 22 N 1.34952 * 107.74600 * 0.40147 * 20 19 18 23 23 H 0.96998 * 126.03424 * 179.75239 * 22 20 19 24 24 N 1.30836 * 125.89591 * 305.02373 * 18 17 16 25 25 H 1.08004 * 119.99863 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00070 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99863 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46546 * 5.00139 * 3 2 1 29 29 H 1.09000 * 109.46952 * 245.00064 * 3 2 1 30 30 H 1.08998 * 109.47434 * 30.00090 * 5 4 3 31 31 H 1.09002 * 109.47360 * 150.00165 * 5 4 3 32 32 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47046 * 60.00284 * 16 14 4 34 34 H 1.08998 * 109.47040 * 300.00114 * 16 14 4 35 35 H 1.08997 * 109.47344 * 59.99930 * 17 16 14 36 36 H 1.08998 * 109.47310 * 299.99956 * 17 16 14 37 37 H 1.07995 * 126.04278 * 359.97438 * 19 18 17 38 38 H 1.09000 * 109.47258 * 270.27251 * 21 20 19 39 39 H 1.09004 * 109.46986 * 30.27360 * 21 20 19 40 40 H 1.09001 * 109.47136 * 150.26873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3035 3.8369 1.6365 8 6 2.5196 4.0664 3.6085 9 7 1.9610 3.4655 4.6364 10 14 2.8728 5.8994 3.6771 11 1 2.1362 6.5867 2.5862 12 1 2.4321 6.4398 4.9883 13 1 4.3306 6.1291 3.5113 14 6 4.2498 0.8659 0.9823 15 8 5.0200 0.8885 1.9188 16 6 4.6969 0.3171 -0.3480 17 6 6.1534 -0.1404 -0.2474 18 6 6.6008 -0.6887 -1.5780 19 6 7.7124 -0.2592 -2.3101 20 6 7.7762 -0.9979 -3.4420 21 6 8.8181 -0.8773 -4.5242 22 7 6.7364 -1.8581 -3.4309 23 1 6.5271 -2.5092 -4.1188 24 7 6.0131 -1.6448 -2.2504 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0990 1.3602 3.2259 32 1 1.7321 3.9742 5.4300 33 1 4.6121 1.0935 -1.1084 34 1 4.0677 -0.5298 -0.6216 35 1 6.2388 -0.9165 0.5131 36 1 6.7823 0.7068 0.0260 37 1 8.3996 0.5225 -2.0220 38 1 8.4875 -0.1520 -5.2676 39 1 9.7597 -0.5457 -4.0866 40 1 8.9606 -1.8471 -5.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556761181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = 45.226223 kcal Electronic energy + Delta-G solvation = -20884.071290 eV Core-core repulsion = 17700.706856 eV Total energy + Delta-G solvation = -3183.364434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31144 -39.03088 -35.64920 -34.20818 -33.10957 -32.02950 -31.91767 -30.33644 -27.66069 -27.13203 -25.54920 -24.70001 -22.28463 -20.65753 -19.91730 -19.47630 -18.22663 -17.44812 -16.46751 -16.16318 -15.53930 -15.15621 -14.90162 -14.44524 -14.14952 -13.94916 -13.71571 -13.37664 -13.11169 -13.03900 -12.63709 -12.50661 -12.14605 -11.82717 -11.65736 -11.56636 -11.22200 -11.10531 -10.89214 -10.85485 -10.53253 -10.42092 -10.13889 -9.59663 -9.33558 -9.10735 -8.78290 -8.68977 -8.37985 -7.60726 -5.98875 -4.03549 1.75833 2.52355 2.71509 2.76307 3.35324 3.39549 3.41991 3.53752 4.08520 4.45016 4.50665 4.66313 4.81395 5.13190 5.14142 5.24081 5.32765 5.35378 5.47414 5.48199 5.49048 5.62719 5.67555 5.78325 5.94289 5.99225 6.08341 6.25339 6.29703 6.31570 6.63507 6.86990 6.98729 7.16432 7.18540 7.52169 7.62841 7.65097 7.97871 8.29840 8.49764 8.96071 9.17426 9.61303 11.09190 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.003908 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.087418 B = 7163.576282 C = 8078.714149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.137 3.863 4 N -0.594 5.594 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.542 6.542 16 C -0.133 4.133 17 C -0.025 4.025 18 C 0.089 3.911 19 C -0.266 4.266 20 C 0.080 3.920 21 C -0.092 4.092 22 N -0.481 5.481 23 H 0.434 0.566 24 N -0.292 5.292 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -9.309 -18.985 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.185 4.185 3 C 0.013 3.987 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.293 3.707 15 O -0.420 6.420 16 C -0.174 4.174 17 C -0.065 4.065 18 C -0.077 4.077 19 C -0.296 4.296 20 C -0.049 4.049 21 C -0.150 4.150 22 N -0.189 5.189 23 H 0.278 0.722 24 N -0.116 5.116 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.165 0.835 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.758 -10.047 -18.280 21.926 hybrid contribution 0.573 1.195 -0.351 1.371 sum 7.331 -8.852 -18.631 21.891 Atomic orbital electron populations 1.23796 0.95858 1.01659 1.01031 1.23449 0.96375 0.99159 0.99479 1.20570 0.93108 0.95206 0.89850 1.48217 1.10595 1.60241 1.13491 1.19251 0.95336 0.93679 0.78933 1.21417 1.40458 0.93413 1.01185 0.92505 1.24932 0.95118 0.98702 0.95355 1.69927 1.42122 1.36216 1.05161 0.86571 0.78829 0.84991 0.77090 1.20300 1.21228 1.20155 1.20349 0.82293 0.78451 0.89646 1.90664 1.52557 1.56573 1.42185 1.21644 0.96816 1.02052 0.96846 1.19806 0.95572 1.01377 0.89697 1.22452 0.94081 0.94067 0.97130 1.21232 1.03937 1.07685 0.96713 1.21097 0.92090 0.93482 0.98232 1.20442 0.96200 1.02872 0.95493 1.46298 1.21656 1.31861 1.19087 0.72232 1.77320 1.18916 1.20499 0.94817 0.88353 0.88864 0.87727 0.89591 0.90758 0.95089 0.93893 0.92718 0.89563 0.89126 0.89382 0.89035 0.83484 0.90200 0.89566 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.02 0.42 -2.14 16 2 C -0.17 -2.50 9.74 -36.02 -0.35 -2.85 16 3 C 0.14 2.32 5.65 -5.19 -0.03 2.29 16 4 N -0.59 -12.89 2.44 -176.44 -0.43 -13.33 16 5 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 6 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 10 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.51 10.70 7.67 -10.99 -0.08 10.61 16 15 O -0.54 -13.70 15.56 5.56 0.09 -13.61 16 16 C -0.13 -2.10 4.21 -27.89 -0.12 -2.22 16 17 C -0.02 -0.37 5.08 -27.88 -0.14 -0.52 16 18 C 0.09 1.24 6.49 -82.41 -0.53 0.70 16 19 C -0.27 -3.14 10.64 -40.01 -0.43 -3.57 16 20 C 0.08 0.76 7.21 -82.26 -0.59 0.17 16 21 C -0.09 -0.49 10.43 36.01 0.38 -0.11 16 22 N -0.48 -4.92 7.36 33.48 0.25 -4.68 16 23 H 0.43 2.98 8.96 -182.62 -1.64 1.34 16 24 N -0.29 -4.03 12.67 33.67 0.43 -3.61 16 25 H 0.10 1.32 7.84 -52.48 -0.41 0.91 16 26 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.10 1.52 7.83 -52.48 -0.41 1.11 16 28 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 29 H 0.07 1.08 6.44 -51.93 -0.33 0.74 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 34 H 0.09 1.34 7.77 -51.93 -0.40 0.94 16 35 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 37 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -35.04 345.92 -7.96 -43.00 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.29 Total: 1.04 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.93 Total: -4.82 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.98 Total: -47.88 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.04 -7.96 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556761181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.226 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds