Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39838 * 126.45167 * 2 1 4 4 C 1.35451 * 107.86469 * 180.26342 * 3 2 1 5 5 N 1.35536 * 108.86987 * 359.73805 * 4 3 2 6 6 H 0.96995 * 125.67791 * 180.02562 * 5 4 3 7 7 C 1.37652 * 108.64533 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.23461 * 180.02562 * 7 5 4 9 9 O 1.21697 * 119.99608 * 180.02562 * 8 7 5 10 10 N 1.34772 * 119.99990 * 0.02562 * 8 7 5 11 11 C 1.46495 * 119.99981 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47154 * 179.72646 * 11 10 8 13 13 N 1.46504 * 109.47119 * 179.97438 * 12 11 10 14 14 C 1.36932 * 120.00060 * 270.00224 * 13 12 11 15 15 H 1.08000 * 120.00688 * 144.92384 * 14 13 12 16 16 C 1.38821 * 119.99903 * 324.91504 * 14 13 12 17 17 N 1.31619 * 119.99652 * 337.95235 * 16 14 13 18 18 Si 1.86791 * 119.99843 * 157.94992 * 16 14 13 19 19 H 1.48498 * 109.47269 * 60.00720 * 18 16 14 20 20 H 1.48504 * 109.47025 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47533 * 299.99891 * 18 16 14 22 22 C 1.46505 * 119.99969 * 89.99663 * 13 12 11 23 23 C 1.53000 * 117.49574 * 183.23914 * 22 13 12 24 24 C 1.52995 * 117.49875 * 114.57756 * 22 13 12 25 25 H 1.08998 * 109.47230 * 270.18132 * 1 2 3 26 26 H 1.08997 * 109.47896 * 30.18862 * 1 2 3 27 27 H 1.09005 * 109.46959 * 150.18597 * 1 2 3 28 28 H 1.08000 * 126.07256 * 359.97438 * 3 2 1 29 29 H 1.07996 * 125.56759 * 179.72004 * 4 3 2 30 30 H 0.97004 * 120.00120 * 359.72705 * 10 8 7 31 31 H 1.09004 * 109.47193 * 299.72231 * 11 10 8 32 32 H 1.09001 * 109.47390 * 59.72054 * 11 10 8 33 33 H 1.08998 * 109.46971 * 299.99488 * 12 11 10 34 34 H 1.08993 * 109.47254 * 60.00034 * 12 11 10 35 35 H 0.96999 * 119.99583 * 175.76345 * 17 16 14 36 36 H 1.08997 * 115.54740 * 328.90501 * 22 13 12 37 37 H 1.08994 * 117.50248 * 0.02562 * 23 22 13 38 38 H 1.08997 * 117.49351 * 145.02593 * 23 22 13 39 39 H 1.09000 * 117.50255 * 214.98318 * 24 22 13 40 40 H 1.09005 * 117.49469 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1248 0.0000 4 6 3.6217 0.6931 -0.0059 5 7 3.6284 -0.6623 -0.0038 6 1 4.4191 -1.2241 -0.0066 7 6 2.3263 -1.1088 0.0031 8 6 1.8900 -2.5092 0.0079 9 8 0.7028 -2.7766 0.0134 10 7 2.8039 -3.4998 0.0062 11 6 2.3681 -4.8984 0.0105 12 6 3.5936 -5.8144 0.0006 13 7 3.1578 -7.2131 0.0055 14 6 2.9643 -7.8659 1.1936 15 1 2.1744 -8.5966 1.2860 16 6 3.7836 -7.5885 2.2794 17 7 4.9742 -7.0612 2.0875 18 14 3.1963 -7.9635 4.0124 19 1 2.9160 -9.4165 4.1366 20 1 4.2487 -7.5770 4.9862 21 1 1.9571 -7.1946 4.2925 22 6 2.9288 -7.9135 -1.2608 23 6 2.4021 -9.3482 -1.1894 24 6 3.8537 -9.0848 -1.5975 25 1 -0.3633 0.0033 1.0276 26 1 -0.3635 0.8882 -0.5167 27 1 -0.3633 -0.8917 -0.5110 28 1 2.0135 2.1549 -0.0004 29 1 4.4971 1.3255 -0.0117 30 1 3.7502 -3.2866 -0.0021 31 1 1.7770 -5.0921 0.9056 32 1 1.7619 -5.0928 -0.8743 33 1 4.1847 -5.6208 -0.8945 34 1 4.1996 -5.6201 0.8854 35 1 5.5218 -6.8105 2.8479 36 1 2.5838 -7.2912 -2.0864 37 1 2.2254 -9.7708 -0.2003 38 1 1.7109 -9.6698 -1.9684 39 1 4.1170 -9.2334 -2.6448 40 1 4.6328 -9.3340 -0.8770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567441044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = 51.614647 kcal Electronic energy + Delta-G solvation = -21229.431256 eV Core-core repulsion = 18046.343844 eV Total energy + Delta-G solvation = -3183.087411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28443 -38.73308 -37.13026 -34.86713 -33.34826 -32.41241 -30.95541 -29.76613 -27.78248 -26.55474 -24.47206 -22.47583 -21.59811 -21.29537 -20.49764 -19.85476 -19.02927 -18.50678 -16.36720 -15.69501 -15.42961 -15.33866 -15.15289 -14.54467 -14.18102 -13.75498 -13.66283 -13.60612 -12.93090 -12.70033 -12.60239 -12.57025 -12.21236 -11.97472 -11.61414 -11.53124 -11.07736 -10.79852 -10.75484 -10.37078 -10.17445 -9.93014 -9.69142 -9.65701 -9.33077 -8.80304 -8.69307 -8.54291 -8.09697 -6.69770 -5.90481 -3.50647 1.56494 2.72470 3.09541 3.31313 3.37430 3.41526 3.50883 3.61065 4.39038 4.87437 4.95092 5.03018 5.18396 5.23854 5.26771 5.33266 5.75245 5.86044 5.90037 5.94528 6.00019 6.05204 6.13817 6.16819 6.24468 6.39590 6.46236 6.47276 6.57254 6.71043 6.80296 6.92602 6.96834 7.02388 7.17188 7.35223 7.46004 7.71459 7.85622 8.35793 8.50358 9.03221 9.66023 10.20740 11.05990 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.004349 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.299171 B = 6436.505452 C = 7007.110232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.082 4.082 3 C -0.214 4.214 4 C 0.019 3.981 5 N -0.540 5.540 6 H 0.417 0.583 7 C -0.052 4.052 8 C 0.581 3.419 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.100 3.900 12 C 0.136 3.864 13 N -0.547 5.547 14 C -0.259 4.259 15 H 0.069 0.931 16 C 0.012 3.988 17 N -0.885 5.885 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.118 3.882 23 C -0.194 4.194 24 C -0.220 4.220 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.390 0.610 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.105 0.895 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 13.052 -5.353 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.238 4.238 4 C -0.117 4.117 5 N -0.136 5.136 6 H 0.254 0.746 7 C -0.165 4.165 8 C 0.367 3.633 9 O -0.409 6.409 10 N -0.371 5.371 11 C -0.025 4.025 12 C 0.009 3.991 13 N -0.263 5.263 14 C -0.388 4.388 15 H 0.086 0.914 16 C -0.188 4.188 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.010 3.990 23 C -0.232 4.232 24 C -0.261 4.261 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.158 0.842 29 H 0.186 0.814 30 H 0.223 0.777 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.029 12.666 -5.201 13.731 hybrid contribution 0.824 -0.301 0.932 1.280 sum -0.205 12.365 -4.269 13.083 Atomic orbital electron populations 1.20322 0.89440 1.02702 1.02123 1.19938 0.95871 0.90807 1.02426 1.20768 0.91897 0.98652 1.12531 1.21953 0.99453 0.83045 1.07258 1.41994 1.07344 1.07262 1.56998 0.74562 1.20459 0.83596 0.93994 1.18417 1.17091 0.86146 0.82920 0.77103 1.90793 1.16064 1.83264 1.50826 1.45996 1.08848 1.07548 1.74702 1.22352 1.00776 0.77739 1.01600 1.21100 0.92774 0.82696 1.02544 1.43206 1.77247 1.05823 1.00066 1.19077 1.10056 1.22003 0.87690 0.91386 1.25117 0.93845 1.00614 0.99268 1.70028 1.07477 1.45114 1.30135 0.86448 0.78146 0.78587 0.84189 1.20522 1.21555 1.20688 1.21239 1.00524 0.87041 0.90244 1.23039 0.96473 1.01563 1.02173 1.23358 0.93783 1.09347 0.99573 0.91685 0.92294 0.90103 0.84201 0.81393 0.77743 0.91354 0.92929 0.95104 0.87720 0.93484 0.89460 0.88399 0.90645 0.91164 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.83 36.01 0.35 -0.82 16 2 C -0.08 -1.14 6.21 -104.16 -0.65 -1.79 16 3 C -0.21 -2.39 10.76 -39.98 -0.43 -2.82 16 4 C 0.02 0.18 11.89 -16.91 -0.20 -0.02 16 5 N -0.54 -5.86 5.99 -9.39 -0.06 -5.91 16 6 H 0.42 3.44 8.19 -40.82 -0.33 3.11 16 7 C -0.05 -0.76 7.06 -81.98 -0.58 -1.33 16 8 C 0.58 10.19 7.79 -12.85 -0.10 10.09 16 9 O -0.53 -11.05 14.80 5.19 0.08 -10.98 16 10 N -0.72 -11.98 5.55 -61.62 -0.34 -12.32 16 11 C 0.10 2.00 6.00 -4.04 -0.02 1.97 16 12 C 0.14 2.93 5.45 -4.04 -0.02 2.91 16 13 N -0.55 -12.97 2.78 -165.66 -0.46 -13.43 16 14 C -0.26 -6.76 8.63 -15.06 -0.13 -6.89 16 15 H 0.07 1.79 6.55 -52.49 -0.34 1.45 16 16 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 17 N -0.89 -23.99 11.33 55.49 0.63 -23.36 16 18 Si 0.90 21.10 29.61 -169.99 -5.03 16.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.12 2.47 6.56 -67.93 -0.45 2.03 16 23 C -0.19 -3.78 9.80 -26.69 -0.26 -4.04 16 24 C -0.22 -4.37 10.36 -26.69 -0.28 -4.65 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.23 6.49 -51.93 -0.34 0.89 16 28 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.39 5.35 7.60 -40.82 -0.31 5.04 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.11 2.52 5.35 -51.93 -0.28 2.24 16 35 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -30.80 334.87 -8.71 -39.51 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.72 Total: 10.53 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.85 Total: -5.15 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.23 Total: -55.03 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.80 -8.71 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567441044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.122 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds