Wall clock time and date at job start Mon Mar 30 2020 01:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38351 * 120.34767 * 2 1 4 4 N 1.31930 * 121.07796 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.87922 * 359.65635 * 4 3 2 6 6 C 1.39520 * 120.56537 * 0.63158 * 5 4 3 7 7 C 1.47846 * 120.56117 * 179.68080 * 6 5 4 8 8 O 1.21552 * 120.00237 * 179.44956 * 7 6 5 9 9 N 1.34777 * 119.99810 * 359.71860 * 7 6 5 10 10 C 1.46496 * 120.00262 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47473 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47097 * 304.99734 * 12 11 10 14 14 C 1.53001 * 109.47365 * 184.99753 * 12 11 10 15 15 N 1.46504 * 109.46900 * 64.99965 * 12 11 10 16 16 C 1.36942 * 119.99723 * 204.99919 * 15 12 11 17 17 H 1.07999 * 120.00062 * 0.02562 * 16 15 12 18 18 C 1.38809 * 119.99756 * 179.97438 * 16 15 12 19 19 N 1.31616 * 120.00310 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46857 * 90.00222 * 20 18 16 22 22 H 1.48494 * 109.46919 * 210.00316 * 20 18 16 23 23 H 1.48501 * 109.46830 * 330.00193 * 20 18 16 24 24 C 1.38358 * 120.34554 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47567 * 269.98334 * 1 2 3 26 26 H 1.09004 * 109.47088 * 29.97689 * 1 2 3 27 27 H 1.09001 * 109.47392 * 149.97510 * 1 2 3 28 28 H 1.08001 * 119.46352 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.72194 * 180.33045 * 5 4 3 30 30 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.46875 * 300.00167 * 10 9 7 32 32 H 1.08992 * 109.47174 * 59.99739 * 10 9 7 33 33 H 1.09004 * 109.46862 * 299.99801 * 11 10 9 34 34 H 1.09000 * 109.47250 * 59.99778 * 11 10 9 35 35 H 1.09007 * 109.46967 * 60.00116 * 14 12 11 36 36 H 1.09002 * 109.47083 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.46998 * 300.00042 * 14 12 11 38 38 H 0.96993 * 120.00136 * 25.00208 * 15 12 11 39 39 H 0.96997 * 120.00061 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.85941 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1014 0.0057 6 6 3.6053 -1.1436 -0.0002 7 6 4.4022 -2.3889 -0.0003 8 8 3.8432 -3.4683 0.0046 9 7 5.7486 -2.3274 -0.0005 10 6 6.5383 -3.5613 -0.0012 11 6 8.0281 -3.2133 -0.0006 12 6 8.8529 -4.5020 -0.0007 13 1 8.5520 -5.1260 0.8408 14 6 10.3381 -4.1570 0.1255 15 7 8.6248 -5.2276 -1.2529 16 6 8.8093 -6.5836 -1.3017 17 1 9.1225 -7.1182 -0.4171 18 6 8.5927 -7.2712 -2.4880 19 7 8.2106 -6.6198 -3.5659 20 14 8.8437 -9.1211 -2.5545 21 1 7.5705 -9.8058 -2.2148 22 1 9.2675 -9.5142 -3.9223 23 1 9.8924 -9.5137 -1.5792 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6629 2.1275 0.0004 29 1 5.3135 0.1559 0.0104 30 1 6.1947 -1.4661 -0.0002 31 1 6.3015 -4.1447 0.8885 32 1 6.3012 -4.1438 -0.8914 33 1 8.2653 -2.6297 -0.8902 34 1 8.2649 -2.6309 0.8898 35 1 10.5078 -3.6171 1.0571 36 1 10.9257 -5.0751 0.1250 37 1 10.6390 -3.5330 -0.7161 38 1 8.3432 -4.7475 -2.0472 39 1 8.0596 -7.1002 -4.3949 40 1 1.6858 -2.1405 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567210836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:04 Heat of formation + Delta-G solvation = -27.881086 kcal Electronic energy + Delta-G solvation = -20542.143447 eV Core-core repulsion = 17355.608842 eV Total energy + Delta-G solvation = -3186.534605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71571 -40.18021 -38.14572 -35.99835 -34.67324 -34.18030 -33.22416 -31.00557 -29.61425 -28.20357 -26.13774 -25.51986 -23.82475 -23.58938 -21.86288 -21.08151 -19.31544 -18.80472 -17.96168 -17.52872 -16.98646 -16.56013 -16.43244 -15.75295 -15.47526 -15.32537 -15.17962 -14.47454 -14.43693 -14.21594 -14.05927 -13.61116 -13.56429 -13.48119 -13.24126 -12.85248 -12.81880 -12.62310 -12.30118 -12.25723 -12.11060 -11.70560 -11.60207 -11.31292 -10.94170 -10.91437 -10.51726 -10.23790 -9.94660 -8.97556 -7.92494 -5.19190 -0.43360 0.12170 1.45723 1.47813 1.55235 1.74366 2.01978 2.57191 2.76803 3.26752 3.41847 3.62626 3.77508 3.81173 3.89741 3.91612 3.98929 4.16007 4.22290 4.36435 4.49103 4.67332 4.74068 4.76897 4.82314 4.88017 4.96515 5.02428 5.09911 5.15261 5.19762 5.23616 5.36381 5.40558 5.54573 5.57120 5.62635 6.30672 6.42689 6.78537 7.09806 7.36622 8.14794 8.35800 9.31109 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.003271 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.409367 B = 8557.798893 C = 9335.160578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.499 5.499 5 C 0.129 3.871 6 C -0.193 4.193 7 C 0.554 3.446 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.132 3.868 11 C -0.117 4.117 12 C 0.164 3.836 13 H 0.043 0.957 14 C -0.153 4.153 15 N -0.736 5.736 16 C -0.232 4.232 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.292 1.292 22 H -0.297 1.297 23 H -0.268 1.268 24 C -0.038 4.038 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.182 0.818 30 H 0.416 0.584 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 19.702 10.451 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.036 4.036 4 N -0.207 5.207 5 C -0.029 4.029 6 C -0.199 4.199 7 C 0.341 3.659 8 O -0.464 6.464 9 N -0.356 5.356 10 C 0.008 3.992 11 C -0.155 4.155 12 C 0.055 3.945 13 H 0.061 0.939 14 C -0.213 4.213 15 N -0.377 5.377 16 C -0.364 4.364 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.796 3.204 21 H -0.220 1.220 22 H -0.223 1.223 23 H -0.193 1.193 24 C -0.064 4.064 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.211 0.789 29 H 0.198 0.802 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.204 0.796 39 H 0.057 0.943 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.979 19.566 10.531 24.784 hybrid contribution -0.085 -1.907 -0.806 2.072 sum -11.063 17.659 9.725 22.996 Atomic orbital electron populations 1.20828 0.87284 1.04535 1.03959 1.21245 0.99636 0.92694 1.00521 1.23512 0.89567 0.98968 0.91566 1.67790 1.09086 1.30685 1.13101 1.23240 1.01400 0.85972 0.92272 1.20921 0.95443 0.94172 1.09329 1.18531 0.82789 0.88662 0.75885 1.90784 1.72046 1.31739 1.51870 1.45798 1.05267 1.10750 1.73805 1.21180 0.91409 0.85628 1.00948 1.21937 0.91328 0.98106 1.04155 1.20460 0.93806 0.91742 0.88452 0.93865 1.22265 0.97376 1.00401 1.01276 1.42667 1.81591 1.04400 1.08996 1.19601 1.35991 0.85461 0.95359 0.90792 1.25488 1.03667 1.01947 0.95969 1.69805 1.55469 1.35894 1.00996 0.85237 0.77626 0.81031 0.76510 1.21981 1.22344 1.19297 1.21813 0.92544 0.99911 0.92135 0.89407 0.88687 0.91144 0.78899 0.80161 0.74603 0.92642 0.94291 0.90797 0.87405 0.90514 0.94893 0.93603 0.79643 0.94302 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.03 71.23 0.71 -0.27 16 2 C -0.14 -2.18 5.89 -19.81 -0.12 -2.30 16 3 C 0.12 1.78 10.85 84.70 0.92 2.70 16 4 N -0.50 -9.51 10.35 -194.75 -2.01 -11.53 16 5 C 0.13 2.50 10.71 85.02 0.91 3.41 16 6 C -0.19 -4.69 5.89 -19.99 -0.12 -4.81 16 7 C 0.55 17.25 7.78 86.79 0.68 17.92 16 8 O -0.58 -23.98 16.42 -3.88 -0.06 -24.05 16 9 N -0.70 -18.62 5.51 -466.00 -2.57 -21.19 16 10 C 0.13 4.37 5.56 86.38 0.48 4.85 16 11 C -0.12 -3.27 4.87 30.59 0.15 -3.12 16 12 C 0.16 6.03 2.89 44.99 0.13 6.16 16 13 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 14 C -0.15 -4.96 9.49 71.98 0.68 -4.28 16 15 N -0.74 -36.40 4.57 -322.94 -1.48 -37.87 16 16 C -0.23 -12.95 9.93 84.03 0.83 -12.11 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 19 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 20 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 21 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.04 -0.84 9.39 22.73 0.21 -0.62 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.09 0.46 8.09 -2.38 -0.02 0.44 16 27 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.18 2.42 6.42 -2.91 -0.02 2.40 16 30 H 0.42 7.44 6.54 -92.71 -0.61 6.83 16 31 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.04 1.68 7.75 -2.39 -0.02 1.66 16 33 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 39 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.14 3.24 7.74 -2.91 -0.02 3.22 16 Total: -1.00 -76.37 341.28 1.85 -74.52 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.28 Total: 27.68 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.94 Total: 3.39 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -5.78 Total: -131.02 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -76.37 1.85 -74.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567210836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.635 kcal (2) G-P(sol) polarization free energy of solvation -76.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds