Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 120.35162 * 2 1 4 4 N 1.31925 * 121.08191 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.87714 * 359.97438 * 4 3 2 6 6 C 1.39516 * 120.57169 * 359.97438 * 5 4 3 7 7 C 1.47832 * 120.56289 * 180.02562 * 6 5 4 8 8 O 1.21562 * 120.00203 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99990 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00173 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47330 * 304.99971 * 11 10 9 13 13 C 1.52999 * 109.47021 * 65.00228 * 11 10 9 14 14 C 1.52999 * 109.47033 * 185.00065 * 11 10 9 15 15 N 1.46508 * 109.46959 * 175.00080 * 14 11 10 16 16 C 1.36934 * 119.99964 * 179.97438 * 15 14 11 17 17 H 1.08005 * 120.00234 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00065 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46803 * 60.00225 * 20 18 16 22 22 H 1.48498 * 109.47238 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47349 * 300.00433 * 20 18 16 24 24 C 1.38355 * 120.34505 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47166 * 269.97648 * 1 2 3 26 26 H 1.09003 * 109.46896 * 29.98001 * 1 2 3 27 27 H 1.08999 * 109.47210 * 149.97076 * 1 2 3 28 28 H 1.08006 * 119.45847 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.71431 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99874 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47384 * 299.99883 * 10 9 7 32 32 H 1.09008 * 109.46921 * 59.99591 * 10 9 7 33 33 H 1.09006 * 109.47092 * 300.00301 * 13 11 10 34 34 H 1.09002 * 109.47278 * 59.99711 * 13 11 10 35 35 H 1.08997 * 109.47062 * 179.97438 * 13 11 10 36 36 H 1.08995 * 109.47280 * 295.00015 * 14 11 10 37 37 H 1.09003 * 109.47458 * 55.00133 * 14 11 10 38 38 H 0.97001 * 119.99720 * 0.02562 * 15 14 11 39 39 H 0.96998 * 120.00179 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.86093 * 359.70613 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1013 -0.0005 6 6 3.6054 -1.1438 0.0005 7 6 4.4022 -2.3890 0.0011 8 8 3.8431 -3.4684 0.0025 9 7 5.7486 -2.3274 0.0011 10 6 6.5383 -3.5614 0.0022 11 6 8.0282 -3.2134 0.0013 12 1 8.2477 -2.5577 -0.8413 13 6 8.3866 -2.5024 1.3077 14 6 8.8515 -4.4969 -0.1233 15 7 10.2714 -4.1565 -0.2442 16 6 11.2055 -5.1500 -0.3680 17 1 10.8957 -6.1846 -0.3770 18 6 12.5507 -4.8274 -0.4831 19 7 12.9283 -3.5667 -0.4728 20 14 13.8252 -6.1828 -0.6513 21 1 13.5418 -6.9800 -1.8717 22 1 15.1781 -5.5797 -0.7565 23 1 13.7688 -7.0661 0.5411 24 6 2.2060 -1.1940 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 1.6629 2.1274 0.0004 29 1 5.3135 0.1558 -0.0014 30 1 6.1947 -1.4661 0.0003 31 1 6.3014 -4.1436 0.8926 32 1 6.3013 -4.1452 -0.8874 33 1 7.7999 -1.5880 1.3966 34 1 8.1671 -3.1581 2.1504 35 1 9.4481 -2.2549 1.3073 36 1 8.6999 -5.1133 0.7627 37 1 8.5335 -5.0483 -1.0082 38 1 10.5497 -3.2273 -0.2358 39 1 13.8684 -3.3413 -0.5528 40 1 1.6858 -2.1404 0.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568164963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = -27.417238 kcal Electronic energy + Delta-G solvation = -20354.422766 eV Core-core repulsion = 17167.908275 eV Total energy + Delta-G solvation = -3186.514491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72940 -40.24071 -38.24475 -36.05913 -34.74813 -34.19251 -33.12632 -31.78129 -28.34151 -27.83244 -27.26274 -25.34891 -24.02460 -23.72774 -21.70467 -21.14480 -19.32342 -18.66641 -17.99836 -17.55822 -16.89563 -16.64069 -16.40063 -15.80830 -15.52913 -15.43534 -15.06804 -14.84175 -14.36486 -14.19303 -14.08640 -13.69580 -13.58137 -13.54148 -13.46513 -12.96113 -12.82008 -12.77325 -12.22110 -12.19378 -12.00721 -11.76238 -11.66525 -11.35515 -10.93187 -10.90508 -10.50417 -10.24310 -9.94701 -8.99155 -7.95077 -5.23345 -0.43127 0.13632 1.47806 1.50562 1.56656 1.74223 1.99068 2.56890 2.77218 3.26772 3.38480 3.62807 3.70106 3.78382 3.81289 3.90856 3.95370 4.06820 4.17652 4.33793 4.48503 4.53998 4.69399 4.74034 4.77541 4.83686 4.93286 4.96051 5.03381 5.12468 5.16462 5.23180 5.26138 5.37307 5.46914 5.50096 5.58029 6.27433 6.38740 6.80063 7.04762 7.34398 8.09735 8.33897 9.28153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047411 B = 0.002627 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.434852 B =10655.172795 C =11087.619383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.118 3.882 4 N -0.503 5.503 5 C 0.125 3.875 6 C -0.194 4.194 7 C 0.562 3.438 8 O -0.576 6.576 9 N -0.707 5.707 10 C 0.138 3.862 11 C -0.095 4.095 12 H 0.080 0.920 13 C -0.137 4.137 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.973 3.027 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.279 1.279 24 C -0.033 4.033 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.191 0.809 29 H 0.175 0.825 30 H 0.413 0.587 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.377 0.623 39 H 0.252 0.748 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.586 10.875 1.893 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.038 4.038 4 N -0.211 5.211 5 C -0.033 4.033 6 C -0.200 4.200 7 C 0.349 3.651 8 O -0.457 6.457 9 N -0.358 5.358 10 C 0.014 3.986 11 C -0.114 4.114 12 H 0.098 0.902 13 C -0.194 4.194 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.205 1.205 24 C -0.059 4.059 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.208 0.792 29 H 0.192 0.808 30 H 0.251 0.749 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.452 10.729 1.884 27.685 hybrid contribution 1.096 -1.020 -0.127 1.502 sum -24.356 9.709 1.757 26.279 Atomic orbital electron populations 1.20828 0.87249 1.04605 1.03921 1.21251 0.99637 0.92760 1.00461 1.23497 0.89509 0.99119 0.91702 1.67775 1.09204 1.30957 1.13126 1.23214 1.01233 0.86338 0.92475 1.20925 0.95558 0.94166 1.09302 1.18328 0.82378 0.88567 0.75807 1.90763 1.71861 1.31183 1.51888 1.45826 1.05369 1.10765 1.73888 1.21214 0.89016 0.86100 1.02310 1.21346 0.92683 0.97554 0.99840 0.90155 1.21745 1.01341 1.00358 0.96003 1.20724 0.83581 0.94995 0.97740 1.42503 1.01531 1.05950 1.88508 1.19589 0.88134 0.89384 1.40821 0.90849 1.25547 0.99096 0.98398 1.03657 1.69791 1.15668 1.17305 1.59074 0.85221 0.78048 0.78381 0.78161 1.20480 1.22058 1.20469 1.21816 0.92322 0.99920 0.91853 0.89533 0.88927 0.90756 0.79247 0.80767 0.74912 0.91322 0.91656 0.90626 0.92869 0.93756 0.95988 0.96146 0.79063 0.93951 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.03 71.24 0.71 0.01 16 2 C -0.14 -1.82 5.89 -19.81 -0.12 -1.94 16 3 C 0.12 1.59 10.85 84.71 0.92 2.51 16 4 N -0.50 -9.18 10.35 -194.76 -2.01 -11.20 16 5 C 0.13 2.25 10.71 85.02 0.91 3.16 16 6 C -0.19 -4.00 5.89 -19.99 -0.12 -4.11 16 7 C 0.56 14.18 7.78 86.78 0.68 14.86 16 8 O -0.58 -18.79 16.42 -3.91 -0.06 -18.86 16 9 N -0.71 -15.57 5.24 -465.97 -2.44 -18.01 16 10 C 0.14 3.59 5.06 86.38 0.44 4.03 16 11 C -0.10 -2.79 2.46 -10.80 -0.03 -2.82 16 12 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.14 -3.83 8.94 71.98 0.64 -3.18 16 14 C 0.16 6.12 5.65 86.38 0.49 6.61 16 15 N -0.74 -37.21 5.33 -343.44 -1.83 -39.04 16 16 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 19 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 20 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 C -0.03 -0.60 9.39 22.73 0.21 -0.38 16 25 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.26 8.09 -2.39 -0.02 0.24 16 27 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 28 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.18 2.32 6.42 -2.91 -0.02 2.30 16 30 H 0.41 6.93 5.72 -92.71 -0.53 6.40 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.07 1.59 7.18 -2.38 -0.02 1.57 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.49 7.18 -2.39 -0.02 1.48 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.38 19.79 6.85 -92.71 -0.63 19.16 16 39 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.14 2.63 7.74 -2.91 -0.02 2.61 16 Total: -1.00 -71.92 337.89 1.90 -70.03 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.11 Total: 25.51 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.05 Total: 1.89 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -6.00 Total: -126.83 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.92 1.90 -70.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568164963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds