Wall clock time and date at job start Mon Mar 30 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38355 * 120.34491 * 2 1 4 4 N 1.31929 * 121.07713 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87889 * 359.68229 * 4 3 2 6 6 C 1.39522 * 120.56669 * 0.58429 * 5 4 3 7 7 C 1.47841 * 120.55648 * 179.72904 * 6 5 4 8 8 O 1.21556 * 119.99523 * 179.71466 * 7 6 5 9 9 N 1.34773 * 120.00591 * 359.72438 * 7 6 5 10 10 C 1.46490 * 120.00384 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47559 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46613 * 54.99525 * 11 10 9 13 13 C 1.53001 * 109.47108 * 295.00069 * 11 10 9 14 14 C 1.52996 * 109.47530 * 174.99686 * 11 10 9 15 15 N 1.46498 * 109.47059 * 184.99929 * 14 11 10 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 11 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47166 * 329.99846 * 20 18 16 24 24 C 1.38351 * 120.34935 * 180.02562 * 2 1 3 25 25 H 1.09010 * 109.46994 * 269.97518 * 1 2 3 26 26 H 1.08998 * 109.47478 * 29.97417 * 1 2 3 27 27 H 1.09004 * 109.47560 * 149.97841 * 1 2 3 28 28 H 1.07998 * 119.46454 * 0.02888 * 3 2 1 29 29 H 1.08009 * 119.71586 * 180.28820 * 5 4 3 30 30 H 0.97002 * 119.99300 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47374 * 59.99359 * 10 9 7 32 32 H 1.09002 * 109.47263 * 299.99603 * 10 9 7 33 33 H 1.09001 * 109.46786 * 59.99727 * 13 11 10 34 34 H 1.09001 * 109.47309 * 179.97438 * 13 11 10 35 35 H 1.08995 * 109.46988 * 299.99895 * 13 11 10 36 36 H 1.09004 * 109.47066 * 65.00196 * 14 11 10 37 37 H 1.08994 * 109.46974 * 305.00344 * 14 11 10 38 38 H 0.97001 * 120.00384 * 0.02562 * 15 14 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.85510 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1940 0.0000 4 7 3.5251 1.2109 -0.0005 5 6 4.2348 0.1016 0.0052 6 6 3.6053 -1.1436 -0.0003 7 6 4.4024 -2.3887 0.0001 8 8 3.8433 -3.4681 0.0006 9 7 5.7487 -2.3272 0.0001 10 6 6.5384 -3.5610 -0.0001 11 6 8.0283 -3.2130 -0.0007 12 1 8.2483 -2.5562 0.8410 13 6 8.3858 -2.5035 -1.3083 14 6 8.8519 -4.4963 0.1248 15 7 10.2717 -4.1556 0.2443 16 6 11.2055 -5.1488 0.3748 17 1 10.8956 -6.1833 0.3852 18 6 12.5502 -4.8258 0.4938 19 7 12.9277 -3.5649 0.4817 20 14 13.8240 -6.1805 0.6712 21 1 14.2979 -6.5937 -0.6742 22 1 14.9724 -5.6789 1.4679 23 1 13.2145 -7.3458 1.3609 24 6 2.2060 -1.1939 -0.0005 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6628 2.1275 0.0005 29 1 5.3136 0.1561 0.0093 30 1 6.1947 -1.4658 -0.0005 31 1 6.3014 -4.1440 -0.8901 32 1 6.3016 -4.1442 0.8898 33 1 7.7991 -1.5892 -1.3977 34 1 9.4472 -2.2552 -1.3086 35 1 8.1657 -3.1602 -2.1499 36 1 8.6997 -5.1138 -0.7605 37 1 8.5344 -5.0465 1.0105 38 1 10.5500 -3.2264 0.2353 39 1 13.8675 -3.3392 0.5644 40 1 1.6858 -2.1403 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568164962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:34 Heat of formation + Delta-G solvation = -27.540741 kcal Electronic energy + Delta-G solvation = -20354.374616 eV Core-core repulsion = 17167.854769 eV Total energy + Delta-G solvation = -3186.519847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72975 -40.24158 -38.24559 -36.06070 -34.74825 -34.19273 -33.12623 -31.78184 -28.34139 -27.83239 -27.26439 -25.35020 -24.02606 -23.72747 -21.70484 -21.14491 -19.32535 -18.66732 -17.99848 -17.55862 -16.89812 -16.64021 -16.40043 -15.80847 -15.52908 -15.43901 -15.07135 -14.83736 -14.36613 -14.20613 -14.06991 -13.69662 -13.58349 -13.55597 -13.45481 -12.96469 -12.82052 -12.79876 -12.20847 -12.17529 -12.00201 -11.75914 -11.66746 -11.35520 -10.94236 -10.90545 -10.50386 -10.24300 -9.94670 -8.99188 -7.95446 -5.23622 -0.43120 0.13648 1.47846 1.49172 1.57674 1.74236 1.99066 2.56645 2.77219 3.26763 3.38328 3.62815 3.70044 3.78354 3.81294 3.90862 3.95374 4.06805 4.17687 4.33701 4.48512 4.54010 4.69401 4.74075 4.77580 4.83618 4.93317 4.96031 5.03368 5.12448 5.16469 5.23174 5.26187 5.37340 5.46896 5.50278 5.58030 6.27338 6.38736 6.80065 7.04780 7.34223 8.09543 8.33598 9.28007 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047354 B = 0.002627 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.152231 B =10654.494704 C =11086.137581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.118 3.882 4 N -0.503 5.503 5 C 0.125 3.875 6 C -0.194 4.194 7 C 0.562 3.438 8 O -0.576 6.576 9 N -0.707 5.707 10 C 0.138 3.862 11 C -0.095 4.095 12 H 0.080 0.920 13 C -0.137 4.137 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.973 3.027 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.271 1.271 24 C -0.033 4.033 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.191 0.809 29 H 0.175 0.825 30 H 0.413 0.587 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.377 0.623 39 H 0.252 0.748 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.632 10.849 -1.847 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.038 4.038 4 N -0.211 5.211 5 C -0.033 4.033 6 C -0.199 4.199 7 C 0.349 3.651 8 O -0.457 6.457 9 N -0.358 5.358 10 C 0.014 3.986 11 C -0.114 4.114 12 H 0.098 0.902 13 C -0.194 4.194 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.196 1.196 24 C -0.059 4.059 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.208 0.792 29 H 0.192 0.808 30 H 0.251 0.749 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.506 10.697 -1.836 27.719 hybrid contribution 1.108 -1.006 0.135 1.503 sum -24.397 9.691 -1.701 26.307 Atomic orbital electron populations 1.20829 0.87251 1.04618 1.03908 1.21250 0.99636 0.92761 1.00461 1.23497 0.89508 0.99116 0.91704 1.67774 1.09202 1.30964 1.13124 1.23217 1.01233 0.86337 0.92474 1.20926 0.95557 0.94167 1.09300 1.18328 0.82378 0.88567 0.75808 1.90762 1.71860 1.31185 1.51884 1.45822 1.05369 1.10765 1.73889 1.21212 0.89017 0.86102 1.02311 1.21348 0.92684 0.97560 0.99834 0.90162 1.21744 1.01346 1.00360 0.95996 1.20722 0.83570 0.94997 0.97753 1.42512 1.01556 1.05980 1.88448 1.19627 0.88159 0.89397 1.40591 0.90830 1.25549 0.99108 0.98394 1.03699 1.69804 1.15631 1.17266 1.59156 0.85147 0.78675 0.78606 0.77376 1.21402 1.22115 1.19594 1.21812 0.92323 0.99920 0.91856 0.89574 0.88908 0.90734 0.79248 0.80765 0.74914 0.91327 0.91650 0.90640 0.93752 0.92855 0.95958 0.96154 0.79062 0.93967 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.03 71.23 0.71 0.01 16 2 C -0.14 -1.82 5.89 -19.81 -0.12 -1.94 16 3 C 0.12 1.59 10.85 84.71 0.92 2.51 16 4 N -0.50 -9.18 10.35 -194.75 -2.01 -11.20 16 5 C 0.13 2.25 10.71 85.02 0.91 3.16 16 6 C -0.19 -3.99 5.89 -19.99 -0.12 -4.11 16 7 C 0.56 14.17 7.78 86.79 0.68 14.85 16 8 O -0.58 -18.78 16.42 -3.89 -0.06 -18.85 16 9 N -0.71 -15.55 5.24 -465.99 -2.44 -18.00 16 10 C 0.14 3.59 5.06 86.38 0.44 4.02 16 11 C -0.10 -2.79 2.46 -10.79 -0.03 -2.82 16 12 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 13 C -0.14 -3.82 8.94 71.98 0.64 -3.18 16 14 C 0.16 6.11 5.65 86.38 0.49 6.60 16 15 N -0.74 -37.18 5.33 -343.46 -1.83 -39.01 16 16 C -0.25 -13.76 9.99 84.03 0.84 -12.93 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 19 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 20 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 C -0.03 -0.60 9.39 22.73 0.21 -0.38 16 25 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.09 0.26 8.09 -2.39 -0.02 0.24 16 27 H 0.07 0.48 8.09 -2.38 -0.02 0.46 16 28 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 29 H 0.18 2.32 6.42 -2.91 -0.02 2.30 16 30 H 0.41 6.93 5.72 -92.71 -0.53 6.40 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.58 7.18 -2.39 -0.02 1.57 16 34 H 0.04 1.49 7.18 -2.39 -0.02 1.48 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.38 19.78 6.85 -92.71 -0.64 19.15 16 39 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.14 2.63 7.74 -2.91 -0.02 2.61 16 Total: -1.00 -71.95 337.90 1.90 -70.06 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.11 Total: 25.36 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.05 Total: 1.95 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -6.00 Total: -126.79 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.06 Total: -18.85 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.95 1.90 -70.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568164962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.516 kcal (2) G-P(sol) polarization free energy of solvation -71.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds