Wall clock time and date at job start Mon Mar 30 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38355 * 120.34491 * 2 1 4 4 N 1.31929 * 121.07713 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87889 * 359.68229 * 4 3 2 6 6 C 1.39522 * 120.56669 * 0.58429 * 5 4 3 7 7 C 1.47841 * 120.55648 * 179.72904 * 6 5 4 8 8 O 1.21556 * 119.99523 * 179.71466 * 7 6 5 9 9 N 1.34773 * 120.00591 * 359.72438 * 7 6 5 10 10 C 1.46490 * 120.00384 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47559 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46613 * 54.99525 * 11 10 9 13 13 C 1.53001 * 109.47108 * 295.00069 * 11 10 9 14 14 C 1.52996 * 109.47530 * 174.99686 * 11 10 9 15 15 N 1.46498 * 109.47059 * 184.99929 * 14 11 10 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 11 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47166 * 329.99846 * 20 18 16 24 24 C 1.38351 * 120.34935 * 180.02562 * 2 1 3 25 25 H 1.09010 * 109.46994 * 269.97518 * 1 2 3 26 26 H 1.08998 * 109.47478 * 29.97417 * 1 2 3 27 27 H 1.09004 * 109.47560 * 149.97841 * 1 2 3 28 28 H 1.07998 * 119.46454 * 0.02888 * 3 2 1 29 29 H 1.08009 * 119.71586 * 180.28820 * 5 4 3 30 30 H 0.97002 * 119.99300 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47374 * 59.99359 * 10 9 7 32 32 H 1.09002 * 109.47263 * 299.99603 * 10 9 7 33 33 H 1.09001 * 109.46786 * 59.99727 * 13 11 10 34 34 H 1.09001 * 109.47309 * 179.97438 * 13 11 10 35 35 H 1.08995 * 109.46988 * 299.99895 * 13 11 10 36 36 H 1.09004 * 109.47066 * 65.00196 * 14 11 10 37 37 H 1.08994 * 109.46974 * 305.00344 * 14 11 10 38 38 H 0.97001 * 120.00384 * 0.02562 * 15 14 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.85510 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1940 0.0000 4 7 3.5251 1.2109 -0.0005 5 6 4.2348 0.1016 0.0052 6 6 3.6053 -1.1436 -0.0003 7 6 4.4024 -2.3887 0.0001 8 8 3.8433 -3.4681 0.0006 9 7 5.7487 -2.3272 0.0001 10 6 6.5384 -3.5610 -0.0001 11 6 8.0283 -3.2130 -0.0007 12 1 8.2483 -2.5562 0.8410 13 6 8.3858 -2.5035 -1.3083 14 6 8.8519 -4.4963 0.1248 15 7 10.2717 -4.1556 0.2443 16 6 11.2055 -5.1488 0.3748 17 1 10.8956 -6.1833 0.3852 18 6 12.5502 -4.8258 0.4938 19 7 12.9277 -3.5649 0.4817 20 14 13.8240 -6.1805 0.6712 21 1 14.2979 -6.5937 -0.6742 22 1 14.9724 -5.6789 1.4679 23 1 13.2145 -7.3458 1.3609 24 6 2.2060 -1.1939 -0.0005 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6628 2.1275 0.0005 29 1 5.3136 0.1561 0.0093 30 1 6.1947 -1.4658 -0.0005 31 1 6.3014 -4.1440 -0.8901 32 1 6.3016 -4.1442 0.8898 33 1 7.7991 -1.5892 -1.3977 34 1 9.4472 -2.2552 -1.3086 35 1 8.1657 -3.1602 -2.1499 36 1 8.6997 -5.1138 -0.7605 37 1 8.5344 -5.0465 1.0105 38 1 10.5500 -3.2264 0.2353 39 1 13.8675 -3.3392 0.5644 40 1 1.6858 -2.1403 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568164962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:34 Heat of formation + Delta-G solvation = -4.559588 kcal Electronic energy + Delta-G solvation = -20353.378078 eV Core-core repulsion = 17167.854769 eV Total energy + Delta-G solvation = -3185.523309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94296 -39.30262 -36.87363 -34.59029 -33.98789 -32.87491 -32.06239 -30.02724 -27.77457 -26.74868 -25.65019 -24.15814 -23.10418 -22.33967 -20.67759 -19.88787 -18.06940 -17.24973 -17.09955 -16.67709 -15.75490 -15.55728 -14.88699 -14.68627 -14.38775 -14.18013 -13.75001 -13.62661 -13.43971 -13.17745 -13.02383 -13.00961 -12.64822 -12.37457 -12.28772 -12.07518 -11.08064 -10.93183 -10.74032 -10.62862 -10.50529 -10.35311 -10.15566 -10.03525 -9.75312 -9.66391 -9.41065 -9.10608 -8.88369 -6.93143 -5.77670 -3.06163 0.29670 0.80859 2.64077 2.96993 3.43699 3.48982 3.50566 3.50724 3.91868 4.29013 4.41888 4.49195 4.55188 4.58743 4.74730 4.96125 5.11695 5.13640 5.18304 5.25308 5.35329 5.51091 5.57039 5.65371 5.76186 5.78149 5.93320 5.94676 6.07669 6.16802 6.20772 6.35139 6.40695 6.63487 6.75160 6.84456 7.32878 7.47219 7.69952 8.01466 8.41495 9.52753 10.09809 10.44529 11.45318 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047354 B = 0.002627 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.152231 B =10654.494704 C =11086.137581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.118 3.882 4 N -0.482 5.482 5 C 0.128 3.872 6 C -0.179 4.179 7 C 0.560 3.440 8 O -0.536 6.536 9 N -0.717 5.717 10 C 0.126 3.874 11 C -0.111 4.111 12 H 0.077 0.923 13 C -0.142 4.142 14 C 0.161 3.839 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.020 4.020 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.089 10.008 -1.755 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.039 4.039 4 N -0.190 5.190 5 C -0.031 4.031 6 C -0.184 4.184 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.368 5.368 10 C 0.003 3.997 11 C -0.131 4.131 12 H 0.096 0.904 13 C -0.200 4.200 14 C 0.033 3.967 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.046 4.046 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.236 0.764 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.939 9.850 -1.741 25.945 hybrid contribution 0.757 -0.781 0.112 1.093 sum -23.182 9.070 -1.628 24.946 Atomic orbital electron populations 1.20743 0.89559 1.03488 1.02952 1.20957 0.98074 0.93747 1.02028 1.22927 0.89936 0.97724 0.93297 1.67710 1.08051 1.30933 1.12290 1.23009 1.00386 0.86820 0.92860 1.21067 0.95229 0.94914 1.07206 1.18010 0.82269 0.88306 0.76857 1.90786 1.71152 1.29618 1.49878 1.45988 1.05647 1.10797 1.74400 1.21486 0.90123 0.85421 1.02686 1.21572 0.92452 0.99773 0.99264 0.90417 1.21803 1.02616 0.98969 0.96583 1.20568 0.85488 0.92627 0.98060 1.42338 0.99785 1.06830 1.88592 1.19236 0.87274 0.88579 1.41906 0.91147 1.24743 0.97100 0.96232 1.02993 1.69657 1.15624 1.15455 1.57570 0.86173 0.81414 0.80981 0.77531 1.21722 1.21785 1.20756 1.21648 0.92472 0.99055 0.91450 0.90591 0.90882 0.90962 0.82274 0.82309 0.76414 0.91027 0.91021 0.93950 0.91023 0.92734 0.95949 0.96091 0.78190 0.93519 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.03 36.00 0.36 -0.14 16 2 C -0.15 -1.11 5.89 -104.54 -0.62 -1.72 16 3 C 0.12 0.94 10.85 -17.47 -0.19 0.75 16 4 N -0.48 -4.87 10.35 -12.91 -0.13 -5.00 16 5 C 0.13 1.24 10.71 -17.13 -0.18 1.05 16 6 C -0.18 -1.91 5.89 -104.82 -0.62 -2.53 16 7 C 0.56 7.20 7.78 -12.33 -0.10 7.10 16 8 O -0.54 -8.69 16.42 5.32 0.09 -8.60 16 9 N -0.72 -8.29 5.24 -61.26 -0.32 -8.61 16 10 C 0.13 1.69 5.06 -4.05 -0.02 1.67 16 11 C -0.11 -1.67 2.46 -90.62 -0.22 -1.90 16 12 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 13 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 14 C 0.16 3.15 5.65 -4.04 -0.02 3.12 16 15 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 16 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.02 -0.19 9.39 -38.87 -0.37 -0.55 16 25 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 26 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.16 1.20 6.42 -52.48 -0.34 0.86 16 30 H 0.40 3.72 5.72 -40.82 -0.23 3.48 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 34 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.15 1.35 7.74 -52.49 -0.41 0.94 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -33.45 337.90 -7.55 -41.00 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.77 Total: 6.77 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.89 Total: -2.20 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.05 Total: -59.46 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.45 -7.55 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568164962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.442 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds