Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38352 * 120.35454 * 2 1 4 4 N 1.31920 * 121.08737 * 180.02562 * 3 2 1 5 5 C 1.31702 * 121.87604 * 359.68154 * 4 3 2 6 6 C 1.39522 * 120.56426 * 0.58294 * 5 4 3 7 7 C 1.47846 * 120.55618 * 179.72693 * 6 5 4 8 8 O 1.21551 * 119.99550 * 179.72177 * 7 6 5 9 9 N 1.34770 * 120.00064 * 359.72357 * 7 6 5 10 10 C 1.46496 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47294 * 54.99887 * 12 11 10 14 14 C 1.53006 * 109.47104 * 175.00526 * 12 11 10 15 15 N 1.46505 * 109.47024 * 294.99928 * 12 11 10 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.38360 * 120.34895 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47542 * 269.97874 * 1 2 3 26 26 H 1.09005 * 109.47051 * 29.98019 * 1 2 3 27 27 H 1.08994 * 109.47252 * 149.97453 * 1 2 3 28 28 H 1.08003 * 119.45332 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.71396 * 180.28872 * 5 4 3 30 30 H 0.97004 * 120.00257 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46967 * 60.00147 * 10 9 7 32 32 H 1.09002 * 109.47323 * 299.99763 * 10 9 7 33 33 H 1.09003 * 109.47011 * 59.99676 * 11 10 9 34 34 H 1.09002 * 109.46836 * 300.00173 * 11 10 9 35 35 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 36 36 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 37 37 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 38 38 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 39 39 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.85061 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1013 0.0052 6 6 3.6053 -1.1437 -0.0002 7 6 4.4023 -2.3890 0.0001 8 8 3.8432 -3.4683 0.0005 9 7 5.7486 -2.3274 0.0000 10 6 6.5382 -3.5614 0.0009 11 6 8.0282 -3.2135 -0.0001 12 6 8.8528 -4.5021 0.0002 13 1 8.5518 -5.1263 -0.8410 14 6 10.3381 -4.1572 -0.1263 15 7 8.6250 -5.2274 1.2526 16 6 8.8094 -6.5833 1.3018 17 1 9.1232 -7.1181 0.4175 18 6 8.5991 -7.2697 2.4899 19 7 8.2173 -6.6179 3.5677 20 14 8.8582 -9.1184 2.5590 21 1 9.2832 -9.6089 1.2233 22 1 9.9086 -9.4340 3.5601 23 1 7.5880 -9.7820 2.9483 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6630 2.1274 0.0004 29 1 5.3135 0.1559 0.0093 30 1 6.1948 -1.4661 -0.0006 31 1 6.3012 -4.1450 -0.8887 32 1 6.3014 -4.1437 0.8914 33 1 8.2655 -2.6295 0.8893 34 1 8.2647 -2.6313 -0.8907 35 1 10.5076 -3.6176 -1.0582 36 1 10.6392 -3.5330 0.7149 37 1 10.9256 -5.0752 -0.1266 38 1 8.3436 -4.7470 2.0469 39 1 8.0699 -7.0976 4.3979 40 1 1.6857 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567210835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -27.953599 kcal Electronic energy + Delta-G solvation = -20541.500710 eV Core-core repulsion = 17354.962960 eV Total energy + Delta-G solvation = -3186.537750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71549 -40.17994 -38.14626 -35.99858 -34.67287 -34.18056 -33.22421 -31.00628 -29.61454 -28.20348 -26.13876 -25.52080 -23.82464 -23.58916 -21.86282 -21.08187 -19.31697 -18.80462 -17.96117 -17.52830 -16.98953 -16.55322 -16.43736 -15.74923 -15.47429 -15.32991 -15.17944 -14.48056 -14.43264 -14.20941 -14.06707 -13.61299 -13.56603 -13.47774 -13.24103 -12.86486 -12.82775 -12.63038 -12.28998 -12.23786 -12.10004 -11.69830 -11.60505 -11.31285 -10.95251 -10.91448 -10.51690 -10.23739 -9.94664 -8.97634 -7.92720 -5.19289 -0.43306 0.12168 1.45680 1.47001 1.56114 1.74365 2.02100 2.57065 2.76839 3.26769 3.41799 3.62695 3.77544 3.81206 3.89784 3.91515 3.98965 4.16080 4.22320 4.36473 4.49118 4.67368 4.74171 4.76916 4.82254 4.87954 4.96470 5.02493 5.09911 5.15285 5.19775 5.23672 5.36433 5.40601 5.54803 5.57147 5.62581 6.30575 6.42743 6.78546 7.09856 7.36520 8.14635 8.35652 9.31076 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.003268 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.227330 B = 8564.844230 C = 9339.488762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.499 5.499 5 C 0.129 3.871 6 C -0.193 4.193 7 C 0.554 3.446 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.132 3.868 11 C -0.117 4.117 12 C 0.164 3.836 13 H 0.043 0.957 14 C -0.153 4.153 15 N -0.736 5.736 16 C -0.230 4.230 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.299 1.299 24 C -0.038 4.038 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.194 0.806 29 H 0.182 0.818 30 H 0.416 0.584 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.032 0.968 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 19.705 -10.469 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.036 4.036 4 N -0.207 5.207 5 C -0.029 4.029 6 C -0.199 4.199 7 C 0.341 3.659 8 O -0.464 6.464 9 N -0.356 5.356 10 C 0.008 3.992 11 C -0.155 4.155 12 C 0.055 3.945 13 H 0.061 0.939 14 C -0.213 4.213 15 N -0.377 5.377 16 C -0.363 4.363 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.226 1.226 24 C -0.064 4.064 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.211 0.789 29 H 0.198 0.802 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.204 0.796 39 H 0.057 0.943 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.021 19.567 -10.569 24.820 hybrid contribution -0.064 -1.900 0.842 2.079 sum -11.085 17.667 -9.727 23.014 Atomic orbital electron populations 1.20827 0.87284 1.04632 1.03864 1.21246 0.99634 0.92695 1.00523 1.23510 0.89571 0.98972 0.91565 1.67792 1.09085 1.30680 1.13104 1.23243 1.01400 0.85978 0.92270 1.20919 0.95445 0.94173 1.09327 1.18528 0.82789 0.88660 0.75887 1.90784 1.72040 1.31743 1.51868 1.45798 1.05267 1.10753 1.73803 1.21185 0.91403 0.85626 1.00957 1.21939 0.91334 0.98102 1.04153 1.20462 0.93809 0.91747 0.88448 0.93856 1.22262 0.97375 1.00408 1.01275 1.42675 1.81574 1.04414 1.08992 1.19635 1.35867 0.85479 0.95276 0.90776 1.25490 1.03728 1.01953 0.95956 1.69814 1.55576 1.35843 1.00937 0.85169 0.76567 0.81042 0.77632 1.19005 1.22102 1.22617 1.21813 0.92545 0.99913 0.92132 0.89696 0.88558 0.90986 0.78902 0.80166 0.74602 0.92634 0.94276 0.90797 0.87412 0.90523 0.93601 0.94877 0.79641 0.94317 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.03 71.23 0.71 -0.27 16 2 C -0.14 -2.18 5.89 -19.81 -0.12 -2.30 16 3 C 0.12 1.78 10.85 84.71 0.92 2.70 16 4 N -0.50 -9.51 10.35 -194.75 -2.01 -11.52 16 5 C 0.13 2.50 10.71 85.02 0.91 3.41 16 6 C -0.19 -4.68 5.89 -19.99 -0.12 -4.80 16 7 C 0.55 17.23 7.78 86.79 0.68 17.90 16 8 O -0.58 -23.96 16.42 -3.88 -0.06 -24.02 16 9 N -0.70 -18.60 5.51 -465.98 -2.57 -21.16 16 10 C 0.13 4.36 5.56 86.38 0.48 4.84 16 11 C -0.12 -3.26 4.87 30.59 0.15 -3.12 16 12 C 0.16 6.02 2.89 44.99 0.13 6.15 16 13 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 14 C -0.15 -4.95 9.49 71.98 0.68 -4.27 16 15 N -0.74 -36.36 4.57 -322.93 -1.48 -37.83 16 16 C -0.23 -12.85 9.93 84.04 0.83 -12.01 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 19 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 20 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 24 C -0.04 -0.84 9.39 22.73 0.21 -0.62 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.43 8.09 -2.38 -0.02 0.41 16 27 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.18 2.42 6.42 -2.91 -0.02 2.40 16 30 H 0.42 7.43 6.54 -92.71 -0.61 6.82 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.69 7.75 -2.39 -0.02 1.67 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 39 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 40 H 0.14 3.24 7.74 -2.91 -0.02 3.22 16 Total: -1.00 -76.36 341.28 1.85 -74.51 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.28 Total: 27.53 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.94 Total: 3.43 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -5.78 Total: -130.93 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -76.36 1.85 -74.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567210835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.553 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds