Wall clock time and date at job start Mon Mar 30 2020 01:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38352 * 120.35454 * 2 1 4 4 N 1.31920 * 121.08737 * 180.02562 * 3 2 1 5 5 C 1.31702 * 121.87604 * 359.68154 * 4 3 2 6 6 C 1.39522 * 120.56426 * 0.58294 * 5 4 3 7 7 C 1.47846 * 120.55618 * 179.72693 * 6 5 4 8 8 O 1.21551 * 119.99550 * 179.72177 * 7 6 5 9 9 N 1.34770 * 120.00064 * 359.72357 * 7 6 5 10 10 C 1.46496 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47294 * 54.99887 * 12 11 10 14 14 C 1.53006 * 109.47104 * 175.00526 * 12 11 10 15 15 N 1.46505 * 109.47024 * 294.99928 * 12 11 10 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.38360 * 120.34895 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47542 * 269.97874 * 1 2 3 26 26 H 1.09005 * 109.47051 * 29.98019 * 1 2 3 27 27 H 1.08994 * 109.47252 * 149.97453 * 1 2 3 28 28 H 1.08003 * 119.45332 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.71396 * 180.28872 * 5 4 3 30 30 H 0.97004 * 120.00257 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46967 * 60.00147 * 10 9 7 32 32 H 1.09002 * 109.47323 * 299.99763 * 10 9 7 33 33 H 1.09003 * 109.47011 * 59.99676 * 11 10 9 34 34 H 1.09002 * 109.46836 * 300.00173 * 11 10 9 35 35 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 36 36 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 37 37 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 38 38 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 39 39 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.85061 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1013 0.0052 6 6 3.6053 -1.1437 -0.0002 7 6 4.4023 -2.3890 0.0001 8 8 3.8432 -3.4683 0.0005 9 7 5.7486 -2.3274 0.0000 10 6 6.5382 -3.5614 0.0009 11 6 8.0282 -3.2135 -0.0001 12 6 8.8528 -4.5021 0.0002 13 1 8.5518 -5.1263 -0.8410 14 6 10.3381 -4.1572 -0.1263 15 7 8.6250 -5.2274 1.2526 16 6 8.8094 -6.5833 1.3018 17 1 9.1232 -7.1181 0.4175 18 6 8.5991 -7.2697 2.4899 19 7 8.2173 -6.6179 3.5677 20 14 8.8582 -9.1184 2.5590 21 1 9.2832 -9.6089 1.2233 22 1 9.9086 -9.4340 3.5601 23 1 7.5880 -9.7820 2.9483 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6630 2.1274 0.0004 29 1 5.3135 0.1559 0.0093 30 1 6.1948 -1.4661 -0.0006 31 1 6.3012 -4.1450 -0.8887 32 1 6.3014 -4.1437 0.8914 33 1 8.2655 -2.6295 0.8893 34 1 8.2647 -2.6313 -0.8907 35 1 10.5076 -3.6176 -1.0582 36 1 10.6392 -3.5330 0.7149 37 1 10.9256 -5.0752 -0.1266 38 1 8.3436 -4.7470 2.0469 39 1 8.0699 -7.0976 4.3979 40 1 1.6857 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567210835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:02 Heat of formation + Delta-G solvation = -4.048386 kcal Electronic energy + Delta-G solvation = -20540.464102 eV Core-core repulsion = 17354.962960 eV Total energy + Delta-G solvation = -3185.501142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80893 -39.06902 -36.60178 -34.59553 -33.87185 -32.58456 -32.04041 -29.31553 -28.16626 -27.55454 -24.93667 -23.70836 -22.99950 -22.33026 -20.61635 -19.68093 -17.92287 -17.24666 -17.03410 -16.66427 -15.52825 -15.35282 -14.89117 -14.45847 -14.43498 -13.91448 -13.58578 -13.49842 -13.33126 -13.16513 -12.92504 -12.85510 -12.49318 -12.22408 -12.04269 -11.54761 -11.11137 -10.93175 -10.76423 -10.64873 -10.36335 -10.18860 -10.03901 -9.92538 -9.64151 -9.57902 -9.29880 -8.93588 -8.84559 -6.94301 -5.74125 -3.02803 0.41140 0.90531 2.80518 3.15622 3.45806 3.51429 3.53578 3.63339 4.00533 4.39063 4.52368 4.60727 4.61950 4.65744 4.86214 5.13251 5.22180 5.30545 5.34419 5.38651 5.56459 5.60241 5.66571 5.77804 5.86800 5.88265 6.06019 6.16923 6.27016 6.32879 6.38754 6.44288 6.63000 6.69264 6.86414 7.06347 7.51862 7.56172 7.73571 8.23000 8.44157 9.55697 10.12183 10.46727 11.48575 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.003268 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.227330 B = 8564.844230 C = 9339.488762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.145 4.145 3 C 0.115 3.885 4 N -0.484 5.484 5 C 0.125 3.875 6 C -0.175 4.175 7 C 0.556 3.444 8 O -0.529 6.529 9 N -0.721 5.721 10 C 0.121 3.879 11 C -0.133 4.133 12 C 0.174 3.826 13 H 0.050 0.950 14 C -0.163 4.163 15 N -0.724 5.724 16 C -0.237 4.237 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.021 4.021 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 17.291 -8.975 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.042 4.042 4 N -0.192 5.192 5 C -0.033 4.033 6 C -0.180 4.180 7 C 0.341 3.659 8 O -0.407 6.407 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.172 4.172 12 C 0.064 3.936 13 H 0.068 0.932 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.047 4.047 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.024 17.099 -9.017 22.253 hybrid contribution -0.010 -1.264 0.465 1.347 sum -11.034 15.836 -8.551 21.110 Atomic orbital electron populations 1.20739 0.89605 1.03421 1.02969 1.20952 0.98047 0.93748 1.01988 1.22882 0.89941 0.97655 0.93675 1.67689 1.08065 1.30956 1.12441 1.22971 1.00294 0.86832 0.93207 1.21121 0.95254 0.95022 1.06603 1.18007 0.82403 0.88251 0.77210 1.90818 1.71030 1.29558 1.49247 1.46038 1.05747 1.10720 1.74655 1.21526 0.89848 0.84905 1.03819 1.22076 0.93631 0.99765 1.01730 1.20150 0.91806 0.90483 0.91164 0.93248 1.22424 0.99765 1.00983 0.99194 1.42467 1.81622 1.05073 1.07436 1.19264 1.38219 0.83807 0.95527 0.91153 1.24729 1.02427 0.97889 0.95893 1.69665 1.53292 1.34531 1.00587 0.86148 0.77275 0.85713 0.77249 1.20579 1.21974 1.21891 1.21680 0.92566 0.99093 0.91371 0.90578 0.90954 0.90954 0.82365 0.82373 0.76986 0.91536 0.89435 0.91492 0.91819 0.94555 0.93498 0.92708 0.78287 0.93613 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.03 36.00 0.36 -0.27 16 2 C -0.15 -1.27 5.89 -104.54 -0.62 -1.89 16 3 C 0.12 1.02 10.85 -17.47 -0.19 0.83 16 4 N -0.48 -5.21 10.35 -12.91 -0.13 -5.34 16 5 C 0.13 1.32 10.71 -17.13 -0.18 1.14 16 6 C -0.17 -2.13 5.89 -104.82 -0.62 -2.75 16 7 C 0.56 8.42 7.78 -12.33 -0.10 8.33 16 8 O -0.53 -10.26 16.42 5.32 0.09 -10.17 16 9 N -0.72 -9.66 5.51 -61.25 -0.34 -9.99 16 10 C 0.12 1.98 5.56 -4.04 -0.02 1.96 16 11 C -0.13 -1.99 4.87 -26.73 -0.13 -2.12 16 12 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 13 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 14 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 15 N -0.72 -17.63 4.57 -53.42 -0.24 -17.87 16 16 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 20 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 C -0.02 -0.23 9.39 -38.87 -0.37 -0.60 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.16 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.16 1.26 6.42 -52.49 -0.34 0.92 16 30 H 0.40 3.92 6.54 -40.82 -0.27 3.66 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 39 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.15 1.64 7.74 -52.48 -0.41 1.23 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -33.70 341.28 -7.65 -41.36 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.92 Total: 8.72 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.95 Total: -1.89 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.01 Total: -60.77 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.70 -7.65 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567210835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.307 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds