Wall clock time and date at job start Mon Mar 30 2020 01:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50687 * 1 3 3 C 1.36767 * 125.80502 * 2 1 4 4 C 1.47273 * 126.94130 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99646 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00012 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99614 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46908 * 180.02562 * 7 6 4 9 9 C 1.30998 * 120.00172 * 127.15413 * 8 7 6 10 10 C 1.50706 * 119.99851 * 7.56082 * 9 8 7 11 11 N 1.46505 * 109.47082 * 127.00695 * 10 9 8 12 12 C 1.36933 * 119.99981 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99704 * 359.97438 * 12 11 10 14 14 C 1.38807 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31616 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00039 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46694 * 89.99722 * 16 14 12 18 18 H 1.48494 * 109.47249 * 210.00071 * 16 14 12 19 19 H 1.48499 * 109.47154 * 330.00329 * 16 14 12 20 20 C 1.46688 * 106.11771 * 180.24621 * 3 2 1 21 21 C 1.34486 * 106.33295 * 359.62618 * 20 3 2 22 22 N 1.34666 * 125.80067 * 180.02562 * 2 1 3 23 23 C 1.46491 * 124.84953 * 359.97438 * 22 2 1 24 24 H 1.09006 * 109.47135 * 90.00112 * 1 2 3 25 25 H 1.09006 * 109.47692 * 210.00241 * 1 2 3 26 26 H 1.09000 * 109.47129 * 330.00120 * 1 2 3 27 27 H 0.96999 * 119.99946 * 0.02562 * 6 4 3 28 28 H 1.08993 * 109.47453 * 59.99994 * 7 6 4 29 29 H 1.09000 * 109.47088 * 299.99931 * 7 6 4 30 30 H 1.08002 * 119.99826 * 307.15542 * 8 7 6 31 31 H 1.08003 * 120.00422 * 187.55799 * 9 8 7 32 32 H 1.09005 * 109.46806 * 247.00121 * 10 9 8 33 33 H 1.08992 * 109.47230 * 7.00354 * 10 9 8 34 34 H 0.96997 * 119.99827 * 359.97438 * 11 10 9 35 35 H 0.97006 * 119.99951 * 179.97438 * 15 14 12 36 36 H 1.08003 * 126.83400 * 179.74682 * 20 3 2 37 37 H 1.07997 * 125.56841 * 180.08666 * 21 20 3 38 38 H 1.09004 * 109.46903 * 90.00617 * 23 22 2 39 39 H 1.09009 * 109.47180 * 210.00091 * 23 22 2 40 40 H 1.09000 * 109.47424 * 330.00087 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5157 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7850 3.5054 -0.0010 7 6 2.3504 4.9044 -0.0009 8 6 3.5582 5.8056 -0.0021 9 6 3.6728 6.7463 -0.9066 10 6 2.5248 7.0401 -1.8377 11 7 2.2087 8.4698 -1.7873 12 6 1.1930 8.9739 -2.5549 13 1 0.6251 8.3176 -3.1978 14 6 0.8932 10.3283 -2.5068 15 7 1.5849 11.1280 -1.7230 16 14 -0.4921 11.0162 -3.5545 17 1 -1.7645 10.9609 -2.7908 18 1 -0.1898 12.4255 -3.9116 19 1 -0.6232 10.2087 -4.7938 20 6 3.6881 0.6150 -0.0061 21 6 3.6095 -0.7275 -0.0007 22 7 2.2946 -1.0922 -0.0005 23 6 1.8093 -2.4744 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3635 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.7311 3.2914 -0.0013 28 1 1.7523 5.0991 0.8892 29 1 1.7516 5.0989 -0.8907 30 1 4.3295 5.6759 0.7427 31 1 4.5899 7.3113 -0.9851 32 1 2.8027 6.7651 -2.8552 33 1 1.6518 6.4640 -1.5312 34 1 2.7185 9.0591 -1.2097 35 1 1.3756 12.0746 -1.6897 36 1 4.5890 1.2108 -0.0115 37 1 4.4497 -1.4060 -0.0017 38 1 1.6886 -2.8170 -1.0283 39 1 2.5288 -3.1122 0.5129 40 1 0.8493 -2.5225 0.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568916694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:43 Heat of formation + Delta-G solvation = 45.222593 kcal Electronic energy + Delta-G solvation = -20262.837130 eV Core-core repulsion = 17079.472538 eV Total energy + Delta-G solvation = -3183.364592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54541 -39.02024 -36.40872 -34.37482 -33.21357 -32.54097 -31.75015 -30.36268 -27.63446 -26.56872 -25.88984 -24.64564 -22.41315 -22.18688 -20.18078 -19.51071 -18.33440 -17.50382 -16.80104 -16.07299 -15.92853 -15.70202 -15.14698 -14.57968 -14.38420 -14.04530 -13.54798 -13.34690 -13.28439 -13.15401 -13.06688 -12.85146 -12.74118 -12.53043 -12.38655 -12.16280 -11.72710 -11.60804 -10.89732 -10.76181 -10.33598 -9.97876 -9.77333 -9.70215 -9.03382 -8.95163 -8.80240 -8.51284 -8.28622 -6.85961 -5.71724 -3.00471 1.67309 2.22653 2.35125 2.57491 3.48884 3.53598 3.55460 3.65587 3.71249 4.34571 4.53666 4.66088 4.66476 4.69097 4.90358 5.03605 5.07352 5.24053 5.36035 5.41321 5.48510 5.61806 5.69556 5.79937 5.82055 5.98923 6.03638 6.09963 6.36356 6.51105 6.58135 6.63625 6.73403 6.84464 6.97299 6.99522 7.24683 7.75587 7.79450 8.46962 8.51843 9.58222 10.14823 10.50382 11.51200 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.002759 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.323366 B =10145.154494 C =10769.728814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.103 3.897 3 C -0.234 4.234 4 C 0.587 3.413 5 O -0.551 6.551 6 N -0.720 5.720 7 C 0.143 3.857 8 C -0.197 4.197 9 C -0.112 4.112 10 C 0.162 3.838 11 N -0.728 5.728 12 C -0.239 4.239 13 H 0.071 0.929 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.167 4.167 21 C -0.021 4.021 22 N -0.448 5.448 23 C 0.068 3.932 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.398 0.602 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -29.137 5.676 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.013 4.013 3 C -0.243 4.243 4 C 0.376 3.624 5 O -0.431 6.431 6 N -0.370 5.370 7 C 0.020 3.980 8 C -0.216 4.216 9 C -0.131 4.131 10 C 0.035 3.965 11 N -0.372 5.372 12 C -0.370 4.370 13 H 0.089 0.911 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.740 3.260 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.191 4.191 21 C -0.147 4.147 22 N -0.124 5.124 23 C -0.074 4.074 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.231 0.769 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.517 -29.255 5.546 30.116 hybrid contribution 0.209 0.507 -0.307 0.628 sum 4.725 -28.748 5.239 29.601 Atomic orbital electron populations 1.20580 0.87074 1.04044 1.03472 1.20336 0.93801 0.85143 1.02047 1.20167 0.93177 0.92076 1.18925 1.17332 0.85365 0.83967 0.75745 1.90747 1.16652 1.84401 1.51265 1.45778 1.09605 1.05948 1.75680 1.20522 0.95511 0.78460 1.03477 1.22610 0.99372 0.99723 0.99904 1.23268 0.98966 0.96008 0.94886 1.20014 0.93033 0.88003 0.95457 1.42278 1.40468 1.01998 1.52474 1.19259 1.08357 0.91867 1.17489 0.91060 1.24753 0.99866 0.96187 1.00256 1.69669 1.42581 1.04074 1.41940 0.86159 0.81881 0.78152 0.79846 1.21647 1.21778 1.20717 1.22023 0.95826 0.93562 1.07672 1.21663 0.85352 0.96247 1.11413 1.43544 1.06054 1.06088 1.56755 1.22088 1.01707 0.80093 1.03527 0.90426 0.92105 0.87899 0.76860 0.91207 0.89432 0.87141 0.86984 0.95463 0.94545 0.78186 0.93525 0.83685 0.81681 0.90670 0.89643 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.52 36.00 0.34 -0.59 16 2 C 0.10 1.15 6.89 -81.89 -0.56 0.59 16 3 C -0.23 -2.98 6.29 -103.35 -0.65 -3.63 16 4 C 0.59 8.99 7.81 -12.59 -0.10 8.90 16 5 O -0.55 -10.23 14.81 5.26 0.08 -10.16 16 6 N -0.72 -9.77 5.54 -62.62 -0.35 -10.12 16 7 C 0.14 2.22 5.76 -5.19 -0.03 2.19 16 8 C -0.20 -2.87 9.63 -36.02 -0.35 -3.22 16 9 C -0.11 -1.91 9.63 -36.02 -0.35 -2.25 16 10 C 0.16 3.44 6.35 -5.19 -0.03 3.40 16 11 N -0.73 -19.32 5.59 -61.08 -0.34 -19.66 16 12 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 13 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 14 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 16 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.17 -1.64 10.56 -37.50 -0.40 -2.04 16 21 C -0.02 -0.17 11.34 -16.82 -0.19 -0.36 16 22 N -0.45 -3.75 3.09 -119.89 -0.37 -4.12 16 23 C 0.07 0.28 10.82 59.84 0.65 0.93 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.42 6.92 -51.93 -0.36 0.06 16 26 H 0.10 1.26 6.47 -51.93 -0.34 0.92 16 27 H 0.40 4.28 7.59 -40.82 -0.31 3.97 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.56 5.30 -51.93 -0.28 1.29 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.79 5.29 -51.93 -0.27 0.52 16 34 H 0.38 10.63 7.66 -40.82 -0.31 10.32 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.15 1.11 7.70 -52.48 -0.40 0.71 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.19 8.13 -51.92 -0.42 -0.23 16 40 H 0.08 0.28 6.88 -51.93 -0.36 -0.08 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -35.64 337.85 -7.66 -43.30 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.56 Total: 9.60 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.91 Total: -3.72 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.33 Total: -62.17 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.64 -7.66 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568916694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.520 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds