Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 120.35162 * 2 1 4 4 N 1.31925 * 121.08191 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.87714 * 359.97438 * 4 3 2 6 6 C 1.39516 * 120.57169 * 359.97438 * 5 4 3 7 7 C 1.47832 * 120.56289 * 180.02562 * 6 5 4 8 8 O 1.21562 * 120.00203 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99990 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00173 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47330 * 304.99971 * 11 10 9 13 13 C 1.52999 * 109.47021 * 65.00228 * 11 10 9 14 14 C 1.52999 * 109.47033 * 185.00065 * 11 10 9 15 15 N 1.46508 * 109.46959 * 175.00080 * 14 11 10 16 16 C 1.36934 * 119.99964 * 179.97438 * 15 14 11 17 17 H 1.08005 * 120.00234 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00065 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46803 * 60.00225 * 20 18 16 22 22 H 1.48498 * 109.47238 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47349 * 300.00433 * 20 18 16 24 24 C 1.38355 * 120.34505 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47166 * 269.97648 * 1 2 3 26 26 H 1.09003 * 109.46896 * 29.98001 * 1 2 3 27 27 H 1.08999 * 109.47210 * 149.97076 * 1 2 3 28 28 H 1.08006 * 119.45847 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.71431 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99874 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47384 * 299.99883 * 10 9 7 32 32 H 1.09008 * 109.46921 * 59.99591 * 10 9 7 33 33 H 1.09006 * 109.47092 * 300.00301 * 13 11 10 34 34 H 1.09002 * 109.47278 * 59.99711 * 13 11 10 35 35 H 1.08997 * 109.47062 * 179.97438 * 13 11 10 36 36 H 1.08995 * 109.47280 * 295.00015 * 14 11 10 37 37 H 1.09003 * 109.47458 * 55.00133 * 14 11 10 38 38 H 0.97001 * 119.99720 * 0.02562 * 15 14 11 39 39 H 0.96998 * 120.00179 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.86093 * 359.70613 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1013 -0.0005 6 6 3.6054 -1.1438 0.0005 7 6 4.4022 -2.3890 0.0011 8 8 3.8431 -3.4684 0.0025 9 7 5.7486 -2.3274 0.0011 10 6 6.5383 -3.5614 0.0022 11 6 8.0282 -3.2134 0.0013 12 1 8.2477 -2.5577 -0.8413 13 6 8.3866 -2.5024 1.3077 14 6 8.8515 -4.4969 -0.1233 15 7 10.2714 -4.1565 -0.2442 16 6 11.2055 -5.1500 -0.3680 17 1 10.8957 -6.1846 -0.3770 18 6 12.5507 -4.8274 -0.4831 19 7 12.9283 -3.5667 -0.4728 20 14 13.8252 -6.1828 -0.6513 21 1 13.5418 -6.9800 -1.8717 22 1 15.1781 -5.5797 -0.7565 23 1 13.7688 -7.0661 0.5411 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 1.6629 2.1274 0.0004 29 1 5.3135 0.1558 -0.0014 30 1 6.1947 -1.4661 0.0003 31 1 6.3014 -4.1436 0.8926 32 1 6.3013 -4.1452 -0.8874 33 1 7.7999 -1.5880 1.3966 34 1 8.1671 -3.1581 2.1504 35 1 9.4481 -2.2549 1.3073 36 1 8.6999 -5.1133 0.7627 37 1 8.5335 -5.0483 -1.0082 38 1 10.5497 -3.2273 -0.2358 39 1 13.8684 -3.3413 -0.5528 40 1 1.6858 -2.1404 0.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568164963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -4.452203 kcal Electronic energy + Delta-G solvation = -20353.426927 eV Core-core repulsion = 17167.908275 eV Total energy + Delta-G solvation = -3185.518653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94245 -39.30116 -36.87219 -34.58870 -33.98715 -32.87449 -32.06175 -30.02637 -27.77457 -26.74786 -25.64883 -24.15688 -23.10451 -22.33675 -20.67685 -19.88698 -18.06887 -17.24911 -17.09808 -16.67601 -15.75033 -15.55960 -14.88425 -14.68868 -14.38841 -14.17757 -13.74900 -13.61676 -13.45180 -13.16651 -13.03714 -13.00490 -12.64438 -12.37397 -12.28671 -12.07135 -11.07971 -10.92060 -10.73974 -10.62117 -10.50346 -10.36321 -10.15501 -10.05697 -9.75136 -9.66032 -9.41084 -9.10560 -8.87784 -6.93101 -5.77297 -3.05853 0.29693 0.80860 2.64098 2.97045 3.44513 3.48770 3.49829 3.50745 3.91902 4.28994 4.41925 4.49269 4.55204 4.58930 4.74754 4.96226 5.11793 5.13609 5.18384 5.25308 5.35419 5.51128 5.57214 5.65409 5.76209 5.78199 5.93408 5.94712 6.07739 6.16831 6.20871 6.35266 6.40783 6.63583 6.75282 6.84596 7.32933 7.47237 7.69620 8.01494 8.41805 9.53006 10.10041 10.44851 11.45620 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047411 B = 0.002627 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.434852 B =10655.172795 C =11087.619383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.118 3.882 4 N -0.482 5.482 5 C 0.128 3.872 6 C -0.179 4.179 7 C 0.560 3.440 8 O -0.536 6.536 9 N -0.717 5.717 10 C 0.126 3.874 11 C -0.111 4.111 12 H 0.078 0.922 13 C -0.142 4.142 14 C 0.161 3.839 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.020 4.020 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.056 10.031 1.798 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.039 4.039 4 N -0.190 5.190 5 C -0.031 4.031 6 C -0.184 4.184 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.368 5.368 10 C 0.003 3.997 11 C -0.131 4.131 12 H 0.096 0.904 13 C -0.200 4.200 14 C 0.033 3.967 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.046 4.046 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.236 0.764 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.897 9.880 1.786 25.920 hybrid contribution 0.750 -0.793 -0.103 1.096 sum -23.147 9.086 1.683 24.924 Atomic orbital electron populations 1.20742 0.89558 1.03498 1.02942 1.20958 0.98074 0.93746 1.02029 1.22926 0.89937 0.97726 0.93295 1.67711 1.08052 1.30927 1.12291 1.23006 1.00386 0.86821 0.92860 1.21065 0.95229 0.94914 1.07208 1.18010 0.82269 0.88306 0.76857 1.90787 1.71153 1.29615 1.49882 1.45992 1.05647 1.10798 1.74399 1.21488 0.90123 0.85418 1.02686 1.21570 0.92450 0.99769 0.99269 0.90413 1.21804 1.02614 0.98965 0.96592 1.20571 0.85497 0.92624 0.98054 1.42329 0.99764 1.06799 1.88642 1.19188 0.87239 0.88544 1.42113 0.91204 1.24737 0.97084 0.96224 1.02971 1.69640 1.15704 1.15493 1.57488 0.86251 0.80921 0.80984 0.77931 1.21261 1.21699 1.21264 1.21653 0.92472 0.99055 0.91447 0.90596 0.90880 0.90959 0.82274 0.82311 0.76413 0.91019 0.91027 0.93945 0.92741 0.91021 0.95959 0.96090 0.78189 0.93461 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.03 36.01 0.36 -0.14 16 2 C -0.15 -1.11 5.89 -104.54 -0.62 -1.72 16 3 C 0.12 0.94 10.85 -17.47 -0.19 0.75 16 4 N -0.48 -4.87 10.35 -12.91 -0.13 -5.00 16 5 C 0.13 1.24 10.71 -17.13 -0.18 1.05 16 6 C -0.18 -1.91 5.89 -104.82 -0.62 -2.53 16 7 C 0.56 7.20 7.78 -12.34 -0.10 7.10 16 8 O -0.54 -8.69 16.42 5.31 0.09 -8.61 16 9 N -0.72 -8.30 5.24 -61.25 -0.32 -8.62 16 10 C 0.13 1.69 5.06 -4.04 -0.02 1.67 16 11 C -0.11 -1.67 2.46 -90.62 -0.22 -1.90 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 13 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 14 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 15 N -0.73 -18.18 5.33 -59.90 -0.32 -18.50 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.02 -0.19 9.39 -38.87 -0.37 -0.55 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.16 0.81 8.06 -52.48 -0.42 0.38 16 29 H 0.16 1.20 6.42 -52.49 -0.34 0.86 16 30 H 0.40 3.72 5.72 -40.82 -0.23 3.49 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.15 1.35 7.74 -52.49 -0.41 0.94 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -33.43 337.89 -7.55 -40.98 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.77 Total: 6.82 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.89 Total: -2.21 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.05 Total: -59.48 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.43 -7.55 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568164963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.529 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds