Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38671 * 120.79141 * 2 1 4 4 C 1.38181 * 119.16252 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76882 * 359.97438 * 4 3 2 6 6 C 1.31856 * 121.72177 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61470 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47064 * 274.99797 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46736 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47013 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46986 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00338 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00592 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99866 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47299 * 90.00278 * 19 17 15 21 21 H 1.48504 * 109.46932 * 209.99995 * 19 17 15 22 22 H 1.48497 * 109.47179 * 329.99791 * 19 17 15 23 23 C 1.38225 * 120.76666 * 0.27564 * 6 5 4 24 24 H 1.09002 * 109.47019 * 90.00467 * 1 2 3 25 25 H 1.09001 * 109.47225 * 209.99983 * 1 2 3 26 26 H 1.09000 * 109.47280 * 330.00196 * 1 2 3 27 27 H 1.07998 * 120.41376 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.61087 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47152 * 154.99880 * 7 6 5 30 30 H 1.09001 * 109.46980 * 34.99980 * 7 6 5 31 31 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 32 32 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 34 34 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 35 35 H 1.08994 * 109.47144 * 299.99776 * 13 12 11 36 36 H 1.09004 * 109.46808 * 60.00030 * 13 12 11 37 37 H 1.09003 * 109.47122 * 300.00157 * 14 13 12 38 38 H 1.08994 * 109.47425 * 59.99911 * 14 13 12 39 39 H 0.96992 * 120.00638 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.42009 * 179.70551 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0000 0.0016 6 6 3.5983 -1.1517 0.0016 7 6 4.3800 -2.4401 0.0034 8 7 4.7378 -2.7961 -1.3720 9 6 5.4442 -3.9177 -1.6156 10 8 5.7842 -4.6343 -0.6942 11 7 5.7738 -4.2449 -2.8809 12 6 6.5412 -5.4644 -3.1458 13 6 6.7789 -5.6005 -4.6512 14 6 7.5809 -6.8737 -4.9278 15 6 7.8155 -7.0073 -6.4105 16 1 7.4314 -6.2588 -7.0876 17 6 8.5205 -8.0852 -6.9024 18 7 8.7249 -8.2022 -8.1963 19 14 9.1854 -9.3796 -5.7311 20 1 8.1695 -10.4464 -5.5436 21 1 10.4245 -9.9703 -6.2979 22 1 9.4911 -8.7513 -4.4208 23 6 2.2166 -1.1909 -0.0052 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6967 2.1377 -0.0004 28 1 4.1583 2.0754 0.0001 29 1 3.7717 -3.2336 0.4375 30 1 5.2875 -2.3136 0.5938 31 1 4.4669 -2.2241 -2.1071 32 1 5.5029 -3.6730 -3.6161 33 1 7.4997 -5.4098 -2.6298 34 1 5.9840 -6.3296 -2.7868 35 1 5.8202 -5.6552 -5.1669 36 1 7.3360 -4.7352 -5.0106 37 1 8.5396 -6.8185 -4.4121 38 1 7.0243 -7.7391 -4.5682 39 1 9.2211 -8.9603 -8.5424 40 1 1.6965 -2.1374 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563975819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -13.767305 kcal Electronic energy + Delta-G solvation = -19861.145050 eV Core-core repulsion = 16675.222464 eV Total energy + Delta-G solvation = -3185.922586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82463 -39.69662 -35.87711 -35.00677 -34.19284 -33.28431 -31.98092 -31.13060 -28.36144 -27.62437 -26.17770 -23.56906 -22.79545 -21.43335 -20.89740 -20.26393 -18.24521 -17.08730 -16.95025 -16.60709 -16.21676 -15.59556 -15.54954 -14.81107 -14.37509 -14.32565 -14.22393 -13.83293 -13.49853 -13.25337 -13.18313 -12.96302 -12.78933 -12.66788 -11.94144 -11.87899 -11.83816 -11.03508 -10.86587 -10.31013 -10.00638 -9.93965 -9.88682 -9.81019 -9.68413 -9.47348 -9.25022 -9.20325 -8.64731 -8.53376 -6.04286 -4.02857 0.57573 0.79918 2.75459 3.33467 3.33867 3.40835 3.42098 3.45911 3.81423 4.12592 4.24953 4.40830 4.46662 4.59553 4.66912 4.85710 5.01912 5.06202 5.18540 5.29938 5.30921 5.39760 5.52714 5.60559 5.69281 5.73423 5.83070 6.07447 6.24150 6.34814 6.41417 6.50553 6.72385 6.85579 7.00903 7.26529 7.39832 7.57195 7.78072 8.10845 8.52378 8.71149 8.99629 9.58071 11.08942 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.002360 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.803190 B =11859.538963 C =12049.118751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 C -0.171 4.171 4 C 0.103 3.897 5 N -0.472 5.472 6 C 0.113 3.887 7 C 0.193 3.807 8 N -0.744 5.744 9 C 0.703 3.297 10 O -0.593 6.593 11 N -0.741 5.741 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.154 4.154 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.396 0.604 32 H 0.395 0.605 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.216 19.983 17.557 31.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.191 4.191 4 C -0.054 4.054 5 N -0.182 5.182 6 C -0.025 4.025 7 C 0.068 3.932 8 N -0.401 5.401 9 C 0.403 3.597 10 O -0.471 6.471 11 N -0.395 5.395 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.559 4.559 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.188 1.188 23 C -0.175 4.175 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.175 0.825 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.229 0.771 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.880 19.155 18.292 30.882 hybrid contribution -0.807 -0.051 -0.269 0.852 sum -16.687 19.104 18.023 31.117 Atomic orbital electron populations 1.20853 0.89994 1.03503 1.03134 1.20390 0.96981 0.92897 0.94898 1.22116 0.95734 0.98778 1.02457 1.22799 0.91761 0.96083 0.94773 1.67535 1.41302 0.98029 1.11361 1.21240 0.91084 0.93657 0.96472 1.19869 0.99079 0.90528 0.83717 1.44971 1.60571 1.26047 1.08509 1.15930 0.78825 0.81094 0.83845 1.90920 1.59908 1.52861 1.43443 1.45317 1.59876 1.28265 1.06040 1.21520 0.94913 0.84633 0.97963 1.21707 1.01055 1.00947 0.91387 1.19504 0.95117 0.92429 0.97874 1.21100 1.35012 1.09225 0.90580 0.91033 1.25033 0.95621 0.97900 0.94988 1.69908 1.41449 1.30774 1.12136 0.86772 0.78666 0.82007 0.81841 1.20253 1.21400 1.18834 1.21955 0.94623 0.99123 1.01784 0.90291 0.90816 0.90915 0.84673 0.82464 0.89988 0.89797 0.77112 0.77150 0.91917 0.91948 0.92178 0.92128 0.96250 0.96700 0.92720 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.06 36.01 0.36 -0.10 16 2 C -0.04 -0.28 5.92 -104.32 -0.62 -0.89 16 3 C -0.17 -1.03 9.82 -39.44 -0.39 -1.42 16 4 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 5 N -0.47 -4.76 10.27 -9.47 -0.10 -4.86 16 6 C 0.11 1.06 6.15 -82.59 -0.51 0.55 16 7 C 0.19 2.05 5.98 -5.19 -0.03 2.02 16 8 N -0.74 -8.52 5.55 -66.41 -0.37 -8.88 16 9 C 0.70 10.74 8.57 -86.92 -0.74 10.00 16 10 O -0.59 -11.47 16.34 5.29 0.09 -11.38 16 11 N -0.74 -10.65 5.56 -65.22 -0.36 -11.01 16 12 C 0.13 2.28 5.67 -4.04 -0.02 2.25 16 13 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 19 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 C -0.15 -1.16 9.43 -39.44 -0.37 -1.53 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 26 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 27 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 28 H 0.16 0.80 8.06 -52.48 -0.42 0.37 16 29 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.40 3.71 8.48 -40.82 -0.35 3.36 16 32 H 0.40 4.59 8.49 -40.82 -0.35 4.25 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 38 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -34.92 342.43 -8.79 -43.70 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.11 Total: 1.68 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.20 Total: -4.50 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.06 Total: -51.92 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.92 -8.79 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563975819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.937 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds