Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39838 * 126.45167 * 2 1 4 4 C 1.35451 * 107.86469 * 180.26342 * 3 2 1 5 5 N 1.35536 * 108.86987 * 359.73805 * 4 3 2 6 6 H 0.96995 * 125.67791 * 180.02562 * 5 4 3 7 7 C 1.37652 * 108.64533 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.23461 * 180.02562 * 7 5 4 9 9 O 1.21697 * 119.99608 * 180.02562 * 8 7 5 10 10 N 1.34772 * 119.99990 * 0.02562 * 8 7 5 11 11 C 1.46495 * 119.99981 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47154 * 179.72646 * 11 10 8 13 13 N 1.46504 * 109.47119 * 179.97438 * 12 11 10 14 14 C 1.36932 * 120.00060 * 270.00224 * 13 12 11 15 15 H 1.08000 * 120.00688 * 144.92384 * 14 13 12 16 16 C 1.38821 * 119.99903 * 324.91504 * 14 13 12 17 17 N 1.31619 * 119.99652 * 337.95235 * 16 14 13 18 18 Si 1.86791 * 119.99843 * 157.94992 * 16 14 13 19 19 H 1.48498 * 109.47269 * 60.00720 * 18 16 14 20 20 H 1.48504 * 109.47025 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47533 * 299.99891 * 18 16 14 22 22 C 1.46505 * 119.99969 * 89.99663 * 13 12 11 23 23 C 1.53000 * 117.49574 * 183.23914 * 22 13 12 24 24 C 1.52995 * 117.49875 * 114.57756 * 22 13 12 25 25 H 1.08998 * 109.47230 * 270.18132 * 1 2 3 26 26 H 1.08997 * 109.47896 * 30.18862 * 1 2 3 27 27 H 1.09005 * 109.46959 * 150.18597 * 1 2 3 28 28 H 1.08000 * 126.07256 * 359.97438 * 3 2 1 29 29 H 1.07996 * 125.56759 * 179.72004 * 4 3 2 30 30 H 0.97004 * 120.00120 * 359.72705 * 10 8 7 31 31 H 1.09004 * 109.47193 * 299.72231 * 11 10 8 32 32 H 1.09001 * 109.47390 * 59.72054 * 11 10 8 33 33 H 1.08998 * 109.46971 * 299.99488 * 12 11 10 34 34 H 1.08993 * 109.47254 * 60.00034 * 12 11 10 35 35 H 0.96999 * 119.99583 * 175.76345 * 17 16 14 36 36 H 1.08997 * 115.54740 * 328.90501 * 22 13 12 37 37 H 1.08994 * 117.50248 * 0.02562 * 23 22 13 38 38 H 1.08997 * 117.49351 * 145.02593 * 23 22 13 39 39 H 1.09000 * 117.50255 * 214.98318 * 24 22 13 40 40 H 1.09005 * 117.49469 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1248 0.0000 4 6 3.6217 0.6931 -0.0059 5 7 3.6284 -0.6623 -0.0038 6 1 4.4191 -1.2241 -0.0066 7 6 2.3263 -1.1088 0.0031 8 6 1.8900 -2.5092 0.0079 9 8 0.7028 -2.7766 0.0134 10 7 2.8039 -3.4998 0.0062 11 6 2.3681 -4.8984 0.0105 12 6 3.5936 -5.8144 0.0006 13 7 3.1578 -7.2131 0.0055 14 6 2.9643 -7.8659 1.1936 15 1 2.1744 -8.5966 1.2860 16 6 3.7836 -7.5885 2.2794 17 7 4.9742 -7.0612 2.0875 18 14 3.1963 -7.9635 4.0124 19 1 2.9160 -9.4165 4.1366 20 1 4.2487 -7.5770 4.9862 21 1 1.9571 -7.1946 4.2925 22 6 2.9288 -7.9135 -1.2608 23 6 2.4021 -9.3482 -1.1894 24 6 3.8537 -9.0848 -1.5975 25 1 -0.3633 0.0033 1.0276 26 1 -0.3635 0.8882 -0.5167 27 1 -0.3633 -0.8917 -0.5110 28 1 2.0135 2.1549 -0.0004 29 1 4.4971 1.3255 -0.0117 30 1 3.7502 -3.2866 -0.0021 31 1 1.7770 -5.0921 0.9056 32 1 1.7619 -5.0928 -0.8743 33 1 4.1847 -5.6208 -0.8945 34 1 4.1996 -5.6201 0.8854 35 1 5.5218 -6.8105 2.8479 36 1 2.5838 -7.2912 -2.0864 37 1 2.2254 -9.7708 -0.2003 38 1 1.7109 -9.6698 -1.9684 39 1 4.1170 -9.2334 -2.6448 40 1 4.6328 -9.3340 -0.8770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567441044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = 31.981755 kcal Electronic energy + Delta-G solvation = -21230.282602 eV Core-core repulsion = 18046.343844 eV Total energy + Delta-G solvation = -3183.938758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25558 -40.10505 -38.83081 -36.40734 -35.06977 -33.46778 -32.72167 -30.90760 -29.27379 -27.73396 -26.28346 -23.91504 -23.04877 -22.78004 -21.60697 -21.51527 -20.23839 -19.54976 -18.19260 -17.35191 -16.99668 -16.59742 -16.54044 -16.17602 -15.78381 -15.14478 -14.86745 -14.61713 -14.43518 -14.22671 -13.83964 -13.79304 -13.59270 -13.30072 -13.16244 -12.94958 -12.66621 -12.53954 -12.51365 -12.16273 -11.94485 -11.71999 -11.40760 -11.09635 -10.91456 -10.52468 -10.17560 -9.68449 -9.10007 -8.60972 -7.87627 -5.51205 0.48038 1.41621 1.45228 1.51026 1.85817 2.08183 2.28190 2.35391 2.47516 3.10748 3.37904 3.52718 3.92443 4.25118 4.27549 4.27841 4.32387 4.35379 4.43004 4.49984 4.58843 4.75718 4.88829 4.88980 4.92888 5.01379 5.02105 5.15658 5.18806 5.28061 5.39815 5.48628 5.52749 5.62720 5.71021 5.80116 5.99963 6.38718 6.50802 6.64419 7.07923 7.17077 7.77126 8.26374 9.04373 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.004349 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.299171 B = 6436.505452 C = 7007.110232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.094 4.094 3 C -0.229 4.229 4 C 0.050 3.950 5 N -0.531 5.531 6 H 0.429 0.571 7 C -0.091 4.091 8 C 0.578 3.422 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.123 3.877 12 C 0.144 3.856 13 N -0.564 5.564 14 C -0.265 4.265 15 H 0.059 0.941 16 C -0.029 4.029 17 N -0.907 5.907 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.097 3.903 23 C -0.184 4.184 24 C -0.210 4.210 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.165 0.835 29 H 0.216 0.784 30 H 0.405 0.595 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 14.784 -6.331 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.253 4.253 4 C -0.087 4.087 5 N -0.128 5.128 6 H 0.268 0.732 7 C -0.203 4.203 8 C 0.367 3.633 9 O -0.456 6.456 10 N -0.364 5.364 11 C -0.003 4.003 12 C 0.017 3.983 13 N -0.282 5.282 14 C -0.395 4.395 15 H 0.077 0.923 16 C -0.227 4.227 17 N -0.551 5.551 18 Si 0.776 3.224 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.011 4.011 23 C -0.222 4.222 24 C -0.251 4.251 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.182 0.818 29 H 0.233 0.767 30 H 0.240 0.760 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.084 14.385 -6.194 15.662 hybrid contribution 0.550 -0.758 1.177 1.504 sum 0.466 13.628 -5.017 14.529 Atomic orbital electron populations 1.20300 0.89751 1.02556 1.01920 1.20292 0.96268 0.91873 1.01892 1.21113 0.92086 0.99021 1.13037 1.22757 1.00561 0.82440 1.02950 1.42011 1.06414 1.08147 1.56258 0.73181 1.20025 0.85636 0.92301 1.22365 1.17529 0.85552 0.84195 0.75977 1.90760 1.17794 1.84164 1.52879 1.45774 1.09740 1.06172 1.74697 1.21835 0.99474 0.79405 0.99607 1.20959 0.92964 0.82263 1.02078 1.43398 1.77535 1.06746 1.00515 1.19197 1.09510 1.21680 0.89076 0.92300 1.25648 0.94078 1.01257 1.01712 1.70112 1.08099 1.46345 1.30511 0.85658 0.77286 0.78346 0.81121 1.20099 1.21438 1.21310 1.21542 1.01797 0.87906 0.89831 1.23051 0.96935 1.00152 1.02082 1.23261 0.92999 1.08273 1.00530 0.91940 0.89764 0.92818 0.81788 0.76700 0.75957 0.94921 0.93314 0.93506 0.89989 0.93748 0.87156 0.90713 0.87189 0.87823 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.33 9.83 71.24 0.70 -1.63 16 2 C -0.09 -2.52 6.21 -19.56 -0.12 -2.65 16 3 C -0.23 -4.39 10.76 22.01 0.24 -4.16 16 4 C 0.05 0.74 11.89 83.48 0.99 1.74 16 5 N -0.53 -10.21 5.99 -183.62 -1.10 -11.31 16 6 H 0.43 5.99 8.19 -92.71 -0.76 5.23 16 7 C -0.09 -2.60 7.06 40.35 0.28 -2.32 16 8 C 0.58 20.76 7.79 86.45 0.67 21.43 16 9 O -0.58 -25.04 14.80 -4.34 -0.06 -25.11 16 10 N -0.71 -24.03 5.55 -467.08 -2.59 -26.63 16 11 C 0.12 5.03 6.00 86.38 0.52 5.55 16 12 C 0.14 6.29 5.45 86.38 0.47 6.76 16 13 N -0.56 -27.06 2.78 -678.03 -1.88 -28.95 16 14 C -0.26 -14.09 8.63 84.04 0.73 -13.36 16 15 H 0.06 3.18 6.55 -2.91 -0.02 3.16 16 16 C -0.03 -1.56 4.96 84.86 0.42 -1.14 16 17 N -0.91 -49.98 11.33 21.65 0.25 -49.74 16 18 Si 0.95 44.17 29.61 68.60 2.03 46.21 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 C 0.10 3.97 6.56 44.99 0.30 4.26 16 23 C -0.18 -6.93 9.80 30.62 0.30 -6.63 16 24 C -0.21 -8.08 10.36 30.62 0.32 -7.77 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.70 6.49 -2.38 -0.02 1.69 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 29 H 0.22 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.41 10.99 7.60 -92.71 -0.70 10.28 16 31 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 34 H 0.08 4.03 5.35 -2.39 -0.01 4.02 16 35 H 0.25 13.52 8.32 -92.71 -0.77 12.75 16 36 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 37 H 0.07 3.17 6.37 -2.39 -0.02 3.16 16 38 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.06 2.64 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -69.16 334.87 2.05 -67.11 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.40 Total: 28.31 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.81 Total: 0.10 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -5.33 Total: -116.62 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.21 kcal Total: -69.16 2.05 -67.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567441044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.092 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds