Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00550 * 2 1 4 4 N 1.46501 * 109.47242 * 125.00102 * 3 2 1 5 5 C 1.46496 * 119.99706 * 270.00114 * 4 3 2 6 6 C 1.50698 * 109.47380 * 269.99935 * 5 4 3 7 7 H 1.08003 * 120.00001 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00377 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00136 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00117 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47430 * 59.99730 * 10 8 6 12 12 H 1.48506 * 109.47329 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47021 * 299.99850 * 10 8 6 14 14 C 1.34777 * 119.99878 * 90.00202 * 4 3 2 15 15 O 1.21280 * 119.99588 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00162 * 359.97438 * 14 4 3 17 17 C 1.52995 * 109.47027 * 179.97438 * 16 14 4 18 18 C 1.50706 * 109.47238 * 180.02562 * 17 16 14 19 19 C 1.39864 * 125.89999 * 124.71358 * 18 17 16 20 20 C 1.35316 * 107.91828 * 179.86198 * 19 18 17 21 21 C 1.50704 * 126.12712 * 180.14439 * 20 19 18 22 22 N 1.34952 * 107.74600 * 0.40147 * 20 19 18 23 23 H 0.96998 * 126.03424 * 179.75239 * 22 20 19 24 24 N 1.30836 * 125.89591 * 305.02373 * 18 17 16 25 25 H 1.08004 * 119.99863 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00070 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99863 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46546 * 5.00139 * 3 2 1 29 29 H 1.09000 * 109.46952 * 245.00064 * 3 2 1 30 30 H 1.08998 * 109.47434 * 30.00090 * 5 4 3 31 31 H 1.09002 * 109.47360 * 150.00165 * 5 4 3 32 32 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47046 * 60.00284 * 16 14 4 34 34 H 1.08998 * 109.47040 * 300.00114 * 16 14 4 35 35 H 1.08997 * 109.47344 * 59.99930 * 17 16 14 36 36 H 1.08998 * 109.47310 * 299.99956 * 17 16 14 37 37 H 1.07995 * 126.04278 * 359.97438 * 19 18 17 38 38 H 1.09000 * 109.47258 * 270.27251 * 21 20 19 39 39 H 1.09004 * 109.46986 * 30.27360 * 21 20 19 40 40 H 1.09001 * 109.47136 * 150.26873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3035 3.8369 1.6365 8 6 2.5196 4.0664 3.6085 9 7 1.9610 3.4655 4.6364 10 14 2.8728 5.8994 3.6771 11 1 2.1362 6.5867 2.5862 12 1 2.4321 6.4398 4.9883 13 1 4.3306 6.1291 3.5113 14 6 4.2498 0.8659 0.9823 15 8 5.0200 0.8885 1.9188 16 6 4.6969 0.3171 -0.3480 17 6 6.1534 -0.1404 -0.2474 18 6 6.6008 -0.6887 -1.5780 19 6 7.7124 -0.2592 -2.3101 20 6 7.7762 -0.9979 -3.4420 21 6 8.8181 -0.8773 -4.5242 22 7 6.7364 -1.8581 -3.4309 23 1 6.5271 -2.5092 -4.1188 24 7 6.0131 -1.6448 -2.2504 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0990 1.3602 3.2259 32 1 1.7321 3.9742 5.4300 33 1 4.6121 1.0935 -1.1084 34 1 4.0677 -0.5298 -0.6216 35 1 6.2388 -0.9165 0.5131 36 1 6.7823 0.7068 0.0260 37 1 8.3996 0.5225 -2.0220 38 1 8.4875 -0.1520 -5.2676 39 1 9.7597 -0.5457 -4.0866 40 1 8.9606 -1.8471 -5.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556761181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = 22.305548 kcal Electronic energy + Delta-G solvation = -20885.065205 eV Core-core repulsion = 17700.706856 eV Total energy + Delta-G solvation = -3184.358349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18871 -40.72511 -37.25966 -35.45464 -34.95096 -33.65434 -32.75790 -31.46213 -29.55236 -27.80620 -26.96241 -26.34104 -24.13933 -21.48802 -21.17814 -20.52500 -19.81603 -18.61661 -18.28043 -17.74266 -17.24676 -16.57768 -16.21205 -15.86038 -15.63668 -15.03712 -14.63794 -14.56318 -14.32219 -14.12849 -14.01992 -13.53445 -13.50003 -13.33844 -12.98055 -12.92815 -12.81983 -12.75632 -12.53409 -12.30989 -12.19082 -12.11719 -11.67586 -11.42843 -10.62782 -10.62261 -10.31888 -10.18604 -9.52632 -9.44835 -8.20245 -6.35396 0.92547 1.32732 1.38191 1.42740 1.50052 1.76445 1.85346 2.00857 2.36731 2.54148 3.09141 3.55345 3.78971 3.88260 4.06826 4.10861 4.21167 4.24522 4.35290 4.44699 4.63933 4.69342 4.79411 4.83189 4.87338 4.99541 5.03472 5.06422 5.12036 5.15678 5.25034 5.29886 5.54046 5.68655 5.71323 5.77453 5.96643 6.08541 6.49576 6.70847 6.75734 6.79649 7.29713 7.49062 8.86936 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.003908 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.087418 B = 7163.576282 C = 8078.714149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.184 4.184 3 C 0.134 3.866 4 N -0.600 5.600 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.498 3.502 15 O -0.593 6.593 16 C -0.112 4.112 17 C -0.019 4.019 18 C 0.075 3.925 19 C -0.294 4.294 20 C 0.097 3.903 21 C -0.089 4.089 22 N -0.470 5.470 23 H 0.449 0.551 24 N -0.324 5.324 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.019 0.981 31 H -0.004 1.004 32 H 0.267 0.733 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 -9.005 -21.946 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C 0.012 3.988 4 N -0.330 5.330 5 C 0.143 3.857 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.201 1.201 14 C 0.288 3.712 15 O -0.474 6.474 16 C -0.152 4.152 17 C -0.058 4.058 18 C -0.091 4.091 19 C -0.323 4.323 20 C -0.032 4.032 21 C -0.148 4.148 22 N -0.181 5.181 23 H 0.295 0.705 24 N -0.148 5.148 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.037 0.963 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.125 -9.768 -21.298 24.491 hybrid contribution 0.430 1.018 0.520 1.221 sum 7.555 -8.750 -20.779 23.778 Atomic orbital electron populations 1.24038 0.95461 1.02874 0.98430 1.23337 0.96862 0.98328 1.01784 1.20797 0.92686 0.96197 0.89086 1.48222 1.11825 1.59856 1.13050 1.18684 0.93737 0.92795 0.80498 1.21700 1.40673 0.94395 1.01481 0.92654 1.25883 0.94617 1.03902 0.94795 1.70056 1.42841 1.38250 1.05775 0.85453 0.78603 0.78815 0.77853 1.18435 1.20392 1.20131 1.21293 0.81456 0.77457 0.91044 1.90630 1.53902 1.58562 1.44355 1.21531 0.97433 1.02709 0.93514 1.19627 0.94922 1.00711 0.90589 1.22229 0.95279 0.94851 0.96724 1.21474 1.04063 1.09066 0.97666 1.21686 0.91817 0.91536 0.98206 1.20612 0.95087 1.04596 0.94456 1.46329 1.21334 1.32033 1.18404 0.70463 1.77217 1.20296 1.20957 0.96322 0.88180 0.86599 0.87100 0.90401 0.87854 0.96285 0.98571 0.92420 0.87549 0.87607 0.90998 0.89704 0.82595 0.88705 0.88565 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 14.32 67.78 0.97 -3.42 16 2 C -0.18 -5.37 9.74 25.65 0.25 -5.12 16 3 C 0.13 4.50 5.65 85.63 0.48 4.98 16 4 N -0.60 -26.67 2.44 -830.52 -2.03 -28.70 16 5 C 0.26 14.79 5.16 85.63 0.44 15.23 16 6 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 7 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 8 C 0.01 0.40 5.46 84.65 0.46 0.87 16 9 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 10 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.50 21.70 7.67 87.66 0.67 22.37 16 15 O -0.59 -31.59 15.56 -3.03 -0.05 -31.64 16 16 C -0.11 -3.50 4.21 29.85 0.13 -3.37 16 17 C -0.02 -0.57 5.08 29.85 0.15 -0.42 16 18 C 0.07 2.02 6.49 43.10 0.28 2.30 16 19 C -0.29 -6.53 10.64 21.99 0.23 -6.30 16 20 C 0.10 1.62 7.21 41.41 0.30 1.92 16 21 C -0.09 -0.63 10.43 71.24 0.74 0.12 16 22 N -0.47 -8.59 7.36 -48.00 -0.35 -8.94 16 23 H 0.45 4.98 8.96 -213.34 -1.91 3.07 16 24 N -0.32 -8.55 12.67 -47.38 -0.60 -9.15 16 25 H 0.10 2.54 7.84 -2.91 -0.02 2.52 16 26 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 27 H 0.11 3.10 7.83 -2.91 -0.02 3.08 16 28 H 0.08 2.71 7.72 -2.39 -0.02 2.70 16 29 H 0.10 2.81 6.44 -2.39 -0.02 2.80 16 30 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 31 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 34 H 0.11 3.03 7.77 -2.39 -0.02 3.01 16 35 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 36 H 0.08 2.65 8.08 -2.39 -0.02 2.64 16 37 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -78.83 345.92 3.76 -75.07 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.88 Total: 15.63 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.35 Total: -2.69 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -2.69 Total: -103.91 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.05 Total: -31.64 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.83 3.76 -75.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556761181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.380 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds