Wall clock time and date at job start Mon Mar 30 2020 01:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38671 * 120.79141 * 2 1 4 4 C 1.38181 * 119.16252 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76882 * 359.97438 * 4 3 2 6 6 C 1.31856 * 121.72177 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61470 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47064 * 274.99797 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46736 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47013 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46986 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00338 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00592 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99866 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47299 * 90.00278 * 19 17 15 21 21 H 1.48504 * 109.46932 * 209.99995 * 19 17 15 22 22 H 1.48497 * 109.47179 * 329.99791 * 19 17 15 23 23 C 1.38225 * 120.76666 * 0.27564 * 6 5 4 24 24 H 1.09002 * 109.47019 * 90.00467 * 1 2 3 25 25 H 1.09001 * 109.47225 * 209.99983 * 1 2 3 26 26 H 1.09000 * 109.47280 * 330.00196 * 1 2 3 27 27 H 1.07998 * 120.41376 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.61087 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47152 * 154.99880 * 7 6 5 30 30 H 1.09001 * 109.46980 * 34.99980 * 7 6 5 31 31 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 32 32 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 34 34 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 35 35 H 1.08994 * 109.47144 * 299.99776 * 13 12 11 36 36 H 1.09004 * 109.46808 * 60.00030 * 13 12 11 37 37 H 1.09003 * 109.47122 * 300.00157 * 14 13 12 38 38 H 1.08994 * 109.47425 * 59.99911 * 14 13 12 39 39 H 0.96992 * 120.00638 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.42009 * 179.70551 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0000 0.0016 6 6 3.5983 -1.1517 0.0016 7 6 4.3800 -2.4401 0.0034 8 7 4.7378 -2.7961 -1.3720 9 6 5.4442 -3.9177 -1.6156 10 8 5.7842 -4.6343 -0.6942 11 7 5.7738 -4.2449 -2.8809 12 6 6.5412 -5.4644 -3.1458 13 6 6.7789 -5.6005 -4.6512 14 6 7.5809 -6.8737 -4.9278 15 6 7.8155 -7.0073 -6.4105 16 1 7.4314 -6.2588 -7.0876 17 6 8.5205 -8.0852 -6.9024 18 7 8.7249 -8.2022 -8.1963 19 14 9.1854 -9.3796 -5.7311 20 1 8.1695 -10.4464 -5.5436 21 1 10.4245 -9.9703 -6.2979 22 1 9.4911 -8.7513 -4.4208 23 6 2.2166 -1.1909 -0.0052 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6967 2.1377 -0.0004 28 1 4.1583 2.0754 0.0001 29 1 3.7717 -3.2336 0.4375 30 1 5.2875 -2.3136 0.5938 31 1 4.4669 -2.2241 -2.1071 32 1 5.5029 -3.6730 -3.6161 33 1 7.4997 -5.4098 -2.6298 34 1 5.9840 -6.3296 -2.7868 35 1 5.8202 -5.6552 -5.1669 36 1 7.3360 -4.7352 -5.0106 37 1 8.5396 -6.8185 -4.4121 38 1 7.0243 -7.7391 -4.5682 39 1 9.2211 -8.9603 -8.5424 40 1 1.6965 -2.1374 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563975819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:11 Heat of formation + Delta-G solvation = -38.915286 kcal Electronic energy + Delta-G solvation = -19862.235548 eV Core-core repulsion = 16675.222464 eV Total energy + Delta-G solvation = -3187.013084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49046 -40.80556 -37.19352 -36.10000 -35.14111 -34.77261 -33.38981 -32.31719 -29.16224 -28.72406 -27.30260 -24.55845 -24.03461 -22.26064 -22.06994 -21.81221 -19.42839 -18.90408 -17.68706 -17.58150 -17.02961 -16.82015 -16.36223 -16.20110 -15.74339 -15.54574 -15.22431 -14.90357 -14.72879 -14.23087 -14.04528 -13.78221 -13.67608 -13.58112 -13.39954 -13.29613 -12.71721 -12.67703 -12.34022 -11.93097 -11.77584 -11.58129 -11.38822 -11.31105 -10.75098 -10.49258 -10.43111 -10.40560 -10.08143 -9.80048 -8.28409 -6.32178 0.00561 0.28107 1.37990 1.39755 1.51844 1.71788 2.12173 2.37534 2.78473 3.07313 3.16718 3.37713 3.61782 3.84324 4.10802 4.11807 4.16749 4.23808 4.38044 4.49518 4.52881 4.62660 4.70481 4.79959 4.86608 4.91976 4.92637 5.03894 5.05481 5.22560 5.35130 5.37726 5.42605 5.53103 5.57847 5.66146 5.75242 5.94827 6.28602 6.75719 6.99652 7.04458 7.32565 7.53436 8.87948 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.002360 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.803190 B =11859.538963 C =12049.118751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.164 4.164 4 C 0.090 3.910 5 N -0.506 5.506 6 C 0.098 3.902 7 C 0.196 3.804 8 N -0.727 5.727 9 C 0.702 3.298 10 O -0.635 6.635 11 N -0.732 5.732 12 C 0.147 3.853 13 C -0.099 4.099 14 C -0.012 4.012 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.003 3.997 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.248 1.248 23 C -0.157 4.157 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.177 0.823 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.408 0.592 32 H 0.410 0.590 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.266 0.734 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.714 20.975 19.004 33.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.056 4.056 3 C -0.184 4.184 4 C -0.067 4.067 5 N -0.216 5.216 6 C -0.039 4.039 7 C 0.071 3.929 8 N -0.383 5.383 9 C 0.402 3.598 10 O -0.517 6.517 11 N -0.387 5.387 12 C 0.022 3.978 13 C -0.137 4.137 14 C -0.050 4.050 15 C -0.568 4.568 16 H 0.056 0.944 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.171 1.171 23 C -0.178 4.178 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.182 0.818 28 H 0.194 0.806 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.243 0.757 32 H 0.246 0.754 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.415 20.204 19.726 33.176 hybrid contribution -0.417 -0.215 -0.763 0.896 sum -17.833 19.989 18.963 32.820 Atomic orbital electron populations 1.20910 0.88046 1.04482 1.03847 1.20749 0.98393 0.92514 0.93897 1.22451 0.95241 0.99984 1.00685 1.23206 0.92855 0.95957 0.94665 1.67455 1.42582 0.98930 1.12640 1.21013 0.91659 0.92864 0.98414 1.19849 0.98544 0.91783 0.82720 1.44832 1.59151 1.24810 1.09512 1.16043 0.78881 0.81559 0.83359 1.90891 1.61648 1.54457 1.44687 1.45047 1.59459 1.27740 1.06480 1.21165 0.94854 0.85626 0.96148 1.21474 1.00595 0.98809 0.92824 1.19469 0.96054 0.94989 0.94537 1.21462 1.34317 1.08244 0.92752 0.94431 1.25993 0.96140 1.00529 0.96675 1.70053 1.42825 1.31941 1.14311 0.85693 0.78124 0.79106 0.79964 1.19159 1.21065 1.17147 1.22097 0.93912 1.00331 1.01423 0.89561 0.90352 0.89509 0.81829 0.80612 0.89549 0.91740 0.75695 0.75386 0.92775 0.92391 0.91618 0.91862 0.96093 0.96046 0.92524 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.06 71.24 0.72 0.15 16 2 C -0.05 -0.49 5.92 -19.67 -0.12 -0.61 16 3 C -0.16 -1.57 9.82 22.36 0.22 -1.35 16 4 C 0.09 1.22 11.18 84.67 0.95 2.16 16 5 N -0.51 -9.88 10.27 -183.88 -1.89 -11.77 16 6 C 0.10 1.76 6.15 42.55 0.26 2.02 16 7 C 0.20 4.14 5.98 85.63 0.51 4.65 16 8 N -0.73 -16.10 5.55 -482.29 -2.68 -18.78 16 9 C 0.70 20.93 8.57 179.05 1.53 22.47 16 10 O -0.64 -24.49 16.34 -3.98 -0.07 -24.56 16 11 N -0.73 -20.09 5.56 -478.53 -2.66 -22.75 16 12 C 0.15 4.83 5.67 86.38 0.49 5.32 16 13 C -0.10 -3.64 5.27 30.60 0.16 -3.48 16 14 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 15 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 16 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 17 C 0.00 0.20 5.47 84.65 0.46 0.66 16 18 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 19 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 23 C -0.16 -2.13 9.43 22.36 0.21 -1.91 16 24 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.08 0.33 8.10 -2.39 -0.02 0.31 16 26 H 0.09 0.20 8.10 -2.39 -0.02 0.18 16 27 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 28 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.09 1.73 8.04 -2.39 -0.02 1.71 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.41 7.14 8.48 -92.71 -0.79 6.35 16 32 H 0.41 8.80 8.49 -92.71 -0.79 8.02 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -75.96 342.43 0.08 -75.89 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.58 Total: 15.19 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.77 Total: -0.45 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -6.93 Total: -112.77 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -75.96 0.08 -75.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563975819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.974 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds