Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39841 * 126.45658 * 2 1 4 4 C 1.35452 * 107.86163 * 180.02562 * 3 2 1 5 5 N 1.35529 * 108.87358 * 359.76784 * 4 3 2 6 6 H 0.97008 * 125.67921 * 180.26273 * 5 4 3 7 7 C 1.37650 * 108.64697 * 0.37546 * 5 4 3 8 8 C 1.46675 * 126.23840 * 179.88894 * 7 5 4 9 9 O 1.21697 * 120.00198 * 179.68997 * 8 7 5 10 10 N 1.34779 * 119.99730 * 359.69319 * 8 7 5 11 11 C 1.47023 * 125.64916 * 359.95450 * 10 8 7 12 12 C 1.54368 * 107.28806 * 178.94496 * 11 10 8 13 13 C 1.55153 * 102.92223 * 337.86602 * 12 11 10 14 14 H 1.09011 * 111.00187 * 277.35854 * 13 12 11 15 15 C 1.53001 * 111.01013 * 153.54913 * 13 12 11 16 16 N 1.46496 * 109.47205 * 178.17855 * 15 13 12 17 17 C 1.36945 * 119.99718 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47423 * 125.64888 * 180.02562 * 10 8 7 26 26 H 1.09003 * 109.47043 * 269.96178 * 1 2 3 27 27 H 1.09001 * 109.47080 * 29.96013 * 1 2 3 28 28 H 1.08992 * 109.47316 * 149.95991 * 1 2 3 29 29 H 1.07991 * 126.07032 * 0.02562 * 3 2 1 30 30 H 1.07998 * 125.56308 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.88176 * 298.39877 * 11 10 8 32 32 H 1.08997 * 109.88043 * 59.40528 * 11 10 8 33 33 H 1.09002 * 110.75858 * 219.49035 * 12 11 10 34 34 H 1.09009 * 110.70229 * 96.20587 * 12 11 10 35 35 H 1.08997 * 109.46922 * 58.16897 * 15 13 12 36 36 H 1.09000 * 109.46483 * 298.17716 * 15 13 12 37 37 H 0.96996 * 120.00499 * 359.97438 * 16 15 13 38 38 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36616 * 85.24815 * 25 10 8 40 40 H 1.09004 * 110.45952 * 322.97659 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6928 -0.0006 5 7 3.6284 -0.6624 0.0043 6 1 4.4191 -1.2244 0.0086 7 6 2.3263 -1.1089 -0.0005 8 6 1.8898 -2.5092 0.0000 9 8 0.7026 -2.7766 0.0011 10 7 2.8037 -3.4999 -0.0007 11 6 4.2628 -3.3196 -0.0029 12 6 4.8988 -4.7260 0.0243 13 6 3.7649 -5.6083 0.6099 14 1 3.7481 -5.5513 1.6984 15 6 3.9010 -7.0586 0.1418 16 7 2.8416 -7.8688 0.7477 17 6 2.7613 -9.2078 0.4722 18 1 3.4788 -9.6663 -0.1922 19 6 1.7578 -9.9757 1.0467 20 7 0.8830 -9.4167 1.8559 21 14 1.6478 -11.8021 0.6702 22 1 0.4979 -12.3901 1.4030 23 1 1.4567 -11.9959 -0.7895 24 1 2.9019 -12.4721 1.0986 25 6 2.5057 -4.9437 -0.0008 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3633 -0.8895 -0.5144 29 1 2.0137 2.1548 0.0004 30 1 4.4972 1.3252 -0.0003 31 1 4.5697 -2.7909 -0.9053 32 1 4.5680 -2.7559 0.8787 33 1 5.7742 -4.7416 0.6736 34 1 5.1589 -5.0508 -0.9833 35 1 4.8736 -7.4478 0.4430 36 1 3.8138 -7.0995 -0.9439 37 1 2.1969 -7.4569 1.3441 38 1 0.1816 -9.9533 2.2571 39 1 2.3456 -5.2979 -1.0191 40 1 1.6305 -5.1522 0.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567120992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = 26.110084 kcal Electronic energy + Delta-G solvation = -21257.327658 eV Core-core repulsion = 18073.134286 eV Total energy + Delta-G solvation = -3184.193372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56307 -39.50940 -37.54822 -34.77450 -32.87018 -32.13043 -30.56038 -30.00376 -28.60626 -27.12046 -25.38675 -23.77696 -22.21378 -21.49274 -20.90404 -20.05328 -19.05838 -17.82902 -16.99864 -16.33352 -16.13498 -15.32441 -14.83895 -14.52917 -14.12995 -13.87217 -13.74039 -13.37388 -13.21301 -13.18480 -12.76673 -12.67582 -12.52440 -12.34548 -12.18168 -11.86935 -11.64542 -11.34944 -10.87671 -10.70636 -10.65375 -10.50663 -10.07768 -9.86274 -9.68973 -8.93441 -8.88517 -8.72235 -8.23310 -6.94249 -5.75970 -3.06002 1.39174 2.58721 2.84453 3.07501 3.36470 3.44598 3.48775 3.50316 4.38134 4.45526 4.57961 4.73102 4.77309 4.86116 5.03865 5.13505 5.21158 5.24410 5.49788 5.57686 5.64828 5.76241 5.77780 5.85591 5.87431 5.89910 6.03931 6.06746 6.19469 6.30862 6.34884 6.35582 6.62014 6.65286 6.77052 6.84911 7.20927 7.50823 7.68730 8.18628 8.41993 9.53176 10.09465 10.43731 11.46505 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.003480 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.998652 B = 8044.030567 C = 8760.651738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.077 4.077 3 C -0.212 4.212 4 C 0.017 3.983 5 N -0.545 5.545 6 H 0.417 0.583 7 C -0.052 4.052 8 C 0.599 3.401 9 O -0.522 6.522 10 N -0.620 5.620 11 C 0.091 3.909 12 C -0.123 4.123 13 C -0.105 4.105 14 H 0.086 0.914 15 C 0.166 3.834 16 N -0.733 5.733 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.117 3.883 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.073 0.927 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.401 21.389 -4.077 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.236 4.236 4 C -0.119 4.119 5 N -0.146 5.146 6 H 0.259 0.741 7 C -0.164 4.164 8 C 0.389 3.611 9 O -0.398 6.398 10 N -0.355 5.355 11 C -0.033 4.033 12 C -0.161 4.161 13 C -0.125 4.125 14 H 0.104 0.896 15 C 0.037 3.963 16 N -0.377 5.377 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.004 4.004 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.187 0.813 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.834 20.981 -4.139 23.138 hybrid contribution 0.326 -1.001 0.052 1.054 sum 9.161 19.980 -4.087 22.356 Atomic orbital electron populations 1.20349 0.89279 1.02865 1.02295 1.19968 0.95940 0.90703 1.01940 1.20791 0.91838 0.98712 1.12298 1.22007 0.99527 0.83241 1.07124 1.42627 1.07589 1.07365 1.57000 0.74095 1.20248 0.83728 0.93446 1.19021 1.16715 0.85072 0.82379 0.76946 1.90844 1.15432 1.82894 1.50609 1.48496 1.05811 1.07528 1.73639 1.22193 0.81413 0.99556 1.00147 1.22647 0.98380 0.92329 1.02758 1.22607 0.93025 0.96021 1.00836 0.89577 1.20574 0.92899 0.86935 0.95848 1.42354 1.32845 1.06298 1.56241 1.19155 1.10429 0.84803 1.23158 0.91210 1.24758 0.98007 0.98201 0.99845 1.69653 1.18337 1.35207 1.34722 0.86259 0.77000 0.85209 0.77642 1.21659 1.21233 1.21288 1.22358 0.99167 0.76961 1.01913 0.91500 0.92100 0.90065 0.84077 0.81336 0.91775 0.91801 0.89699 0.89939 0.95785 0.96005 0.78165 0.93368 0.90875 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.83 36.01 0.35 -0.76 16 2 C -0.08 -0.99 6.21 -104.16 -0.65 -1.64 16 3 C -0.21 -2.13 10.76 -39.98 -0.43 -2.56 16 4 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 5 N -0.55 -5.26 5.61 -9.39 -0.05 -5.31 16 6 H 0.42 3.03 4.92 -40.82 -0.20 2.82 16 7 C -0.05 -0.70 6.89 -81.98 -0.56 -1.26 16 8 C 0.60 9.74 7.82 -12.85 -0.10 9.64 16 9 O -0.52 -10.30 15.06 5.19 0.08 -10.22 16 10 N -0.62 -8.98 3.33 -172.02 -0.57 -9.55 16 11 C 0.09 0.91 5.11 -3.04 -0.02 0.89 16 12 C -0.12 -1.29 6.42 -24.87 -0.16 -1.45 16 13 C -0.11 -1.60 3.07 -88.46 -0.27 -1.87 16 14 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 15 C 0.17 3.15 5.71 -4.04 -0.02 3.13 16 16 N -0.73 -18.35 5.50 -59.91 -0.33 -18.68 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.12 1.95 6.23 -2.52 -0.02 1.94 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.17 6.49 -51.93 -0.34 0.84 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.06 0.52 7.25 -51.93 -0.38 0.14 16 32 H 0.06 0.54 7.06 -51.93 -0.37 0.17 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.82 8.04 -51.92 -0.42 0.40 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16 37 H 0.38 10.23 7.63 -40.82 -0.31 9.92 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.07 1.27 7.96 -51.93 -0.41 0.85 16 40 H 0.09 1.69 8.04 -51.93 -0.42 1.28 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -34.14 327.25 -8.33 -42.47 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.76 Total: 8.05 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.32 Total: -1.43 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.23 Total: -61.29 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.14 -8.33 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567120992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.576 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds