Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38230 * 120.41786 * 2 1 4 4 N 1.31856 * 120.76135 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72645 * 359.70775 * 4 3 2 6 6 C 1.38182 * 120.76389 * 0.57685 * 5 4 3 7 7 C 1.50696 * 120.41995 * 179.70618 * 6 5 4 8 8 C 1.50704 * 109.47323 * 269.72670 * 7 6 5 9 9 O 1.21287 * 119.99416 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00338 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.38629 * 120.41868 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47362 * 269.98065 * 1 2 3 26 26 H 1.09002 * 109.46955 * 29.98279 * 1 2 3 27 27 H 1.08997 * 109.46961 * 149.97784 * 1 2 3 28 28 H 1.07994 * 119.62008 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.61712 * 180.30801 * 5 4 3 30 30 H 1.09005 * 109.47341 * 149.72770 * 7 6 5 31 31 H 1.09002 * 109.47312 * 29.72628 * 7 6 5 32 32 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 34 34 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 35 35 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 36 36 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 37 37 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 38 38 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 39 39 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.79251 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 0.0047 6 6 3.5948 -1.1471 -0.0010 7 6 4.4026 -2.4192 -0.0017 8 6 4.6714 -2.8430 -1.4228 9 8 4.2489 -2.1771 -2.3442 10 7 5.3820 -3.9612 -1.6696 11 6 5.6437 -4.3728 -3.0510 12 6 6.4637 -5.6644 -3.0517 13 1 5.8723 -6.4706 -2.6177 14 6 6.8433 -6.0269 -4.4889 15 7 7.6808 -5.4706 -2.2594 16 6 8.3022 -6.5470 -1.6847 17 1 7.8955 -7.5388 -1.8158 18 6 9.4586 -6.3640 -0.9388 19 7 9.9545 -5.1553 -0.7795 20 14 10.3107 -7.8332 -0.1612 21 1 10.7160 -8.7893 -1.2227 22 1 11.5140 -7.3737 0.5775 23 1 9.3789 -8.5047 0.7802 24 6 2.2089 -1.1955 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6675 2.1276 -0.0004 29 1 5.3047 0.1285 0.0091 30 1 3.8463 -3.2032 0.5122 31 1 5.3490 -2.2490 0.5118 32 1 5.7208 -4.4931 -0.9327 33 1 6.1999 -3.5886 -3.5647 34 1 4.6976 -4.5433 -3.5648 35 1 7.4271 -6.9473 -4.4894 36 1 5.9377 -6.1711 -5.0783 37 1 7.4347 -5.2208 -4.9229 38 1 8.0463 -4.5798 -2.1421 39 1 10.7624 -5.0274 -0.2580 40 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567039561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = -6.630465 kcal Electronic energy + Delta-G solvation = -20747.418037 eV Core-core repulsion = 17561.804928 eV Total energy + Delta-G solvation = -3185.613109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48261 -39.14899 -36.36592 -33.69253 -33.55479 -33.54486 -31.87108 -28.95372 -28.26141 -27.40142 -25.50005 -23.70283 -23.20999 -21.62196 -20.23695 -19.77028 -17.48455 -17.02990 -16.74213 -16.64178 -15.85634 -15.23280 -14.62657 -14.38140 -14.32135 -13.89077 -13.62310 -13.29440 -13.10387 -13.02602 -12.75128 -12.68441 -12.49480 -12.21460 -12.12288 -11.79797 -11.48563 -11.37414 -10.89617 -10.79250 -10.40767 -10.07368 -9.85479 -9.75542 -9.51066 -9.46148 -9.02646 -8.82204 -8.65376 -7.08881 -5.85590 -3.16087 1.04829 1.24863 2.90618 3.37370 3.42861 3.43808 3.47738 3.87421 4.35336 4.50883 4.61664 4.63895 4.89695 4.93280 5.01494 5.15945 5.25646 5.34721 5.43375 5.45263 5.47900 5.54494 5.57502 5.73783 5.83781 5.91127 6.05599 6.11986 6.15362 6.20425 6.29644 6.52903 6.67050 6.71735 6.81164 7.01102 7.61284 7.90380 7.95252 8.31863 8.54230 9.43751 9.98402 10.34237 11.36195 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.003431 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.598227 B = 8158.088419 C = 8735.717686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.141 4.141 3 C 0.091 3.909 4 N -0.481 5.481 5 C 0.107 3.893 6 C -0.103 4.103 7 C -0.102 4.102 8 C 0.512 3.488 9 O -0.549 6.549 10 N -0.712 5.712 11 C 0.115 3.885 12 C 0.160 3.840 13 H 0.053 0.947 14 C -0.163 4.163 15 N -0.724 5.724 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.065 4.065 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.049 0.951 38 H 0.385 0.615 39 H 0.257 0.743 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 6.734 2.584 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.066 4.066 4 N -0.188 5.188 5 C -0.050 4.050 6 C -0.106 4.106 7 C -0.142 4.142 8 C 0.297 3.703 9 O -0.427 6.427 10 N -0.363 5.363 11 C -0.009 4.009 12 C 0.049 3.951 13 H 0.071 0.929 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.091 4.091 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.247 0.753 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.565 7.846 1.988 18.437 hybrid contribution 0.572 -1.684 0.698 1.911 sum -15.993 6.162 2.686 17.348 Atomic orbital electron populations 1.20697 0.90345 1.03097 1.02369 1.20871 0.97443 0.94136 1.01790 1.22611 0.90062 0.97298 0.96642 1.67672 1.08298 1.31145 1.11731 1.22627 1.00318 0.87072 0.94990 1.20325 0.94208 0.95609 1.00413 1.20623 1.02075 0.95747 0.95802 1.20362 0.78376 0.80823 0.90737 1.90696 1.52010 1.53742 1.46287 1.45981 1.54169 1.26151 1.10027 1.21681 0.99119 0.97763 0.82346 1.20507 0.88900 0.93655 0.91997 0.92896 1.22365 0.99991 1.02040 0.97956 1.42470 1.26699 1.07988 1.59479 1.19174 1.05475 0.88180 1.24733 0.91185 1.24746 0.98326 0.96465 1.01081 1.69651 1.23615 1.19738 1.44762 0.86286 0.79026 0.81904 0.79032 1.21304 1.21718 1.21244 1.21315 0.93312 0.98194 0.96262 0.91046 0.91253 0.91375 0.83134 0.82846 0.87825 0.87184 0.75259 0.91871 0.91952 0.92321 0.94222 0.93198 0.78067 0.93361 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.04 36.01 0.36 -0.43 16 2 C -0.14 -1.51 5.90 -104.48 -0.62 -2.12 16 3 C 0.09 1.07 10.86 -17.54 -0.19 0.88 16 4 N -0.48 -6.80 10.36 -13.25 -0.14 -6.93 16 5 C 0.11 1.47 10.86 -17.55 -0.19 1.28 16 6 C -0.10 -1.32 4.39 -104.48 -0.46 -1.78 16 7 C -0.10 -1.21 5.86 -29.03 -0.17 -1.38 16 8 C 0.51 8.00 7.82 -10.99 -0.09 7.91 16 9 O -0.55 -10.51 16.03 5.55 0.09 -10.42 16 10 N -0.71 -11.26 5.39 -60.29 -0.32 -11.59 16 11 C 0.12 1.93 5.23 -4.04 -0.02 1.91 16 12 C 0.16 2.92 3.05 -67.93 -0.21 2.72 16 13 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 14 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 15 N -0.72 -16.60 4.56 -53.42 -0.24 -16.84 16 16 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 20 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.06 -0.75 9.55 -39.27 -0.37 -1.13 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.11 1.19 8.09 -51.93 -0.42 0.76 16 32 H 0.41 6.48 8.14 -40.82 -0.33 6.14 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 9.61 7.80 -40.82 -0.32 9.29 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -31.68 344.31 -7.68 -39.36 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.10 Total: 12.24 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.85 Total: -1.39 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.02 Total: -61.31 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.68 -7.68 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567039561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.728 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds