Wall clock time and date at job start Mon Mar 30 2020 01:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50687 * 1 3 3 C 1.36767 * 125.80502 * 2 1 4 4 C 1.47273 * 126.94130 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99646 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00012 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99614 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46908 * 180.02562 * 7 6 4 9 9 C 1.30998 * 120.00172 * 127.15413 * 8 7 6 10 10 C 1.50706 * 119.99851 * 7.56082 * 9 8 7 11 11 N 1.46505 * 109.47082 * 127.00695 * 10 9 8 12 12 C 1.36933 * 119.99981 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99704 * 359.97438 * 12 11 10 14 14 C 1.38807 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31616 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00039 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46694 * 89.99722 * 16 14 12 18 18 H 1.48494 * 109.47249 * 210.00071 * 16 14 12 19 19 H 1.48499 * 109.47154 * 330.00329 * 16 14 12 20 20 C 1.46688 * 106.11771 * 180.24621 * 3 2 1 21 21 C 1.34486 * 106.33295 * 359.62618 * 20 3 2 22 22 N 1.34666 * 125.80067 * 180.02562 * 2 1 3 23 23 C 1.46491 * 124.84953 * 359.97438 * 22 2 1 24 24 H 1.09006 * 109.47135 * 90.00112 * 1 2 3 25 25 H 1.09006 * 109.47692 * 210.00241 * 1 2 3 26 26 H 1.09000 * 109.47129 * 330.00120 * 1 2 3 27 27 H 0.96999 * 119.99946 * 0.02562 * 6 4 3 28 28 H 1.08993 * 109.47453 * 59.99994 * 7 6 4 29 29 H 1.09000 * 109.47088 * 299.99931 * 7 6 4 30 30 H 1.08002 * 119.99826 * 307.15542 * 8 7 6 31 31 H 1.08003 * 120.00422 * 187.55799 * 9 8 7 32 32 H 1.09005 * 109.46806 * 247.00121 * 10 9 8 33 33 H 1.08992 * 109.47230 * 7.00354 * 10 9 8 34 34 H 0.96997 * 119.99827 * 359.97438 * 11 10 9 35 35 H 0.97006 * 119.99951 * 179.97438 * 15 14 12 36 36 H 1.08003 * 126.83400 * 179.74682 * 20 3 2 37 37 H 1.07997 * 125.56841 * 180.08666 * 21 20 3 38 38 H 1.09004 * 109.46903 * 90.00617 * 23 22 2 39 39 H 1.09009 * 109.47180 * 210.00091 * 23 22 2 40 40 H 1.09000 * 109.47424 * 330.00087 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5157 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7850 3.5054 -0.0010 7 6 2.3504 4.9044 -0.0009 8 6 3.5582 5.8056 -0.0021 9 6 3.6728 6.7463 -0.9066 10 6 2.5248 7.0401 -1.8377 11 7 2.2087 8.4698 -1.7873 12 6 1.1930 8.9739 -2.5549 13 1 0.6251 8.3176 -3.1978 14 6 0.8932 10.3283 -2.5068 15 7 1.5849 11.1280 -1.7230 16 14 -0.4921 11.0162 -3.5545 17 1 -1.7645 10.9609 -2.7908 18 1 -0.1898 12.4255 -3.9116 19 1 -0.6232 10.2087 -4.7938 20 6 3.6881 0.6150 -0.0061 21 6 3.6095 -0.7275 -0.0007 22 7 2.2946 -1.0922 -0.0005 23 6 1.8093 -2.4744 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3635 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.7311 3.2914 -0.0013 28 1 1.7523 5.0991 0.8892 29 1 1.7516 5.0989 -0.8907 30 1 4.3295 5.6759 0.7427 31 1 4.5899 7.3113 -0.9851 32 1 2.8027 6.7651 -2.8552 33 1 1.6518 6.4640 -1.5312 34 1 2.7185 9.0591 -1.2097 35 1 1.3756 12.0746 -1.6897 36 1 4.5890 1.2108 -0.0115 37 1 4.4497 -1.4060 -0.0017 38 1 1.6886 -2.8170 -1.0283 39 1 2.5288 -3.1122 0.5129 40 1 0.8493 -2.5225 0.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568916694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:43 Heat of formation + Delta-G solvation = 20.356643 kcal Electronic energy + Delta-G solvation = -20263.915398 eV Core-core repulsion = 17079.472538 eV Total energy + Delta-G solvation = -3184.442860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26148 -40.18873 -37.91731 -36.05641 -34.45877 -33.59011 -32.51490 -32.27543 -28.73582 -27.32353 -27.18271 -26.03704 -24.39451 -23.10658 -21.09293 -20.53867 -19.69588 -18.86273 -18.15469 -17.44336 -16.73856 -16.63097 -16.46012 -16.17297 -15.55420 -15.32537 -15.08362 -14.89304 -14.28854 -14.17185 -14.02889 -13.90910 -13.77234 -13.58799 -13.26229 -13.10244 -12.91243 -12.83198 -12.73531 -12.44345 -12.17184 -11.90236 -11.64995 -11.04014 -10.94380 -10.30362 -9.93043 -9.48391 -9.09077 -8.98955 -7.97741 -5.27379 0.75665 1.06977 1.46102 1.48694 1.54785 1.57202 1.94629 2.54905 2.59802 2.63020 3.35443 3.81100 3.85235 3.99612 4.05331 4.14205 4.17476 4.20771 4.36618 4.42570 4.44842 4.63199 4.66296 4.73187 4.76087 4.87324 4.91613 5.00232 5.08801 5.09159 5.28401 5.45035 5.49682 5.58991 5.82293 5.87686 6.12253 6.25001 6.39076 6.73436 7.30770 7.39481 8.04194 8.29874 9.25723 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.002759 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.323366 B =10145.154494 C =10769.728814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.090 3.910 3 C -0.271 4.271 4 C 0.579 3.421 5 O -0.596 6.596 6 N -0.707 5.707 7 C 0.144 3.856 8 C -0.158 4.158 9 C -0.134 4.134 10 C 0.161 3.839 11 N -0.741 5.741 12 C -0.251 4.251 13 H 0.073 0.927 14 C -0.075 4.075 15 N -0.968 5.968 16 Si 0.977 3.023 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.270 1.270 20 C -0.182 4.182 21 C -0.009 4.009 22 N -0.443 5.443 23 C 0.058 3.942 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.413 0.587 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.024 0.976 33 H 0.031 0.969 34 H 0.376 0.624 35 H 0.253 0.747 36 H 0.163 0.837 37 H 0.205 0.795 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -31.810 5.875 33.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C -0.281 4.281 4 C 0.370 3.630 5 O -0.479 6.479 6 N -0.359 5.359 7 C 0.021 3.979 8 C -0.177 4.177 9 C -0.154 4.154 10 C 0.035 3.965 11 N -0.384 5.384 12 C -0.383 4.383 13 H 0.091 0.909 14 C -0.267 4.267 15 N -0.618 5.618 16 Si 0.805 3.195 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.195 1.195 20 C -0.206 4.206 21 C -0.135 4.135 22 N -0.118 5.118 23 C -0.082 4.082 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.250 0.750 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.208 0.792 35 H 0.062 0.938 36 H 0.180 0.820 37 H 0.221 0.779 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.764 -31.996 5.736 33.013 hybrid contribution -0.156 1.139 -0.330 1.196 sum 5.608 -30.857 5.406 31.825 Atomic orbital electron populations 1.20505 0.86902 1.04049 1.03371 1.20486 0.94329 0.85968 1.02032 1.20183 0.95377 0.90859 1.21711 1.17877 0.84890 0.85392 0.74823 1.90714 1.18513 1.85229 1.53469 1.45587 1.10354 1.04749 1.75177 1.20327 0.95850 0.80069 1.01696 1.22788 0.98852 0.97292 0.98758 1.23033 0.98353 0.98266 0.95715 1.20075 0.94692 0.85162 0.96534 1.42474 1.39895 1.04047 1.51964 1.19637 1.08794 0.92324 1.17523 0.90943 1.25614 1.02608 0.96551 1.01914 1.69818 1.44292 1.04109 1.43594 0.85101 0.78650 0.77288 0.78489 1.21341 1.21625 1.19469 1.22295 0.95018 0.94711 1.08543 1.22292 0.86085 0.96262 1.08902 1.43848 1.05978 1.06966 1.55019 1.22442 1.02927 0.77965 1.04862 0.90562 0.89040 0.90893 0.74976 0.92220 0.92180 0.83232 0.85562 0.95818 0.95114 0.79195 0.93804 0.81970 0.77871 0.89507 0.87082 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.52 71.23 0.68 -1.12 16 2 C 0.09 1.95 6.89 41.78 0.29 2.24 16 3 C -0.27 -6.85 6.29 -19.04 -0.12 -6.97 16 4 C 0.58 18.29 7.81 86.62 0.68 18.96 16 5 O -0.60 -23.50 14.81 -4.11 -0.06 -23.56 16 6 N -0.71 -19.11 5.54 -470.27 -2.61 -21.71 16 7 C 0.14 4.53 5.76 85.63 0.49 5.02 16 8 C -0.16 -4.36 9.63 25.65 0.25 -4.11 16 9 C -0.13 -4.49 9.63 25.65 0.25 -4.25 16 10 C 0.16 7.00 6.35 85.63 0.54 7.54 16 11 N -0.74 -40.20 5.59 -347.16 -1.94 -42.14 16 12 C -0.25 -14.89 9.99 84.03 0.84 -14.05 16 13 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 14 C -0.07 -4.46 5.50 84.86 0.47 -4.00 16 15 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 16 Si 0.98 47.94 29.55 68.60 2.03 49.96 16 17 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 18 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 C -0.18 -3.22 10.56 23.62 0.25 -2.97 16 21 C -0.01 -0.12 11.34 83.12 0.94 0.82 16 22 N -0.44 -6.25 3.09 -533.22 -1.65 -7.89 16 23 C 0.06 0.28 10.82 127.77 1.38 1.66 16 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.09 1.14 6.92 -2.38 -0.02 1.13 16 26 H 0.07 1.91 6.47 -2.39 -0.02 1.89 16 27 H 0.41 8.32 7.59 -92.71 -0.70 7.62 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.25 5.30 -2.39 -0.01 2.24 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.03 1.39 5.29 -2.39 -0.01 1.38 16 34 H 0.38 21.29 7.66 -92.71 -0.71 20.58 16 35 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 36 H 0.16 2.08 7.70 -2.91 -0.02 2.06 16 37 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.11 0.00 8.13 -2.38 -0.02 -0.02 16 40 H 0.09 0.31 6.88 -2.39 -0.02 0.29 16 Total: -1.00 -79.85 337.85 2.64 -77.21 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.35 Total: 30.10 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.93 Total: -1.21 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -5.91 Total: -132.50 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Total: -79.85 2.64 -77.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568916694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.569 kcal (2) G-P(sol) polarization free energy of solvation -79.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds