Wall clock time and date at job start Mon Mar 30 2020 01:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38632 * 120.47014 * 2 1 4 4 C 1.38574 * 118.48913 * 180.02562 * 3 2 1 5 5 C 1.38604 * 119.35180 * 359.97438 * 4 3 2 6 6 N 1.31499 * 120.89947 * 359.97438 * 5 4 3 7 7 C 1.32740 * 121.64661 * 0.02562 * 6 5 4 8 8 C 1.48163 * 119.72594 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00374 * 255.86771 * 8 7 6 10 10 N 1.34778 * 119.99826 * 75.86984 * 8 7 6 11 11 C 1.46506 * 120.00081 * 5.02769 * 10 8 7 12 12 C 1.46497 * 120.00039 * 185.03408 * 10 8 7 13 13 H 1.09007 * 109.47153 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47056 * 239.99955 * 12 10 8 15 15 C 1.52992 * 109.47674 * 119.99523 * 12 10 8 16 16 N 1.46506 * 109.47266 * 305.00346 * 15 12 10 17 17 C 1.36926 * 120.00288 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00405 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99766 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00533 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47115 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47163 * 119.99898 * 21 19 17 24 24 H 1.48496 * 109.47538 * 240.00642 * 21 19 17 25 25 H 1.09003 * 109.46599 * 85.23307 * 1 2 3 26 26 H 1.09000 * 109.46761 * 205.23543 * 1 2 3 27 27 H 1.08995 * 109.46653 * 325.23821 * 1 2 3 28 28 H 1.07998 * 120.75504 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.32941 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.55001 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46765 * 84.81766 * 11 10 8 32 32 H 1.09004 * 109.46762 * 204.81439 * 11 10 8 33 33 H 1.08997 * 109.46523 * 324.81175 * 11 10 8 34 34 H 1.09003 * 109.46883 * 299.99249 * 14 12 10 35 35 H 1.09001 * 109.47601 * 59.99464 * 14 12 10 36 36 H 1.09008 * 109.47256 * 179.97438 * 14 12 10 37 37 H 1.09003 * 109.47170 * 65.00134 * 15 12 10 38 38 H 1.09004 * 109.47734 * 185.00221 * 15 12 10 39 39 H 0.96996 * 119.99585 * 359.97438 * 16 15 12 40 40 H 0.96998 * 120.00079 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0005 6 7 3.5407 -1.2024 0.0005 7 6 2.2133 -1.2004 0.0011 8 6 1.4767 -2.4860 0.0016 9 8 0.9513 -2.8857 -1.0185 10 7 1.3895 -3.2121 1.1337 11 6 1.9267 -2.6800 2.3886 12 6 0.7575 -4.5336 1.1095 13 1 0.4212 -4.7570 0.0970 14 6 -0.4426 -4.5424 2.0586 15 6 1.7689 -5.5909 1.5564 16 7 2.9694 -5.5022 0.7214 17 6 4.0186 -6.3550 0.9378 18 1 3.9613 -7.0929 1.7244 19 6 5.1559 -6.2713 0.1463 20 7 5.2259 -5.3717 -0.8120 21 14 6.5874 -7.4342 0.4420 22 1 6.2616 -8.3437 1.5698 23 1 6.8356 -8.2354 -0.7835 24 1 7.8029 -6.6487 0.7744 25 1 -0.3633 0.0854 -1.0242 26 1 -0.3633 -0.9296 0.4381 27 1 -0.3632 0.8442 0.5859 28 1 1.6902 2.1415 -0.0004 29 1 4.1723 2.0597 -0.0010 30 1 5.3115 -0.1250 -0.0005 31 1 1.1807 -2.0413 2.8612 32 1 2.1745 -3.5050 3.0565 33 1 2.8247 -2.0980 2.1813 34 1 -0.1066 -4.3189 3.0712 35 1 -1.1632 -3.7891 1.7402 36 1 -0.9131 -5.5255 2.0402 37 1 2.0378 -5.4190 2.5987 38 1 1.3275 -6.5823 1.4538 39 1 3.0210 -4.8392 0.0152 40 1 6.0207 -5.3129 -1.3649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568265043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:39 Heat of formation + Delta-G solvation = -6.068849 kcal Electronic energy + Delta-G solvation = -22234.385154 eV Core-core repulsion = 19048.796399 eV Total energy + Delta-G solvation = -3185.588756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86128 -40.25452 -37.89222 -35.83555 -34.63769 -33.83747 -32.74082 -31.65235 -28.45583 -27.89393 -27.40211 -25.79233 -24.45531 -23.30393 -22.36888 -20.45404 -19.10949 -18.76676 -17.89010 -17.65178 -16.80221 -16.44017 -16.08330 -15.65890 -15.42486 -15.14917 -15.09415 -14.70409 -14.14152 -14.00983 -13.80645 -13.74098 -13.67411 -13.40856 -13.29061 -13.27343 -12.97948 -12.82062 -12.70093 -12.51480 -12.09816 -11.83425 -11.73885 -11.29467 -10.95836 -10.74309 -10.30147 -9.92057 -9.66646 -8.98272 -7.89346 -5.21172 -0.08371 0.32051 1.37437 1.43844 1.46511 1.56300 1.97207 2.55891 2.72457 3.25282 3.41727 3.65668 3.83438 3.86061 4.00033 4.06396 4.09976 4.18508 4.26615 4.43395 4.51373 4.51949 4.59779 4.67209 4.74389 4.76905 4.83230 4.89699 4.94195 5.08567 5.10889 5.15181 5.20495 5.29384 5.47619 5.58002 5.71324 6.26840 6.29327 6.93606 7.05057 7.33688 8.10367 8.33691 9.32855 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.006281 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.392125 B = 4456.831636 C = 5632.827750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C -0.072 4.072 4 C -0.139 4.139 5 C 0.075 3.925 6 N -0.490 5.490 7 C 0.066 3.934 8 C 0.576 3.424 9 O -0.578 6.578 10 N -0.582 5.582 11 C 0.086 3.914 12 C 0.127 3.873 13 H 0.069 0.931 14 C -0.140 4.140 15 C 0.141 3.859 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.964 5.964 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.293 1.293 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.185 0.815 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.035 0.965 39 H 0.370 0.630 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 16.788 8.628 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.097 4.097 4 C -0.158 4.158 5 C -0.084 4.084 6 N -0.201 5.201 7 C -0.072 4.072 8 C 0.363 3.637 9 O -0.458 6.458 10 N -0.312 5.312 11 C -0.056 4.056 12 C 0.023 3.977 13 H 0.087 0.913 14 C -0.198 4.198 15 C 0.014 3.986 16 N -0.385 5.385 17 C -0.378 4.378 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.614 5.614 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.224 1.224 24 H -0.221 1.221 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.202 0.798 29 H 0.199 0.801 30 H 0.185 0.815 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.201 0.799 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.255 15.575 8.239 20.387 hybrid contribution 0.987 -0.094 -0.701 1.214 sum -9.268 15.481 7.539 19.555 Atomic orbital electron populations 1.20813 0.88393 1.03710 1.03592 1.21122 0.98738 0.92406 0.98820 1.21913 0.94167 0.98220 0.95440 1.22723 0.95681 0.99699 0.97712 1.23257 1.01235 0.87745 0.96205 1.67639 1.07418 1.34138 1.10863 1.20820 0.90538 0.93367 1.02499 1.18388 0.78568 0.83685 0.83019 1.90716 1.49636 1.71736 1.33693 1.47679 1.57329 1.17198 1.09012 1.21789 0.98782 1.00038 0.84972 1.21419 0.93697 0.81122 1.01414 0.91322 1.21965 0.95211 1.03701 0.98920 1.21237 0.86910 0.96181 0.94320 1.42537 1.15115 1.41267 1.39591 1.19665 0.94516 1.10684 1.12903 0.90291 1.25664 1.01425 1.01245 0.98673 1.69945 1.29201 1.38579 1.23662 0.85032 0.79112 0.78077 0.77238 1.18626 1.22372 1.22057 0.90424 0.93149 0.87053 0.79809 0.80089 0.81464 0.89589 0.90180 0.93015 0.90406 0.91491 0.89719 0.94571 0.94718 0.79866 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.71 71.24 0.69 -1.56 16 2 C -0.11 -2.84 5.93 -19.52 -0.12 -2.95 16 3 C -0.07 -1.32 9.87 22.44 0.22 -1.09 16 4 C -0.14 -2.64 10.11 22.44 0.23 -2.41 16 5 C 0.07 2.16 11.18 84.83 0.95 3.11 16 6 N -0.49 -19.56 9.64 -184.91 -1.78 -21.34 16 7 C 0.07 2.45 4.96 41.89 0.21 2.65 16 8 C 0.58 24.40 5.39 86.88 0.47 24.86 16 9 O -0.58 -28.81 16.44 -3.75 -0.06 -28.87 16 10 N -0.58 -21.60 2.24 -825.65 -1.85 -23.46 16 11 C 0.09 2.64 9.26 127.77 1.18 3.82 16 12 C 0.13 4.63 2.79 44.99 0.13 4.75 16 13 H 0.07 2.95 6.91 -2.38 -0.02 2.93 16 14 C -0.14 -3.40 9.19 71.98 0.66 -2.74 16 15 C 0.14 5.94 5.52 86.38 0.48 6.42 16 16 N -0.74 -41.45 5.43 -343.45 -1.87 -43.31 16 17 C -0.25 -14.62 9.99 84.04 0.84 -13.78 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 20 N -0.96 -64.30 13.06 21.65 0.28 -64.02 16 21 Si 0.98 48.79 29.55 68.60 2.03 50.82 16 22 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 24 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.23 6.91 -2.39 -0.02 1.21 16 27 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 28 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.41 6.54 -2.38 -0.02 2.39 16 33 H 0.05 1.78 6.50 -2.39 -0.02 1.76 16 34 H 0.08 1.61 7.67 -2.39 -0.02 1.59 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 38 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.37 23.21 7.06 -92.71 -0.65 22.56 16 40 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -85.75 334.71 3.53 -82.22 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.39 Total: 31.18 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.40 Total: 16.79 kcal Atomic # 7 Polarization: -146.91 SS G_CDS: -5.22 Total: -152.13 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -85.75 3.53 -82.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568265043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.146 kcal (2) G-P(sol) polarization free energy of solvation -85.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds