Wall clock time and date at job start Mon Mar 30 2020 01:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36762 * 125.80401 * 2 1 4 4 C 1.47262 * 126.94445 * 359.97438 * 3 2 1 5 5 O 1.21629 * 119.99583 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00578 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00215 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46804 * 180.02562 * 7 6 4 9 9 C 1.30994 * 119.99826 * 125.27541 * 8 7 6 10 10 C 1.50702 * 120.00204 * 179.71900 * 9 8 7 11 11 N 1.46500 * 109.46883 * 124.99760 * 10 9 8 12 12 C 1.36943 * 119.99537 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00422 * 180.02562 * 14 12 11 16 16 Si 1.86810 * 119.99902 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47261 * 89.99809 * 16 14 12 18 18 H 1.48494 * 109.47034 * 210.00404 * 16 14 12 19 19 H 1.48509 * 109.46803 * 330.00181 * 16 14 12 20 20 C 1.46687 * 106.11624 * 180.24627 * 3 2 1 21 21 C 1.34491 * 106.33351 * 359.63062 * 20 3 2 22 22 N 1.34664 * 125.79802 * 180.02562 * 2 1 3 23 23 C 1.46496 * 124.85101 * 0.02562 * 22 2 1 24 24 H 1.09007 * 109.47427 * 89.99879 * 1 2 3 25 25 H 1.08998 * 109.47412 * 209.99806 * 1 2 3 26 26 H 1.09001 * 109.47149 * 329.99717 * 1 2 3 27 27 H 0.96997 * 119.99865 * 359.97438 * 6 4 3 28 28 H 1.08998 * 109.47066 * 59.99906 * 7 6 4 29 29 H 1.09001 * 109.47002 * 300.00046 * 7 6 4 30 30 H 1.08002 * 119.99761 * 304.99301 * 8 7 6 31 31 H 1.08002 * 120.00350 * 359.72370 * 9 8 7 32 32 H 1.08998 * 109.47600 * 245.00508 * 10 9 8 33 33 H 1.09004 * 109.46937 * 5.00335 * 10 9 8 34 34 H 0.96999 * 120.00357 * 0.02562 * 11 10 9 35 35 H 0.96992 * 120.00213 * 179.97438 * 15 14 12 36 36 H 1.07998 * 126.83515 * 179.74993 * 20 3 2 37 37 H 1.07993 * 125.57340 * 180.08338 * 21 20 3 38 38 H 1.09006 * 109.47255 * 89.99993 * 23 22 2 39 39 H 1.08998 * 109.47089 * 209.99788 * 23 22 2 40 40 H 1.08991 * 109.47459 * 329.99816 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8703 2.5155 -0.0005 5 8 0.6840 2.7839 -0.0015 6 7 2.7850 3.5053 0.0001 7 6 2.3505 4.9044 -0.0010 8 6 3.5584 5.8055 -0.0007 9 6 3.6922 6.7218 -0.9273 10 6 4.8970 7.6271 -0.9234 11 7 5.5727 7.5463 -2.2207 12 6 6.7010 8.2870 -2.4522 13 1 7.0929 8.9304 -1.6783 14 6 7.3411 8.2109 -3.6816 15 7 8.4258 8.9224 -3.9040 16 14 6.6636 7.0976 -5.0200 17 1 5.6942 7.8558 -5.8510 18 1 7.7784 6.6164 -5.8748 19 1 5.9796 5.9355 -4.3979 20 6 3.6882 0.6150 -0.0061 21 6 3.6095 -0.7276 -0.0008 22 7 2.2947 -1.0922 -0.0005 23 6 1.8092 -2.4744 -0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.7311 3.2914 0.0012 28 1 1.7510 5.0994 0.8882 29 1 1.7530 5.0986 -0.8918 30 1 4.3114 5.6989 0.7661 31 1 2.9392 6.8285 -1.6941 32 1 4.5793 8.6540 -0.7424 33 1 5.5834 7.3151 -0.1361 34 1 5.2209 6.9682 -2.9156 35 1 8.8732 8.8689 -4.7629 36 1 4.5890 1.2107 -0.0115 37 1 4.4496 -1.4061 -0.0019 38 1 1.6892 -2.8166 -1.0296 39 1 2.5284 -3.1125 0.5120 40 1 0.8490 -2.5228 0.5118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568916695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:46 Heat of formation + Delta-G solvation = 40.191523 kcal Electronic energy + Delta-G solvation = -20145.135843 eV Core-core repulsion = 16961.553087 eV Total energy + Delta-G solvation = -3183.582755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58626 -39.12126 -36.30680 -34.73523 -33.26778 -32.61026 -31.81468 -30.89651 -28.06289 -26.65495 -26.37743 -24.08470 -22.27163 -21.54525 -20.31917 -19.85169 -18.99082 -17.64625 -17.51831 -16.01292 -15.95935 -15.77357 -15.04529 -14.60376 -14.48607 -14.10835 -13.78860 -13.47166 -13.34699 -13.23831 -13.05871 -12.91178 -12.78224 -12.65240 -12.33577 -12.13112 -12.00232 -11.75280 -11.30709 -10.86096 -10.62175 -10.14555 -9.90306 -9.59902 -9.25145 -9.00809 -8.83329 -8.70834 -8.35643 -7.23269 -5.76625 -3.12602 1.59937 2.20303 2.23322 2.52976 3.39411 3.43111 3.46789 3.54830 3.59596 4.31801 4.48407 4.60187 4.63634 4.67025 4.86803 4.89929 4.99706 5.12920 5.24960 5.31530 5.40937 5.53309 5.61271 5.67138 5.69455 5.74097 5.83172 5.94376 6.02510 6.38787 6.47272 6.53525 6.56440 6.80449 6.86193 6.95805 7.08183 7.66415 7.99265 8.37440 8.42293 9.21136 9.93388 10.13351 11.41612 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.003029 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.336986 B = 9243.135388 C = 9979.750388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.103 3.897 3 C -0.237 4.237 4 C 0.591 3.409 5 O -0.557 6.557 6 N -0.721 5.721 7 C 0.156 3.844 8 C -0.193 4.193 9 C -0.119 4.119 10 C 0.178 3.822 11 N -0.753 5.753 12 C -0.246 4.246 13 H 0.091 0.909 14 C 0.005 3.995 15 N -0.934 5.934 16 Si 0.885 3.115 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.165 4.165 21 C -0.020 4.020 22 N -0.447 5.447 23 C 0.067 3.933 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.402 0.598 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.147 0.853 37 H 0.167 0.833 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -24.160 10.422 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.014 4.014 3 C -0.247 4.247 4 C 0.380 3.620 5 O -0.438 6.438 6 N -0.372 5.372 7 C 0.033 3.967 8 C -0.212 4.212 9 C -0.138 4.138 10 C 0.051 3.949 11 N -0.399 5.399 12 C -0.376 4.376 13 H 0.109 0.891 14 C -0.191 4.191 15 N -0.582 5.582 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.189 4.189 21 C -0.145 4.145 22 N -0.124 5.124 23 C -0.074 4.074 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.237 0.763 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.165 0.835 37 H 0.185 0.815 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.600 -24.131 10.461 30.579 hybrid contribution 0.344 -0.921 -1.094 1.471 sum -15.256 -25.052 9.367 30.791 Atomic orbital electron populations 1.20565 0.87131 1.03978 1.03375 1.20312 0.93743 0.85180 1.02124 1.20120 0.93279 0.91958 1.19319 1.17338 0.85233 0.84063 0.75372 1.90714 1.16699 1.84529 1.51815 1.45805 1.10035 1.05749 1.75573 1.20292 0.95080 0.79137 1.02177 1.22764 0.99127 0.98200 1.01152 1.23337 0.98170 0.95813 0.96502 1.19785 0.89717 0.95997 0.89364 1.42658 1.31546 1.53854 1.11833 1.19073 1.00509 1.18602 0.99381 0.89131 1.24674 0.97318 0.99611 0.97524 1.69699 1.20329 1.44137 1.24006 0.86536 0.78217 0.81062 0.82685 1.21016 1.21676 1.20237 1.22073 0.95871 0.93637 1.07289 1.21702 0.85328 0.96306 1.11203 1.43554 1.06081 1.06096 1.56654 1.22093 1.01693 0.80081 1.03561 0.90510 0.92066 0.88023 0.76301 0.91040 0.91357 0.86569 0.87325 0.94326 0.94888 0.80503 0.93020 0.83509 0.81537 0.90645 0.89564 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.52 36.00 0.34 -0.50 16 2 C 0.10 1.11 6.89 -81.89 -0.56 0.55 16 3 C -0.24 -2.97 6.29 -103.35 -0.65 -3.62 16 4 C 0.59 8.48 7.81 -12.59 -0.10 8.38 16 5 O -0.56 -9.33 14.81 5.25 0.08 -9.25 16 6 N -0.72 -9.28 5.54 -62.61 -0.35 -9.63 16 7 C 0.16 2.04 6.11 -5.19 -0.03 2.00 16 8 C -0.19 -2.60 9.24 -36.02 -0.33 -2.94 16 9 C -0.12 -1.87 9.24 -36.02 -0.33 -2.20 16 10 C 0.18 3.47 6.70 -5.19 -0.03 3.43 16 11 N -0.75 -18.30 5.40 -61.08 -0.33 -18.63 16 12 C -0.25 -7.08 10.47 -15.06 -0.16 -7.24 16 13 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 14 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 15 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 16 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 20 C -0.16 -1.71 10.56 -37.50 -0.40 -2.11 16 21 C -0.02 -0.17 11.34 -16.82 -0.19 -0.36 16 22 N -0.45 -3.76 3.09 -119.89 -0.37 -4.13 16 23 C 0.07 0.28 10.82 59.84 0.65 0.92 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16 26 H 0.10 1.12 6.47 -51.93 -0.34 0.78 16 27 H 0.40 4.54 7.59 -40.82 -0.31 4.23 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 30 H 0.12 1.48 7.84 -52.49 -0.41 1.07 16 31 H 0.11 1.64 7.84 -52.49 -0.41 1.23 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.64 7.79 -51.93 -0.40 0.24 16 34 H 0.36 8.62 5.52 -40.82 -0.23 8.40 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.15 1.30 7.70 -52.49 -0.40 0.89 16 37 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 0.20 8.13 -51.93 -0.42 -0.22 16 40 H 0.08 0.26 6.88 -51.93 -0.36 -0.10 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -35.55 339.22 -7.44 -42.99 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.75 Total: 8.28 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.89 Total: -3.62 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.27 Total: -61.22 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.55 -7.44 -42.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568916695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.182 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds