Wall clock time and date at job start Mon Mar 30 2020 01:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38351 * 120.34767 * 2 1 4 4 N 1.31930 * 121.07796 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.87922 * 359.65635 * 4 3 2 6 6 C 1.39520 * 120.56537 * 0.63158 * 5 4 3 7 7 C 1.47846 * 120.56117 * 179.68080 * 6 5 4 8 8 O 1.21552 * 120.00237 * 179.44956 * 7 6 5 9 9 N 1.34777 * 119.99810 * 359.71860 * 7 6 5 10 10 C 1.46496 * 120.00262 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47473 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47097 * 304.99734 * 12 11 10 14 14 C 1.53001 * 109.47365 * 184.99753 * 12 11 10 15 15 N 1.46504 * 109.46900 * 64.99965 * 12 11 10 16 16 C 1.36942 * 119.99723 * 204.99919 * 15 12 11 17 17 H 1.07999 * 120.00062 * 0.02562 * 16 15 12 18 18 C 1.38809 * 119.99756 * 179.97438 * 16 15 12 19 19 N 1.31616 * 120.00310 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46857 * 90.00222 * 20 18 16 22 22 H 1.48494 * 109.46919 * 210.00316 * 20 18 16 23 23 H 1.48501 * 109.46830 * 330.00193 * 20 18 16 24 24 C 1.38358 * 120.34554 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47567 * 269.98334 * 1 2 3 26 26 H 1.09004 * 109.47088 * 29.97689 * 1 2 3 27 27 H 1.09001 * 109.47392 * 149.97510 * 1 2 3 28 28 H 1.08001 * 119.46352 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.72194 * 180.33045 * 5 4 3 30 30 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.46875 * 300.00167 * 10 9 7 32 32 H 1.08992 * 109.47174 * 59.99739 * 10 9 7 33 33 H 1.09004 * 109.46862 * 299.99801 * 11 10 9 34 34 H 1.09000 * 109.47250 * 59.99778 * 11 10 9 35 35 H 1.09007 * 109.46967 * 60.00116 * 14 12 11 36 36 H 1.09002 * 109.47083 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.46998 * 300.00042 * 14 12 11 38 38 H 0.96993 * 120.00136 * 25.00208 * 15 12 11 39 39 H 0.96997 * 120.00061 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.85941 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1014 0.0057 6 6 3.6053 -1.1436 -0.0002 7 6 4.4022 -2.3889 -0.0003 8 8 3.8432 -3.4683 0.0046 9 7 5.7486 -2.3274 -0.0005 10 6 6.5383 -3.5613 -0.0012 11 6 8.0281 -3.2133 -0.0006 12 6 8.8529 -4.5020 -0.0007 13 1 8.5520 -5.1260 0.8408 14 6 10.3381 -4.1570 0.1255 15 7 8.6248 -5.2276 -1.2529 16 6 8.8093 -6.5836 -1.3017 17 1 9.1225 -7.1182 -0.4171 18 6 8.5927 -7.2712 -2.4880 19 7 8.2106 -6.6198 -3.5659 20 14 8.8437 -9.1211 -2.5545 21 1 7.5705 -9.8058 -2.2148 22 1 9.2675 -9.5142 -3.9223 23 1 9.8924 -9.5137 -1.5792 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6629 2.1275 0.0004 29 1 5.3135 0.1559 0.0104 30 1 6.1947 -1.4661 -0.0002 31 1 6.3015 -4.1447 0.8885 32 1 6.3012 -4.1438 -0.8914 33 1 8.2653 -2.6297 -0.8902 34 1 8.2649 -2.6309 0.8898 35 1 10.5078 -3.6171 1.0571 36 1 10.9257 -5.0751 0.1250 37 1 10.6390 -3.5330 -0.7161 38 1 8.3432 -4.7475 -2.0472 39 1 8.0596 -7.1002 -4.3949 40 1 1.6858 -2.1405 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567210836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:04 Heat of formation + Delta-G solvation = -3.978712 kcal Electronic energy + Delta-G solvation = -20541.106962 eV Core-core repulsion = 17355.608842 eV Total energy + Delta-G solvation = -3185.498120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80848 -39.06823 -36.60050 -34.59438 -33.87151 -32.58346 -32.03927 -29.31443 -28.16435 -27.55407 -24.93607 -23.70600 -22.99887 -22.32915 -20.61555 -19.67936 -17.92245 -17.24515 -17.03367 -16.66376 -15.52251 -15.35893 -14.88453 -14.46291 -14.43471 -13.91467 -13.58610 -13.49347 -13.33947 -13.15736 -12.92372 -12.85604 -12.48877 -12.22284 -12.04049 -11.54745 -11.10910 -10.92538 -10.75083 -10.65314 -10.36027 -10.20398 -10.03859 -9.94221 -9.63678 -9.57831 -9.29915 -8.93098 -8.84247 -6.94189 -5.73831 -3.02626 0.41138 0.90554 2.80577 3.15651 3.46406 3.51396 3.52732 3.63340 4.00545 4.39082 4.52450 4.60834 4.62089 4.65763 4.86341 5.13298 5.21712 5.30674 5.34602 5.38770 5.56631 5.60319 5.66654 5.77831 5.86876 5.88364 6.06155 6.17030 6.27043 6.32994 6.38930 6.44423 6.63110 6.69428 6.86528 7.06548 7.51916 7.56211 7.73213 8.23056 8.44505 9.55918 10.12389 10.46929 11.48808 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.003271 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.409367 B = 8557.798893 C = 9335.160578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.145 4.145 3 C 0.115 3.885 4 N -0.484 5.484 5 C 0.125 3.875 6 C -0.175 4.175 7 C 0.556 3.444 8 O -0.529 6.529 9 N -0.721 5.721 10 C 0.121 3.879 11 C -0.133 4.133 12 C 0.175 3.825 13 H 0.049 0.951 14 C -0.163 4.163 15 N -0.724 5.724 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.021 4.021 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 17.287 8.978 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.042 4.042 4 N -0.192 5.192 5 C -0.033 4.033 6 C -0.180 4.180 7 C 0.341 3.659 8 O -0.407 6.407 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.172 4.172 12 C 0.064 3.936 13 H 0.067 0.933 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.047 4.047 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.995 17.096 9.001 22.230 hybrid contribution -0.026 -1.270 -0.439 1.344 sum -11.021 15.826 8.562 21.100 Atomic orbital electron populations 1.20741 0.89606 1.03510 1.02881 1.20951 0.98048 0.93747 1.01991 1.22885 0.89938 0.97654 0.93673 1.67687 1.08066 1.30961 1.12439 1.22968 1.00293 0.86830 0.93211 1.21123 0.95254 0.95022 1.06601 1.18010 0.82402 0.88250 0.77208 1.90819 1.71036 1.29552 1.49248 1.46038 1.05747 1.10719 1.74657 1.21522 0.89849 0.84906 1.03818 1.22075 0.93631 0.99769 1.01729 1.20148 0.91806 0.90477 0.91164 0.93258 1.22427 0.99767 1.00987 0.99190 1.42459 1.81633 1.05057 1.07441 1.19218 1.38313 0.83783 0.95590 0.91209 1.24725 1.02383 0.97865 0.95914 1.69652 1.53185 1.34600 1.00661 0.86220 0.77714 0.85752 0.76690 1.21710 1.21860 1.20822 1.21681 0.92566 0.99093 0.91365 0.90648 0.90928 0.90911 0.82362 0.82374 0.76989 0.91536 0.89442 0.91493 0.91819 0.94551 0.92701 0.93506 0.78286 0.93558 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.03 36.00 0.36 -0.27 16 2 C -0.15 -1.27 5.89 -104.54 -0.62 -1.89 16 3 C 0.12 1.02 10.85 -17.47 -0.19 0.83 16 4 N -0.48 -5.21 10.35 -12.91 -0.13 -5.35 16 5 C 0.13 1.32 10.71 -17.13 -0.18 1.14 16 6 C -0.17 -2.14 5.89 -104.82 -0.62 -2.75 16 7 C 0.56 8.43 7.78 -12.33 -0.10 8.33 16 8 O -0.53 -10.27 16.42 5.32 0.09 -10.18 16 9 N -0.72 -9.67 5.51 -61.26 -0.34 -10.00 16 10 C 0.12 1.99 5.56 -4.05 -0.02 1.96 16 11 C -0.13 -1.99 4.87 -26.74 -0.13 -2.12 16 12 C 0.17 3.30 2.89 -67.93 -0.20 3.10 16 13 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 14 C -0.16 -2.83 9.49 37.16 0.35 -2.47 16 15 N -0.72 -17.64 4.57 -53.42 -0.24 -17.88 16 16 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.02 -0.23 9.39 -38.87 -0.37 -0.59 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.31 8.09 -51.93 -0.42 -0.12 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.16 1.26 6.42 -52.49 -0.34 0.92 16 30 H 0.40 3.93 6.54 -40.82 -0.27 3.66 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.38 9.97 7.80 -40.82 -0.32 9.66 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.15 1.64 7.74 -52.49 -0.41 1.23 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -33.70 341.28 -7.65 -41.35 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.92 Total: 8.77 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.95 Total: -1.90 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.01 Total: -60.81 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.70 -7.65 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567210836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.369 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds