Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38230 * 120.41786 * 2 1 4 4 N 1.31856 * 120.76135 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72645 * 359.70775 * 4 3 2 6 6 C 1.38182 * 120.76389 * 0.57685 * 5 4 3 7 7 C 1.50696 * 120.41995 * 179.70618 * 6 5 4 8 8 C 1.50704 * 109.47323 * 269.72670 * 7 6 5 9 9 O 1.21287 * 119.99416 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00338 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.38629 * 120.41868 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47362 * 269.98065 * 1 2 3 26 26 H 1.09002 * 109.46955 * 29.98279 * 1 2 3 27 27 H 1.08997 * 109.46961 * 149.97784 * 1 2 3 28 28 H 1.07994 * 119.62008 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.61712 * 180.30801 * 5 4 3 30 30 H 1.09005 * 109.47341 * 149.72770 * 7 6 5 31 31 H 1.09002 * 109.47312 * 29.72628 * 7 6 5 32 32 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 33 33 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 34 34 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 35 35 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 36 36 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 37 37 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 38 38 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 39 39 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.79251 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 0.0047 6 6 3.5948 -1.1471 -0.0010 7 6 4.4026 -2.4192 -0.0017 8 6 4.6714 -2.8430 -1.4228 9 8 4.2489 -2.1771 -2.3442 10 7 5.3820 -3.9612 -1.6696 11 6 5.6437 -4.3728 -3.0510 12 6 6.4637 -5.6644 -3.0517 13 1 5.8723 -6.4706 -2.6177 14 6 6.8433 -6.0269 -4.4889 15 7 7.6808 -5.4706 -2.2594 16 6 8.3022 -6.5470 -1.6847 17 1 7.8955 -7.5388 -1.8158 18 6 9.4586 -6.3640 -0.9388 19 7 9.9545 -5.1553 -0.7795 20 14 10.3107 -7.8332 -0.1612 21 1 10.7160 -8.7893 -1.2227 22 1 11.5140 -7.3737 0.5775 23 1 9.3789 -8.5047 0.7802 24 6 2.2089 -1.1955 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6675 2.1276 -0.0004 29 1 5.3047 0.1285 0.0091 30 1 3.8463 -3.2032 0.5122 31 1 5.3490 -2.2490 0.5118 32 1 5.7208 -4.4931 -0.9327 33 1 6.1999 -3.5886 -3.5647 34 1 4.6976 -4.5433 -3.5648 35 1 7.4271 -6.9473 -4.4894 36 1 5.9377 -6.1711 -5.0783 37 1 7.4347 -5.2208 -4.9229 38 1 8.0463 -4.5798 -2.1421 39 1 10.7624 -5.0274 -0.2580 40 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567039561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = -27.805093 kcal Electronic energy + Delta-G solvation = -20748.336238 eV Core-core repulsion = 17561.804928 eV Total energy + Delta-G solvation = -3186.531310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45883 -40.36840 -37.91371 -35.16165 -34.57341 -34.48065 -33.56350 -30.64250 -29.37676 -28.14724 -26.81826 -25.58060 -24.15385 -22.58736 -21.71234 -21.00078 -19.33208 -18.03309 -17.83648 -17.67047 -17.19979 -16.77574 -16.15293 -15.49125 -15.43303 -15.25975 -14.98944 -14.48355 -14.16901 -13.96514 -13.91659 -13.66226 -13.58498 -13.49835 -13.24795 -13.06040 -12.97138 -12.73086 -12.48840 -12.30849 -12.21823 -11.69881 -11.64408 -11.07638 -10.93291 -10.49092 -10.40774 -9.99300 -9.72496 -9.01284 -7.90033 -5.19072 0.13634 0.34409 1.51821 1.53091 1.59027 1.67585 2.31565 2.59294 2.88820 3.44189 3.47505 3.72012 3.84350 3.88996 3.97610 4.05623 4.07649 4.09391 4.27482 4.41203 4.46219 4.63738 4.64928 4.73757 4.78962 4.85363 4.87587 4.93831 5.06452 5.20399 5.26339 5.27614 5.33961 5.43180 5.57827 5.61581 5.80859 6.30394 6.63541 7.02216 7.28837 7.38101 8.10342 8.35051 9.32359 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.003431 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.598227 B = 8158.088419 C = 8735.717686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C 0.078 3.922 4 N -0.509 5.509 5 C 0.081 3.919 6 C -0.114 4.114 7 C -0.093 4.093 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.711 5.711 11 C 0.124 3.876 12 C 0.160 3.840 13 H 0.062 0.938 14 C -0.157 4.157 15 N -0.732 5.732 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.967 3.033 21 H -0.284 1.284 22 H -0.302 1.302 23 H -0.275 1.275 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.176 0.824 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.413 0.587 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.373 0.627 39 H 0.249 0.751 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.927 5.701 2.868 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.079 4.079 4 N -0.217 5.217 5 C -0.076 4.076 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.299 3.701 9 O -0.467 6.467 10 N -0.362 5.362 11 C -0.001 4.001 12 C 0.052 3.948 13 H 0.080 0.920 14 C -0.217 4.217 15 N -0.373 5.373 16 C -0.367 4.367 17 H 0.096 0.904 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.797 3.203 21 H -0.211 1.211 22 H -0.229 1.229 23 H -0.201 1.201 24 C -0.101 4.101 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.193 0.807 29 H 0.169 0.831 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.249 0.751 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.739 6.775 2.258 20.054 hybrid contribution 1.119 -1.337 0.540 1.825 sum -17.620 5.438 2.797 18.651 Atomic orbital electron populations 1.20773 0.87667 1.04076 1.03701 1.21275 0.99349 0.93405 0.99921 1.23121 0.89545 0.98981 0.96265 1.67639 1.09706 1.31626 1.12737 1.22740 1.00582 0.87782 0.96454 1.20433 0.95033 0.95370 1.00764 1.20630 1.03001 0.96296 0.93397 1.20947 0.77271 0.79940 0.91905 1.90677 1.53514 1.54686 1.47828 1.45981 1.54113 1.26405 1.09661 1.21527 0.99236 0.96262 0.83043 1.20671 0.87369 0.94740 0.92056 0.92000 1.22254 1.01199 1.00887 0.97353 1.42603 1.27900 1.06752 1.60024 1.19531 1.04914 0.89082 1.23153 0.90409 1.25444 0.99585 0.98554 1.02663 1.69804 1.24002 1.21594 1.46297 0.85316 0.77678 0.79155 0.78185 1.21061 1.22862 1.20108 1.21673 0.93011 0.99552 0.95880 0.89376 0.89978 0.90721 0.80716 0.83093 0.84802 0.86271 0.75084 0.93591 0.90296 0.93651 0.90873 0.94112 0.79520 0.94223 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.04 71.24 0.72 -0.51 16 2 C -0.14 -2.71 5.90 -19.77 -0.12 -2.82 16 3 C 0.08 1.75 10.86 84.69 0.92 2.67 16 4 N -0.51 -14.48 10.36 -195.84 -2.03 -16.51 16 5 C 0.08 2.26 10.86 84.67 0.92 3.18 16 6 C -0.11 -2.84 4.39 -19.77 -0.09 -2.93 16 7 C -0.09 -2.10 5.86 29.10 0.17 -1.93 16 8 C 0.51 15.61 7.82 87.66 0.69 16.29 16 9 O -0.59 -22.29 16.03 -3.05 -0.05 -22.34 16 10 N -0.71 -21.83 5.39 -463.06 -2.49 -24.32 16 11 C 0.12 4.01 5.23 86.38 0.45 4.47 16 12 C 0.16 5.64 3.05 44.99 0.14 5.78 16 13 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 14 C -0.16 -5.11 9.49 71.98 0.68 -4.42 16 15 N -0.73 -33.25 4.56 -322.93 -1.47 -34.72 16 16 C -0.24 -11.91 9.93 84.04 0.83 -11.08 16 17 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.97 -56.17 13.06 21.65 0.28 -55.88 16 20 Si 0.97 43.80 29.55 68.60 2.03 45.83 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.08 -1.63 9.55 22.47 0.21 -1.41 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 28 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.13 2.18 8.10 -2.38 -0.02 2.16 16 31 H 0.12 2.48 8.09 -2.39 -0.02 2.46 16 32 H 0.41 12.56 8.14 -92.71 -0.75 11.81 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.37 18.77 7.80 -92.71 -0.72 18.05 16 39 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -68.11 344.31 1.83 -66.28 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.43 Total: 37.68 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.00 Total: 3.99 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -5.71 Total: -131.44 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.11 1.83 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567039561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.477 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds