Wall clock time and date at job start Mon Mar 30 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38632 * 120.47014 * 2 1 4 4 C 1.38574 * 118.48913 * 180.02562 * 3 2 1 5 5 C 1.38604 * 119.35180 * 359.97438 * 4 3 2 6 6 N 1.31499 * 120.89947 * 359.97438 * 5 4 3 7 7 C 1.32740 * 121.64661 * 0.02562 * 6 5 4 8 8 C 1.48163 * 119.72594 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00374 * 255.86771 * 8 7 6 10 10 N 1.34778 * 119.99826 * 75.86984 * 8 7 6 11 11 C 1.46506 * 120.00081 * 5.02769 * 10 8 7 12 12 C 1.46497 * 120.00039 * 185.03408 * 10 8 7 13 13 H 1.09007 * 109.47153 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47056 * 239.99955 * 12 10 8 15 15 C 1.52992 * 109.47674 * 119.99523 * 12 10 8 16 16 N 1.46506 * 109.47266 * 305.00346 * 15 12 10 17 17 C 1.36926 * 120.00288 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00405 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99766 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00533 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47115 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47163 * 119.99898 * 21 19 17 24 24 H 1.48496 * 109.47538 * 240.00642 * 21 19 17 25 25 H 1.09003 * 109.46599 * 85.23307 * 1 2 3 26 26 H 1.09000 * 109.46761 * 205.23543 * 1 2 3 27 27 H 1.08995 * 109.46653 * 325.23821 * 1 2 3 28 28 H 1.07998 * 120.75504 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.32941 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.55001 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46765 * 84.81766 * 11 10 8 32 32 H 1.09004 * 109.46762 * 204.81439 * 11 10 8 33 33 H 1.08997 * 109.46523 * 324.81175 * 11 10 8 34 34 H 1.09003 * 109.46883 * 299.99249 * 14 12 10 35 35 H 1.09001 * 109.47601 * 59.99464 * 14 12 10 36 36 H 1.09008 * 109.47256 * 179.97438 * 14 12 10 37 37 H 1.09003 * 109.47170 * 65.00134 * 15 12 10 38 38 H 1.09004 * 109.47734 * 185.00221 * 15 12 10 39 39 H 0.96996 * 119.99585 * 359.97438 * 16 15 12 40 40 H 0.96998 * 120.00079 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0005 6 7 3.5407 -1.2024 0.0005 7 6 2.2133 -1.2004 0.0011 8 6 1.4767 -2.4860 0.0016 9 8 0.9513 -2.8857 -1.0185 10 7 1.3895 -3.2121 1.1337 11 6 1.9267 -2.6800 2.3886 12 6 0.7575 -4.5336 1.1095 13 1 0.4212 -4.7570 0.0970 14 6 -0.4426 -4.5424 2.0586 15 6 1.7689 -5.5909 1.5564 16 7 2.9694 -5.5022 0.7214 17 6 4.0186 -6.3550 0.9378 18 1 3.9613 -7.0929 1.7244 19 6 5.1559 -6.2713 0.1463 20 7 5.2259 -5.3717 -0.8120 21 14 6.5874 -7.4342 0.4420 22 1 6.2616 -8.3437 1.5698 23 1 6.8356 -8.2354 -0.7835 24 1 7.8029 -6.6487 0.7744 25 1 -0.3633 0.0854 -1.0242 26 1 -0.3633 -0.9296 0.4381 27 1 -0.3632 0.8442 0.5859 28 1 1.6902 2.1415 -0.0004 29 1 4.1723 2.0597 -0.0010 30 1 5.3115 -0.1250 -0.0005 31 1 1.1807 -2.0413 2.8612 32 1 2.1745 -3.5050 3.0565 33 1 2.8247 -2.0980 2.1813 34 1 -0.1066 -4.3189 3.0712 35 1 -1.1632 -3.7891 1.7402 36 1 -0.9131 -5.5255 2.0402 37 1 2.0378 -5.4190 2.5987 38 1 1.3275 -6.5823 1.4538 39 1 3.0210 -4.8392 0.0152 40 1 6.0207 -5.3129 -1.3649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568265043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:40 Heat of formation + Delta-G solvation = 20.061212 kcal Electronic energy + Delta-G solvation = -22233.252070 eV Core-core repulsion = 19048.796399 eV Total energy + Delta-G solvation = -3184.455671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64026 -38.94637 -36.30403 -33.89595 -33.61091 -32.38541 -31.28369 -29.94048 -27.45998 -26.60136 -25.59740 -24.56809 -22.57558 -22.20238 -21.01775 -19.01631 -17.45154 -17.00382 -16.65242 -16.28892 -15.53776 -14.81177 -14.54974 -14.41613 -14.14799 -13.55480 -13.41870 -13.16662 -13.06534 -12.84750 -12.62810 -12.54065 -12.24052 -12.18137 -12.04807 -11.79175 -11.75615 -11.40761 -10.78615 -10.68659 -10.42507 -9.93635 -9.89204 -9.72174 -9.59309 -9.14628 -8.84739 -8.76514 -8.24417 -6.77545 -5.59516 -2.89955 0.97058 1.29478 2.81084 3.29099 3.50512 3.55177 3.58009 3.79828 4.45503 4.63541 4.69617 4.75548 4.93516 5.01391 5.23071 5.34812 5.43709 5.48923 5.51238 5.52152 5.59735 5.63642 5.70638 5.73182 5.94369 5.99388 6.07163 6.12641 6.13476 6.17534 6.23908 6.43676 6.56070 6.64806 6.77343 7.01446 7.69820 7.80866 8.05072 8.46504 8.55893 9.67494 10.26878 10.62136 11.61446 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.006281 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.392125 B = 4456.831636 C = 5632.827750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.082 4.082 4 C -0.163 4.163 5 C 0.098 3.902 6 N -0.430 5.430 7 C 0.104 3.896 8 C 0.585 3.415 9 O -0.528 6.528 10 N -0.583 5.583 11 C 0.084 3.916 12 C 0.125 3.875 13 H 0.101 0.899 14 C -0.154 4.154 15 C 0.144 3.856 16 N -0.727 5.727 17 C -0.243 4.243 18 H 0.068 0.932 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.388 0.612 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 14.853 6.521 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.108 4.108 4 C -0.183 4.183 5 C -0.061 4.061 6 N -0.139 5.139 7 C -0.036 4.036 8 C 0.370 3.630 9 O -0.403 6.403 10 N -0.315 5.315 11 C -0.059 4.059 12 C 0.022 3.978 13 H 0.119 0.881 14 C -0.212 4.212 15 C 0.015 3.985 16 N -0.371 5.371 17 C -0.374 4.374 18 H 0.086 0.914 19 C -0.207 4.207 20 N -0.568 5.568 21 Si 0.734 3.266 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.178 0.822 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.222 0.778 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.464 13.662 6.050 17.687 hybrid contribution 0.771 0.451 -0.079 0.897 sum -8.693 14.113 5.971 17.618 Atomic orbital electron populations 1.20760 0.89988 1.02967 1.03105 1.20794 0.97515 0.92838 1.00045 1.21359 0.94160 0.97603 0.97712 1.22298 0.95172 0.99724 1.01085 1.22924 1.00715 0.87122 0.95339 1.67851 1.06236 1.31204 1.08588 1.21027 0.90548 0.93207 0.98794 1.17817 0.79076 0.82660 0.83430 1.90779 1.47304 1.70142 1.32063 1.47542 1.57894 1.17559 1.08456 1.21687 0.98253 0.99827 0.86165 1.21472 0.92805 0.81726 1.01819 0.88107 1.22055 0.97430 1.02241 0.99512 1.20999 0.88178 0.94730 0.94569 1.42303 1.13589 1.42039 1.39205 1.19196 0.93978 1.10837 1.13375 0.91387 1.24754 0.98306 0.99170 0.98518 1.69731 1.28654 1.36205 1.22172 0.86185 0.83012 0.80223 0.77141 1.20709 1.22009 1.22015 0.90302 0.91349 0.91020 0.84583 0.84591 0.82184 0.93531 0.90076 0.91259 0.92360 0.92655 0.91286 0.96257 0.95366 0.77755 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.71 36.01 0.35 -0.90 16 2 C -0.11 -1.50 5.93 -104.09 -0.62 -2.12 16 3 C -0.08 -0.91 9.87 -39.31 -0.39 -1.29 16 4 C -0.16 -1.79 10.11 -39.32 -0.40 -2.19 16 5 C 0.10 1.42 11.18 -17.56 -0.20 1.23 16 6 N -0.43 -8.18 9.64 -9.80 -0.09 -8.28 16 7 C 0.10 1.86 4.96 -83.01 -0.41 1.45 16 8 C 0.58 11.73 5.39 -12.18 -0.07 11.67 16 9 O -0.53 -12.21 16.44 5.36 0.09 -12.12 16 10 N -0.58 -10.53 2.24 -174.93 -0.39 -10.93 16 11 C 0.08 1.29 9.26 59.85 0.55 1.85 16 12 C 0.12 2.23 2.79 -67.94 -0.19 2.05 16 13 H 0.10 2.04 6.91 -51.93 -0.36 1.68 16 14 C -0.15 -2.01 9.19 37.16 0.34 -1.67 16 15 C 0.14 3.02 5.52 -4.04 -0.02 3.00 16 16 N -0.73 -19.62 5.43 -59.91 -0.33 -19.95 16 17 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.92 -29.45 13.06 55.49 0.72 -28.72 16 21 Si 0.90 23.25 29.55 -169.99 -5.02 18.23 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 33 H 0.07 1.16 6.50 -51.93 -0.34 0.82 16 34 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.02 0.40 6.86 -51.93 -0.36 0.04 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.39 11.52 7.06 -40.82 -0.29 11.23 16 40 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -36.43 334.71 -7.06 -43.49 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.79 Total: 7.85 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.29 Total: 5.39 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.09 Total: -67.88 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.43 -7.06 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568265043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.548 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds