Wall clock time and date at job start Mon Mar 30 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39835 * 126.45947 * 2 1 4 4 C 1.35449 * 107.86581 * 180.26373 * 3 2 1 5 5 N 1.35526 * 108.87145 * 359.74412 * 4 3 2 6 6 H 0.97003 * 125.67619 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64497 * 0.02562 * 5 4 3 8 8 C 1.46678 * 126.23128 * 180.02562 * 7 5 4 9 9 O 1.21695 * 119.99631 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00116 * 0.02562 * 8 7 5 11 11 C 1.47019 * 125.65061 * 359.97305 * 10 8 7 12 12 C 1.54322 * 107.27223 * 181.07843 * 11 10 8 13 13 C 1.55154 * 102.94204 * 22.19795 * 12 11 10 14 14 H 1.08999 * 111.00353 * 82.56825 * 13 12 11 15 15 C 1.52999 * 111.00486 * 206.41955 * 13 12 11 16 16 N 1.46505 * 109.47057 * 178.64648 * 15 13 12 17 17 C 1.36935 * 119.99667 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00527 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00035 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99582 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47454 * 59.99459 * 21 19 17 23 23 H 1.48505 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47100 * 299.99646 * 21 19 17 25 25 C 1.47426 * 125.64729 * 180.02562 * 10 8 7 26 26 H 1.08993 * 109.47052 * 270.17449 * 1 2 3 27 27 H 1.09005 * 109.47123 * 30.17918 * 1 2 3 28 28 H 1.09002 * 109.47127 * 150.17363 * 1 2 3 29 29 H 1.08009 * 126.06495 * 0.02562 * 3 2 1 30 30 H 1.08005 * 125.56431 * 179.76380 * 4 3 2 31 31 H 1.09001 * 109.88389 * 300.50344 * 11 10 8 32 32 H 1.09003 * 109.87977 * 61.66684 * 11 10 8 33 33 H 1.08999 * 110.71849 * 140.55494 * 12 11 10 34 34 H 1.08995 * 110.72403 * 263.65428 * 12 11 10 35 35 H 1.08993 * 109.47274 * 298.64896 * 15 13 12 36 36 H 1.09005 * 109.47002 * 58.65139 * 15 13 12 37 37 H 0.96994 * 120.00157 * 0.02562 * 16 15 13 38 38 H 0.97001 * 119.99867 * 180.02562 * 20 19 17 39 39 H 1.08998 * 110.36718 * 274.68923 * 25 10 8 40 40 H 1.09005 * 110.36600 * 37.01484 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6217 0.6928 -0.0059 5 7 3.6283 -0.6625 -0.0039 6 1 4.4190 -1.2244 -0.0075 7 6 2.3262 -1.1089 0.0028 8 6 1.8899 -2.5092 0.0075 9 8 0.7026 -2.7765 0.0129 10 7 2.8037 -3.4999 0.0058 11 6 4.2628 -3.3197 -0.0012 12 6 4.8980 -4.7258 -0.0284 13 6 3.7613 -5.6095 -0.6065 14 1 3.7384 -5.5540 -1.6948 15 6 3.9002 -7.0588 -0.1363 16 7 2.7942 -7.8549 -0.6742 17 6 2.7079 -9.1905 -0.3847 18 1 3.4553 -9.6571 0.2399 19 6 1.6603 -9.9450 -0.8948 20 7 0.7497 -9.3765 -1.6564 21 14 1.5428 -11.7671 -0.5004 22 1 1.4339 -11.9495 0.9694 23 1 0.3421 -12.3400 -1.1602 24 1 2.7588 -12.4602 -0.9963 25 6 2.5057 -4.9437 0.0094 26 1 -0.3633 0.0031 1.0276 27 1 -0.3634 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5111 29 1 2.0136 2.1549 0.0004 30 1 4.4973 1.3252 -0.0111 31 1 4.5630 -2.7600 -0.8870 32 1 4.5750 -2.7893 0.8985 33 1 5.7698 -4.7425 -0.6824 34 1 5.1663 -5.0474 0.9779 35 1 4.8471 -7.4664 -0.4902 36 1 3.8751 -7.0914 0.9530 37 1 2.1232 -7.4360 -1.2355 38 1 0.0174 -9.9036 -2.0126 39 1 2.3511 -5.2965 1.0290 40 1 1.6276 -5.1514 -0.6021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567120993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:37 Heat of formation + Delta-G solvation = 2.287637 kcal Electronic energy + Delta-G solvation = -21273.132242 eV Core-core repulsion = 18087.905850 eV Total energy + Delta-G solvation = -3185.226391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43801 -40.61466 -38.81460 -36.51904 -34.19674 -33.38311 -32.15836 -30.91004 -29.86037 -28.15595 -26.95453 -25.25641 -23.69775 -22.43393 -21.80523 -21.32117 -19.96990 -19.26888 -18.58458 -17.47408 -17.26246 -16.62336 -16.41992 -15.71306 -15.36363 -15.14920 -15.08124 -14.72250 -14.63180 -14.13600 -13.93716 -13.82733 -13.62850 -13.45383 -13.18575 -13.14875 -13.01882 -12.72204 -12.56105 -12.32920 -12.17494 -11.92390 -11.69338 -11.64660 -11.10984 -10.93925 -9.92690 -9.68428 -9.11104 -9.01964 -7.95755 -5.25623 0.42412 1.46002 1.49762 1.55924 1.78109 1.82646 2.26936 2.27728 2.55244 3.32631 3.39118 3.49658 3.73932 3.84000 4.09388 4.15662 4.22053 4.25669 4.27943 4.39081 4.47274 4.56740 4.72742 4.78819 4.85139 4.86007 4.92908 4.97411 5.00430 5.11633 5.16133 5.21967 5.36418 5.43721 5.48360 5.78635 5.97446 6.25466 6.40036 6.57179 7.00516 7.31475 8.07751 8.28983 9.27726 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032265 B = 0.003508 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.599823 B = 7978.995682 C = 8716.207551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.094 4.094 3 C -0.228 4.228 4 C 0.051 3.949 5 N -0.533 5.533 6 H 0.429 0.571 7 C -0.087 4.087 8 C 0.588 3.412 9 O -0.578 6.578 10 N -0.621 5.621 11 C 0.086 3.914 12 C -0.108 4.108 13 C -0.096 4.096 14 H 0.077 0.923 15 C 0.164 3.836 16 N -0.750 5.750 17 C -0.247 4.247 18 H 0.081 0.919 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.122 3.878 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.164 0.836 30 H 0.220 0.780 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.059 0.941 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 23.286 4.237 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.252 4.252 4 C -0.086 4.086 5 N -0.135 5.135 6 H 0.274 0.726 7 C -0.199 4.199 8 C 0.381 3.619 9 O -0.459 6.459 10 N -0.354 5.354 11 C -0.036 4.036 12 C -0.146 4.146 13 C -0.116 4.116 14 H 0.096 0.904 15 C 0.037 3.963 16 N -0.392 5.392 17 C -0.378 4.378 18 H 0.098 0.902 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.805 3.195 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.200 1.200 25 C -0.001 4.001 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.181 0.819 30 H 0.237 0.763 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.051 22.882 4.331 26.696 hybrid contribution -0.796 -1.493 -0.192 1.703 sum 12.254 21.388 4.139 24.995 Atomic orbital electron populations 1.20305 0.90056 1.02382 1.01978 1.20287 0.96122 0.92047 1.01888 1.21119 0.92177 0.98924 1.12946 1.22817 1.00520 0.82643 1.02642 1.42581 1.06464 1.08191 1.56253 0.72648 1.19827 0.85804 0.91706 1.22572 1.17273 0.84639 0.83871 0.76166 1.90802 1.17800 1.83931 1.53323 1.48537 1.07899 1.05989 1.72957 1.22523 0.78217 1.00047 1.02828 1.22662 0.97288 0.90846 1.03812 1.22412 0.94492 0.94432 1.00272 0.90412 1.20773 0.90797 0.88619 0.96090 1.42633 1.29211 1.06743 1.60632 1.19642 1.07146 0.86537 1.24513 0.90154 1.25643 0.97737 1.02802 1.00936 1.69838 1.15779 1.36845 1.39832 0.85171 0.76804 0.79880 0.77657 1.20371 1.22436 1.19961 1.22067 0.98617 0.79205 1.00241 0.91723 0.89825 0.93253 0.81882 0.76338 0.89268 0.88766 0.86448 0.88734 0.94421 0.95600 0.79742 0.94092 0.92300 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.33 9.83 71.24 0.70 -1.63 16 2 C -0.09 -2.38 6.21 -19.57 -0.12 -2.50 16 3 C -0.23 -3.87 10.76 22.01 0.24 -3.63 16 4 C 0.05 0.60 11.89 83.48 0.99 1.59 16 5 N -0.53 -8.40 5.61 -183.63 -1.03 -9.43 16 6 H 0.43 4.26 4.92 -92.71 -0.46 3.80 16 7 C -0.09 -2.29 6.89 40.35 0.28 -2.01 16 8 C 0.59 20.08 7.82 86.45 0.68 20.75 16 9 O -0.58 -25.14 15.06 -4.33 -0.07 -25.20 16 10 N -0.62 -18.22 3.33 -816.53 -2.72 -20.94 16 11 C 0.09 1.46 5.11 86.73 0.44 1.90 16 12 C -0.11 -1.91 6.42 31.78 0.20 -1.70 16 13 C -0.10 -2.89 3.10 -9.41 -0.03 -2.92 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C 0.16 6.16 5.71 86.38 0.49 6.66 16 16 N -0.75 -38.52 5.45 -343.44 -1.87 -40.39 16 17 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 20 N -0.97 -61.71 13.06 21.65 0.28 -61.42 16 21 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.12 4.31 6.08 86.85 0.53 4.83 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.05 1.59 6.49 -2.39 -0.02 1.57 16 29 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 30 H 0.22 0.35 8.06 -2.91 -0.02 0.33 16 31 H 0.09 1.12 7.09 -2.39 -0.02 1.10 16 32 H 0.09 1.11 7.24 -2.39 -0.02 1.09 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.50 8.04 -2.39 -0.02 1.49 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.03 0.97 8.10 -2.38 -0.02 0.95 16 37 H 0.37 20.82 7.53 -92.71 -0.70 20.12 16 38 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.06 2.21 8.00 -2.39 -0.02 2.19 16 40 H 0.04 1.84 8.04 -2.38 -0.02 1.82 16 Total: -1.00 -80.56 327.11 2.23 -78.32 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.10 Total: 26.02 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.71 Total: 4.07 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -5.34 Total: -132.18 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.07 Total: -25.20 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.56 2.23 -78.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567120993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.612 kcal (2) G-P(sol) polarization free energy of solvation -80.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds