Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38631 * 120.47579 * 2 1 4 4 C 1.38579 * 118.49234 * 179.70948 * 3 2 1 5 5 C 1.38607 * 119.34994 * 0.58308 * 4 3 2 6 6 N 1.31491 * 120.89990 * 359.67344 * 5 4 3 7 7 C 1.32754 * 121.64539 * 0.03300 * 6 5 4 8 8 C 1.48167 * 119.72281 * 180.02562 * 7 6 5 9 9 O 1.21515 * 119.99904 * 104.25726 * 8 7 6 10 10 N 1.34777 * 119.99785 * 284.25444 * 8 7 6 11 11 C 1.46498 * 120.00009 * 5.01897 * 10 8 7 12 12 C 1.46493 * 120.00009 * 185.02044 * 10 8 7 13 13 C 1.52996 * 109.47382 * 89.99825 * 12 10 8 14 14 C 1.53007 * 109.47334 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46870 * 180.02562 * 14 13 12 16 16 C 1.36941 * 119.99562 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00401 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99647 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00414 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47193 * 90.00099 * 20 18 16 22 22 H 1.48501 * 109.47471 * 210.00456 * 20 18 16 23 23 H 1.48501 * 109.47221 * 330.00157 * 20 18 16 24 24 H 1.08997 * 109.47253 * 264.59011 * 1 2 3 25 25 H 1.08995 * 109.46740 * 144.58214 * 1 2 3 26 26 H 1.09001 * 109.46746 * 24.58680 * 1 2 3 27 27 H 1.08007 * 120.75178 * 359.97393 * 3 2 1 28 28 H 1.08004 * 120.32801 * 180.28004 * 4 3 2 29 29 H 1.08002 * 119.54744 * 179.70179 * 5 4 3 30 30 H 1.09000 * 109.47117 * 84.81690 * 11 10 8 31 31 H 1.08999 * 109.47462 * 204.81675 * 11 10 8 32 32 H 1.09005 * 109.47518 * 324.81663 * 11 10 8 33 33 H 1.09004 * 109.47050 * 210.00142 * 12 10 8 34 34 H 1.09004 * 109.47321 * 330.00134 * 12 10 8 35 35 H 1.09004 * 109.47287 * 300.00172 * 13 12 10 36 36 H 1.09008 * 109.47311 * 60.00165 * 13 12 10 37 37 H 1.09000 * 109.47016 * 299.99752 * 14 13 12 38 38 H 1.08994 * 109.47018 * 59.99917 * 14 13 12 39 39 H 0.96999 * 120.00788 * 0.02562 * 15 14 13 40 40 H 0.97000 * 119.99995 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1948 0.0000 4 6 3.5951 1.1468 0.0062 5 6 4.2323 -0.0841 -0.0002 6 7 3.5407 -1.2024 -0.0055 7 6 2.2132 -1.2004 -0.0057 8 6 1.4766 -2.4860 -0.0112 9 8 0.9495 -2.8887 1.0069 10 7 1.3912 -3.2088 -1.1456 11 6 2.1173 -2.7803 -2.3436 12 6 0.5722 -4.4229 -1.1806 13 6 -0.8535 -4.0645 -1.6046 14 6 -1.7090 -5.3325 -1.6405 15 7 -3.0739 -4.9892 -2.0471 16 6 -4.0246 -5.9694 -2.1498 17 1 -3.7682 -6.9955 -1.9315 18 6 -5.3181 -5.6441 -2.5346 19 7 -5.6307 -4.3936 -2.8012 20 14 -6.6149 -6.9813 -2.6754 21 1 -7.3078 -7.1381 -1.3714 22 1 -7.6025 -6.6053 -3.7187 23 1 -5.9652 -8.2636 -3.0480 24 1 -0.3633 -0.0969 1.0230 25 1 -0.3632 -0.8375 -0.5956 26 1 -0.3633 0.9345 -0.4276 27 1 1.6902 2.1415 -0.0004 28 1 4.1724 2.0596 0.0109 29 1 5.3115 -0.1252 -0.0003 30 1 3.1400 -3.1551 -2.3022 31 1 1.6212 -3.1755 -3.2301 32 1 2.1310 -1.6913 -2.3902 33 1 0.9975 -5.1276 -1.8953 34 1 0.5532 -4.8771 -0.1899 35 1 -1.2788 -3.3598 -0.8900 36 1 -0.8346 -3.6103 -2.5954 37 1 -1.2839 -6.0374 -2.3550 38 1 -1.7278 -5.7862 -0.6497 39 1 -3.3043 -4.0677 -2.2436 40 1 -6.5346 -4.1663 -3.0696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569192674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = 9.530798 kcal Electronic energy + Delta-G solvation = -21012.783279 eV Core-core repulsion = 17827.870975 eV Total energy + Delta-G solvation = -3184.912304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00260 -39.18845 -36.18248 -34.80147 -33.93359 -32.66307 -31.90917 -29.79678 -27.75370 -26.94574 -25.83693 -24.19371 -22.78769 -22.33302 -20.95518 -19.83900 -17.75873 -17.12000 -16.98593 -16.45980 -15.95997 -15.18623 -14.82859 -14.58232 -14.37657 -14.24222 -13.64735 -13.46860 -13.23087 -13.03216 -12.99871 -12.94490 -12.73368 -12.52941 -12.00312 -11.90900 -11.86460 -10.92037 -10.82938 -10.74591 -10.39436 -10.32163 -10.11489 -10.04359 -9.71268 -9.64283 -9.20332 -8.83669 -8.69365 -6.88476 -5.73123 -3.01624 0.58687 0.90822 2.42134 2.81989 3.38376 3.46454 3.51211 3.52934 3.98537 4.35161 4.44138 4.62085 4.62686 4.65960 4.96959 5.02606 5.15808 5.21989 5.28268 5.35971 5.45650 5.47797 5.58439 5.60024 5.70794 5.71921 5.85752 5.90815 5.93496 6.09156 6.27224 6.31363 6.40638 6.51619 6.87907 6.90366 7.24195 7.52291 7.73470 8.01813 8.45947 9.56843 10.15283 10.49959 11.50011 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.003218 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.069213 B = 8699.752951 C = 9129.959112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.095 4.095 3 C -0.078 4.078 4 C -0.157 4.157 5 C 0.092 3.908 6 N -0.455 5.455 7 C 0.095 3.905 8 C 0.578 3.422 9 O -0.519 6.519 10 N -0.602 5.602 11 C 0.083 3.917 12 C 0.117 3.883 13 C -0.140 4.140 14 C 0.156 3.844 15 N -0.733 5.733 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.375 12.804 2.370 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 C -0.104 4.104 4 C -0.177 4.177 5 C -0.067 4.067 6 N -0.165 5.165 7 C -0.044 4.044 8 C 0.363 3.637 9 O -0.394 6.394 10 N -0.334 5.334 11 C -0.060 4.060 12 C -0.005 4.005 13 C -0.178 4.178 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.212 4.212 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.178 0.822 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.438 11.575 2.897 24.534 hybrid contribution -1.137 0.591 -0.234 1.302 sum 20.301 12.165 2.663 23.816 Atomic orbital electron populations 1.20864 0.89226 1.03702 1.03870 1.20878 0.98034 0.92564 0.98238 1.21510 0.94169 0.97964 0.96749 1.22317 0.95229 0.99797 1.00387 1.22797 1.00394 0.87333 0.96207 1.67652 1.06532 1.31730 1.10579 1.20959 0.90320 0.93461 0.99668 1.17890 0.79504 0.82742 0.83574 1.90831 1.47018 1.69423 1.32093 1.47779 1.48012 1.26339 1.11268 1.21761 0.96694 1.00200 0.87325 1.21588 0.90421 0.84976 1.03524 1.22083 0.94011 1.00134 1.01616 1.20540 0.86045 0.93452 0.97146 1.42348 1.04902 1.08352 1.82152 1.19254 0.89869 0.89613 1.38172 0.91130 1.24749 0.97508 0.96352 1.02542 1.69666 1.19360 1.16143 1.53207 0.86172 0.81694 0.80918 0.77315 1.21711 1.21791 1.20754 0.89761 0.90702 0.90575 0.84094 0.84314 0.82155 0.92066 0.90255 0.92033 0.90042 0.89412 0.91641 0.91861 0.96295 0.96096 0.78340 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.55 36.01 0.34 -0.96 16 2 C -0.09 -1.05 5.93 -104.09 -0.62 -1.67 16 3 C -0.08 -0.64 9.83 -39.31 -0.39 -1.02 16 4 C -0.16 -1.10 10.11 -39.32 -0.40 -1.50 16 5 C 0.09 0.78 11.18 -17.56 -0.20 0.59 16 6 N -0.45 -5.51 10.23 -9.79 -0.10 -5.61 16 7 C 0.10 1.25 4.69 -83.01 -0.39 0.87 16 8 C 0.58 8.93 5.86 -12.18 -0.07 8.86 16 9 O -0.52 -9.87 16.66 5.35 0.09 -9.78 16 10 N -0.60 -8.14 2.87 -182.58 -0.52 -8.66 16 11 C 0.08 0.85 10.18 59.85 0.61 1.46 16 12 C 0.12 1.67 5.42 -4.05 -0.02 1.65 16 13 C -0.14 -2.37 5.65 -26.73 -0.15 -2.52 16 14 C 0.16 3.26 6.26 -4.04 -0.03 3.23 16 15 N -0.73 -19.34 5.60 -59.91 -0.34 -19.67 16 16 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 20 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.95 7.28 -51.93 -0.38 0.57 16 26 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 27 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 28 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 29 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 32 H 0.06 0.61 6.99 -51.93 -0.36 0.24 16 33 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.09 1.37 7.36 -51.93 -0.38 0.99 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 40 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -35.21 342.09 -7.61 -42.82 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.04 Total: 4.65 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.55 Total: 1.40 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.24 Total: -62.06 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.21 -7.61 -42.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569192674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.352 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds