Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36762 * 125.80401 * 2 1 4 4 C 1.47262 * 126.94445 * 359.97438 * 3 2 1 5 5 O 1.21629 * 119.99583 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00578 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00215 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46804 * 180.02562 * 7 6 4 9 9 C 1.30994 * 119.99826 * 125.27541 * 8 7 6 10 10 C 1.50702 * 120.00204 * 179.71900 * 9 8 7 11 11 N 1.46500 * 109.46883 * 124.99760 * 10 9 8 12 12 C 1.36943 * 119.99537 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00422 * 180.02562 * 14 12 11 16 16 Si 1.86810 * 119.99902 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47261 * 89.99809 * 16 14 12 18 18 H 1.48494 * 109.47034 * 210.00404 * 16 14 12 19 19 H 1.48509 * 109.46803 * 330.00181 * 16 14 12 20 20 C 1.46687 * 106.11624 * 180.24627 * 3 2 1 21 21 C 1.34491 * 106.33351 * 359.63062 * 20 3 2 22 22 N 1.34664 * 125.79802 * 180.02562 * 2 1 3 23 23 C 1.46496 * 124.85101 * 0.02562 * 22 2 1 24 24 H 1.09007 * 109.47427 * 89.99879 * 1 2 3 25 25 H 1.08998 * 109.47412 * 209.99806 * 1 2 3 26 26 H 1.09001 * 109.47149 * 329.99717 * 1 2 3 27 27 H 0.96997 * 119.99865 * 359.97438 * 6 4 3 28 28 H 1.08998 * 109.47066 * 59.99906 * 7 6 4 29 29 H 1.09001 * 109.47002 * 300.00046 * 7 6 4 30 30 H 1.08002 * 119.99761 * 304.99301 * 8 7 6 31 31 H 1.08002 * 120.00350 * 359.72370 * 9 8 7 32 32 H 1.08998 * 109.47600 * 245.00508 * 10 9 8 33 33 H 1.09004 * 109.46937 * 5.00335 * 10 9 8 34 34 H 0.96999 * 120.00357 * 0.02562 * 11 10 9 35 35 H 0.96992 * 120.00213 * 179.97438 * 15 14 12 36 36 H 1.07998 * 126.83515 * 179.74993 * 20 3 2 37 37 H 1.07993 * 125.57340 * 180.08338 * 21 20 3 38 38 H 1.09006 * 109.47255 * 89.99993 * 23 22 2 39 39 H 1.08998 * 109.47089 * 209.99788 * 23 22 2 40 40 H 1.08991 * 109.47459 * 329.99816 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8703 2.5155 -0.0005 5 8 0.6840 2.7839 -0.0015 6 7 2.7850 3.5053 0.0001 7 6 2.3505 4.9044 -0.0010 8 6 3.5584 5.8055 -0.0007 9 6 3.6922 6.7218 -0.9273 10 6 4.8970 7.6271 -0.9234 11 7 5.5727 7.5463 -2.2207 12 6 6.7010 8.2870 -2.4522 13 1 7.0929 8.9304 -1.6783 14 6 7.3411 8.2109 -3.6816 15 7 8.4258 8.9224 -3.9040 16 14 6.6636 7.0976 -5.0200 17 1 5.6942 7.8558 -5.8510 18 1 7.7784 6.6164 -5.8748 19 1 5.9796 5.9355 -4.3979 20 6 3.6882 0.6150 -0.0061 21 6 3.6095 -0.7276 -0.0008 22 7 2.2947 -1.0922 -0.0005 23 6 1.8092 -2.4744 -0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.7311 3.2914 0.0012 28 1 1.7510 5.0994 0.8882 29 1 1.7530 5.0986 -0.8918 30 1 4.3114 5.6989 0.7661 31 1 2.9392 6.8285 -1.6941 32 1 4.5793 8.6540 -0.7424 33 1 5.5834 7.3151 -0.1361 34 1 5.2209 6.9682 -2.9156 35 1 8.8732 8.8689 -4.7629 36 1 4.5890 1.2107 -0.0115 37 1 4.4496 -1.4061 -0.0019 38 1 1.6892 -2.8166 -1.0296 39 1 2.5284 -3.1125 0.5120 40 1 0.8490 -2.5228 0.5118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568916695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = 15.658242 kcal Electronic energy + Delta-G solvation = -20146.199686 eV Core-core repulsion = 16961.553087 eV Total energy + Delta-G solvation = -3184.646598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.28101 -40.16314 -37.74458 -36.24130 -34.46937 -33.68866 -32.73538 -32.51593 -29.30477 -27.44794 -27.19433 -25.56600 -23.61392 -22.90196 -21.33490 -20.87537 -19.98103 -19.49862 -18.36434 -16.94664 -16.78199 -16.65897 -16.55937 -16.12816 -15.77985 -15.20282 -15.01010 -14.88064 -14.34294 -14.20892 -14.04642 -13.89004 -13.82291 -13.60966 -13.45994 -13.14068 -12.98249 -12.84452 -12.77183 -12.46084 -12.19304 -11.95568 -11.77980 -11.12148 -10.95960 -10.35507 -9.99234 -9.51108 -9.30367 -9.10643 -8.04083 -5.38352 0.74125 1.04793 1.38686 1.41382 1.49087 1.51085 1.93221 2.47742 2.57563 2.61419 3.27458 3.65572 3.83815 3.90453 3.97701 4.03176 4.11942 4.19604 4.39974 4.42103 4.48503 4.64703 4.67246 4.71715 4.73458 4.75360 4.90404 4.97035 4.99609 5.08073 5.25966 5.45512 5.65424 5.71037 5.80174 5.84470 6.10070 6.19977 6.36234 6.67421 7.05972 7.34275 7.81315 8.01207 9.17252 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.003029 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.336986 B = 9243.135388 C = 9979.750388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.274 4.274 4 C 0.584 3.416 5 O -0.591 6.591 6 N -0.717 5.717 7 C 0.159 3.841 8 C -0.157 4.157 9 C -0.136 4.136 10 C 0.177 3.823 11 N -0.757 5.757 12 C -0.239 4.239 13 H 0.059 0.941 14 C -0.063 4.063 15 N -0.983 5.983 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.253 1.253 20 C -0.186 4.186 21 C -0.012 4.012 22 N -0.443 5.443 23 C 0.058 3.942 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.410 0.590 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.367 0.633 35 H 0.259 0.741 36 H 0.155 0.845 37 H 0.200 0.800 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.868 -27.395 10.564 33.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C -0.284 4.284 4 C 0.375 3.625 5 O -0.474 6.474 6 N -0.367 5.367 7 C 0.036 3.964 8 C -0.176 4.176 9 C -0.156 4.156 10 C 0.051 3.949 11 N -0.403 5.403 12 C -0.370 4.370 13 H 0.077 0.923 14 C -0.255 4.255 15 N -0.633 5.633 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.177 1.177 20 C -0.209 4.209 21 C -0.138 4.138 22 N -0.118 5.118 23 C -0.082 4.082 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.246 0.754 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.200 0.800 35 H 0.068 0.932 36 H 0.173 0.827 37 H 0.217 0.783 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.616 -27.399 10.642 33.765 hybrid contribution 0.647 0.040 -0.992 1.184 sum -15.970 -27.359 9.650 33.116 Atomic orbital electron populations 1.20521 0.86397 1.04237 1.03495 1.20554 0.94509 0.85731 1.01704 1.20216 0.94945 0.91391 1.21872 1.17720 0.84887 0.85111 0.74741 1.90686 1.17977 1.85146 1.53569 1.45740 1.10387 1.05389 1.75215 1.20226 0.94721 0.79292 1.02206 1.22811 0.98706 0.96256 0.99870 1.23012 0.97451 0.96704 0.98407 1.19872 0.90883 0.96950 0.87163 1.42686 1.30558 1.53225 1.13818 1.19070 1.01452 1.17929 0.98517 0.92328 1.25526 0.97876 1.01773 1.00296 1.69878 1.22235 1.46433 1.24746 0.85386 0.77491 0.79580 0.79197 1.20427 1.21942 1.17743 1.22282 0.95301 0.94788 1.08565 1.22242 0.86234 0.96239 1.09080 1.43859 1.05853 1.07133 1.54995 1.22444 1.02958 0.77920 1.04869 0.90394 0.89080 0.90444 0.75369 0.90461 0.92009 0.85336 0.86599 0.94624 0.94637 0.80010 0.93208 0.82707 0.78275 0.89524 0.87326 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.52 71.23 0.68 -0.84 16 2 C 0.09 1.90 6.89 41.78 0.29 2.19 16 3 C -0.27 -6.69 6.29 -19.04 -0.12 -6.81 16 4 C 0.58 16.69 7.81 86.62 0.68 17.36 16 5 O -0.59 -20.05 14.81 -4.12 -0.06 -20.12 16 6 N -0.72 -17.75 5.54 -470.26 -2.61 -20.36 16 7 C 0.16 3.93 6.11 85.63 0.52 4.45 16 8 C -0.16 -3.92 9.24 25.65 0.24 -3.68 16 9 C -0.14 -4.06 9.24 25.65 0.24 -3.82 16 10 C 0.18 6.74 6.70 85.63 0.57 7.31 16 11 N -0.76 -36.17 5.40 -347.16 -1.87 -38.04 16 12 C -0.24 -13.90 10.47 84.03 0.88 -13.02 16 13 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 14 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 15 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 16 Si 0.96 46.10 27.74 68.60 1.90 48.01 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 19 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 20 C -0.19 -3.57 10.56 23.62 0.25 -3.32 16 21 C -0.01 -0.17 11.34 83.12 0.94 0.78 16 22 N -0.44 -6.27 3.09 -533.22 -1.65 -7.91 16 23 C 0.06 0.27 10.82 127.77 1.38 1.65 16 24 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.09 0.92 6.92 -2.39 -0.02 0.91 16 26 H 0.08 1.73 6.47 -2.39 -0.02 1.71 16 27 H 0.41 8.71 7.59 -92.71 -0.70 8.01 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.64 7.79 -2.39 -0.02 1.63 16 30 H 0.13 2.94 7.84 -2.91 -0.02 2.91 16 31 H 0.12 3.31 7.84 -2.91 -0.02 3.28 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.34 7.79 -2.38 -0.02 1.33 16 34 H 0.37 16.76 5.52 -92.71 -0.51 16.25 16 35 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.16 2.51 7.70 -2.91 -0.02 2.48 16 37 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 39 H 0.11 0.05 8.13 -2.39 -0.02 0.03 16 40 H 0.10 0.24 6.88 -2.39 -0.02 0.22 16 Total: -1.00 -78.18 339.22 2.81 -75.37 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.22 Total: 27.39 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 7.01 Total: -1.06 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -5.82 Total: -129.59 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.06 Total: -20.12 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.01 kcal Total: -78.18 2.81 -75.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568916695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.027 kcal (2) G-P(sol) polarization free energy of solvation -78.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds