Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39841 * 126.45658 * 2 1 4 4 C 1.35452 * 107.86163 * 180.02562 * 3 2 1 5 5 N 1.35529 * 108.87358 * 359.76784 * 4 3 2 6 6 H 0.97008 * 125.67921 * 180.26273 * 5 4 3 7 7 C 1.37650 * 108.64697 * 0.37546 * 5 4 3 8 8 C 1.46675 * 126.23840 * 179.88894 * 7 5 4 9 9 O 1.21697 * 120.00198 * 179.68997 * 8 7 5 10 10 N 1.34779 * 119.99730 * 359.69319 * 8 7 5 11 11 C 1.47023 * 125.64916 * 359.95450 * 10 8 7 12 12 C 1.54368 * 107.28806 * 178.94496 * 11 10 8 13 13 C 1.55153 * 102.92223 * 337.86602 * 12 11 10 14 14 H 1.09011 * 111.00187 * 277.35854 * 13 12 11 15 15 C 1.53001 * 111.01013 * 153.54913 * 13 12 11 16 16 N 1.46496 * 109.47205 * 178.17855 * 15 13 12 17 17 C 1.36945 * 119.99718 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47423 * 125.64888 * 180.02562 * 10 8 7 26 26 H 1.09003 * 109.47043 * 269.96178 * 1 2 3 27 27 H 1.09001 * 109.47080 * 29.96013 * 1 2 3 28 28 H 1.08992 * 109.47316 * 149.95991 * 1 2 3 29 29 H 1.07991 * 126.07032 * 0.02562 * 3 2 1 30 30 H 1.07998 * 125.56308 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.88176 * 298.39877 * 11 10 8 32 32 H 1.08997 * 109.88043 * 59.40528 * 11 10 8 33 33 H 1.09002 * 110.75858 * 219.49035 * 12 11 10 34 34 H 1.09009 * 110.70229 * 96.20587 * 12 11 10 35 35 H 1.08997 * 109.46922 * 58.16897 * 15 13 12 36 36 H 1.09000 * 109.46483 * 298.17716 * 15 13 12 37 37 H 0.96996 * 120.00499 * 359.97438 * 16 15 13 38 38 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36616 * 85.24815 * 25 10 8 40 40 H 1.09004 * 110.45952 * 322.97659 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6928 -0.0006 5 7 3.6284 -0.6624 0.0043 6 1 4.4191 -1.2244 0.0086 7 6 2.3263 -1.1089 -0.0005 8 6 1.8898 -2.5092 0.0000 9 8 0.7026 -2.7766 0.0011 10 7 2.8037 -3.4999 -0.0007 11 6 4.2628 -3.3196 -0.0029 12 6 4.8988 -4.7260 0.0243 13 6 3.7649 -5.6083 0.6099 14 1 3.7481 -5.5513 1.6984 15 6 3.9010 -7.0586 0.1418 16 7 2.8416 -7.8688 0.7477 17 6 2.7613 -9.2078 0.4722 18 1 3.4788 -9.6663 -0.1922 19 6 1.7578 -9.9757 1.0467 20 7 0.8830 -9.4167 1.8559 21 14 1.6478 -11.8021 0.6702 22 1 0.4979 -12.3901 1.4030 23 1 1.4567 -11.9959 -0.7895 24 1 2.9019 -12.4721 1.0986 25 6 2.5057 -4.9437 -0.0008 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3633 -0.8895 -0.5144 29 1 2.0137 2.1548 0.0004 30 1 4.4972 1.3252 -0.0003 31 1 4.5697 -2.7909 -0.9053 32 1 4.5680 -2.7559 0.8787 33 1 5.7742 -4.7416 0.6736 34 1 5.1589 -5.0508 -0.9833 35 1 4.8736 -7.4478 0.4430 36 1 3.8138 -7.0995 -0.9439 37 1 2.1969 -7.4569 1.3441 38 1 0.1816 -9.9533 2.2571 39 1 2.3456 -5.2979 -1.0191 40 1 1.6305 -5.1522 0.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567120992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = 2.311542 kcal Electronic energy + Delta-G solvation = -21258.359641 eV Core-core repulsion = 18073.134286 eV Total energy + Delta-G solvation = -3185.225355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43761 -40.61155 -38.81165 -36.52004 -34.19771 -33.38319 -32.15803 -30.91074 -29.86470 -28.15423 -26.95512 -25.24409 -23.69888 -22.43439 -21.80830 -21.33966 -19.97127 -19.26174 -18.58500 -17.47370 -17.26167 -16.62466 -16.41064 -15.74111 -15.35163 -15.14636 -15.06304 -14.70914 -14.63940 -14.14757 -13.92064 -13.83419 -13.62863 -13.48598 -13.18602 -13.14003 -13.01223 -12.72727 -12.56105 -12.32932 -12.16539 -11.92840 -11.69346 -11.65174 -11.11123 -10.93801 -9.92714 -9.68527 -9.11155 -9.01908 -7.95795 -5.25679 0.42304 1.46058 1.49786 1.55930 1.77929 1.82640 2.26457 2.27998 2.55242 3.32470 3.39334 3.49571 3.73976 3.83742 4.08859 4.15180 4.22009 4.25647 4.27968 4.39131 4.47426 4.56978 4.72932 4.78305 4.85340 4.86092 4.92675 4.97183 5.00088 5.11476 5.16593 5.21803 5.36233 5.43669 5.48470 5.78585 5.97423 6.25516 6.39839 6.57034 7.00333 7.31505 8.07745 8.28946 9.27680 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.003480 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.998652 B = 8044.030567 C = 8760.651738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.094 4.094 3 C -0.228 4.228 4 C 0.051 3.949 5 N -0.533 5.533 6 H 0.429 0.571 7 C -0.087 4.087 8 C 0.588 3.412 9 O -0.578 6.578 10 N -0.621 5.621 11 C 0.086 3.914 12 C -0.108 4.108 13 C -0.097 4.097 14 H 0.077 0.923 15 C 0.164 3.836 16 N -0.750 5.750 17 C -0.247 4.247 18 H 0.080 0.920 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.298 1.298 23 H -0.278 1.278 24 H -0.274 1.274 25 C 0.121 3.879 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.164 0.836 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.060 0.940 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.125 23.392 -4.884 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.252 4.252 4 C -0.086 4.086 5 N -0.135 5.135 6 H 0.274 0.726 7 C -0.199 4.199 8 C 0.381 3.619 9 O -0.458 6.458 10 N -0.354 5.354 11 C -0.036 4.036 12 C -0.146 4.146 13 C -0.116 4.116 14 H 0.095 0.905 15 C 0.037 3.963 16 N -0.392 5.392 17 C -0.378 4.378 18 H 0.098 0.902 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.805 3.195 22 H -0.224 1.224 23 H -0.204 1.204 24 H -0.200 1.200 25 C -0.002 4.002 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.181 0.819 30 H 0.236 0.764 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.661 22.988 -4.978 26.712 hybrid contribution -0.768 -1.497 0.265 1.704 sum 11.893 21.491 -4.712 25.010 Atomic orbital electron populations 1.20306 0.90046 1.02446 1.01924 1.20291 0.96126 0.92041 1.01887 1.21118 0.92177 0.98927 1.12940 1.22816 1.00521 0.82645 1.02649 1.42585 1.06471 1.08191 1.56251 0.72648 1.19829 0.85798 0.91718 1.22569 1.17268 0.84639 0.83860 0.76160 1.90802 1.17783 1.83927 1.53334 1.48533 1.07891 1.05992 1.72955 1.22524 0.78220 1.00020 1.02832 1.22673 0.97317 0.90845 1.03750 1.22420 0.94492 0.94434 1.00277 0.90484 1.20768 0.91478 0.88450 0.95573 1.42634 1.34059 1.06167 1.56348 1.19639 1.09918 0.86180 1.22097 0.90168 1.25638 0.98198 1.02792 1.00469 1.69837 1.19269 1.36641 1.36546 0.85173 0.76941 0.79892 0.77524 1.22424 1.20379 1.19964 1.22088 0.98595 0.79216 1.00281 0.91898 0.89761 0.93128 0.81886 0.76353 0.88764 0.89319 0.86487 0.88695 0.94392 0.95653 0.79746 0.94085 0.92194 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.32 9.83 71.24 0.70 -1.62 16 2 C -0.09 -2.37 6.21 -19.56 -0.12 -2.49 16 3 C -0.23 -3.86 10.76 22.01 0.24 -3.62 16 4 C 0.05 0.59 11.89 83.48 0.99 1.59 16 5 N -0.53 -8.38 5.61 -183.63 -1.03 -9.41 16 6 H 0.43 4.25 4.92 -92.70 -0.46 3.79 16 7 C -0.09 -2.28 6.89 40.35 0.28 -2.00 16 8 C 0.59 19.98 7.82 86.45 0.68 20.65 16 9 O -0.58 -24.98 15.06 -4.34 -0.07 -25.05 16 10 N -0.62 -18.11 3.33 -816.36 -2.72 -20.83 16 11 C 0.09 1.46 5.11 86.74 0.44 1.90 16 12 C -0.11 -1.90 6.42 31.80 0.20 -1.70 16 13 C -0.10 -2.89 3.07 -9.40 -0.03 -2.92 16 14 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 15 C 0.16 6.17 5.71 86.38 0.49 6.66 16 16 N -0.75 -38.48 5.50 -343.47 -1.89 -40.37 16 17 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 21 Si 0.98 46.91 29.55 68.60 2.03 48.93 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.12 4.26 6.23 86.86 0.54 4.80 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.61 6.49 -2.39 -0.02 1.59 16 29 H 0.16 1.95 8.06 -2.92 -0.02 1.92 16 30 H 0.22 0.35 8.06 -2.91 -0.02 0.32 16 31 H 0.09 1.10 7.25 -2.39 -0.02 1.08 16 32 H 0.09 1.11 7.06 -2.39 -0.02 1.10 16 33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.50 8.04 -2.38 -0.02 1.48 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.03 0.95 8.03 -2.39 -0.02 0.94 16 37 H 0.37 20.78 7.63 -92.71 -0.71 20.08 16 38 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.06 2.21 7.96 -2.39 -0.02 2.20 16 40 H 0.04 1.84 8.04 -2.38 -0.02 1.82 16 Total: -1.00 -80.34 327.25 2.23 -78.12 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.11 Total: 25.93 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.72 Total: 4.00 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -5.35 Total: -131.93 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.07 Total: -25.05 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -80.34 2.23 -78.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567120992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.428 kcal (2) G-P(sol) polarization free energy of solvation -80.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds