Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38631 * 120.47579 * 2 1 4 4 C 1.38579 * 118.49234 * 179.70948 * 3 2 1 5 5 C 1.38607 * 119.34994 * 0.58308 * 4 3 2 6 6 N 1.31491 * 120.89990 * 359.67344 * 5 4 3 7 7 C 1.32754 * 121.64539 * 0.03300 * 6 5 4 8 8 C 1.48167 * 119.72281 * 180.02562 * 7 6 5 9 9 O 1.21515 * 119.99904 * 104.25726 * 8 7 6 10 10 N 1.34777 * 119.99785 * 284.25444 * 8 7 6 11 11 C 1.46498 * 120.00009 * 5.01897 * 10 8 7 12 12 C 1.46493 * 120.00009 * 185.02044 * 10 8 7 13 13 C 1.52996 * 109.47382 * 89.99825 * 12 10 8 14 14 C 1.53007 * 109.47334 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46870 * 180.02562 * 14 13 12 16 16 C 1.36941 * 119.99562 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00401 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99647 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00414 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47193 * 90.00099 * 20 18 16 22 22 H 1.48501 * 109.47471 * 210.00456 * 20 18 16 23 23 H 1.48501 * 109.47221 * 330.00157 * 20 18 16 24 24 H 1.08997 * 109.47253 * 264.59011 * 1 2 3 25 25 H 1.08995 * 109.46740 * 144.58214 * 1 2 3 26 26 H 1.09001 * 109.46746 * 24.58680 * 1 2 3 27 27 H 1.08007 * 120.75178 * 359.97393 * 3 2 1 28 28 H 1.08004 * 120.32801 * 180.28004 * 4 3 2 29 29 H 1.08002 * 119.54744 * 179.70179 * 5 4 3 30 30 H 1.09000 * 109.47117 * 84.81690 * 11 10 8 31 31 H 1.08999 * 109.47462 * 204.81675 * 11 10 8 32 32 H 1.09005 * 109.47518 * 324.81663 * 11 10 8 33 33 H 1.09004 * 109.47050 * 210.00142 * 12 10 8 34 34 H 1.09004 * 109.47321 * 330.00134 * 12 10 8 35 35 H 1.09004 * 109.47287 * 300.00172 * 13 12 10 36 36 H 1.09008 * 109.47311 * 60.00165 * 13 12 10 37 37 H 1.09000 * 109.47016 * 299.99752 * 14 13 12 38 38 H 1.08994 * 109.47018 * 59.99917 * 14 13 12 39 39 H 0.96999 * 120.00788 * 0.02562 * 15 14 13 40 40 H 0.97000 * 119.99995 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1948 0.0000 4 6 3.5951 1.1468 0.0062 5 6 4.2323 -0.0841 -0.0002 6 7 3.5407 -1.2024 -0.0055 7 6 2.2132 -1.2004 -0.0057 8 6 1.4766 -2.4860 -0.0112 9 8 0.9495 -2.8887 1.0069 10 7 1.3912 -3.2088 -1.1456 11 6 2.1173 -2.7803 -2.3436 12 6 0.5722 -4.4229 -1.1806 13 6 -0.8535 -4.0645 -1.6046 14 6 -1.7090 -5.3325 -1.6405 15 7 -3.0739 -4.9892 -2.0471 16 6 -4.0246 -5.9694 -2.1498 17 1 -3.7682 -6.9955 -1.9315 18 6 -5.3181 -5.6441 -2.5346 19 7 -5.6307 -4.3936 -2.8012 20 14 -6.6149 -6.9813 -2.6754 21 1 -7.3078 -7.1381 -1.3714 22 1 -7.6025 -6.6053 -3.7187 23 1 -5.9652 -8.2636 -3.0480 24 1 -0.3633 -0.0969 1.0230 25 1 -0.3632 -0.8375 -0.5956 26 1 -0.3633 0.9345 -0.4276 27 1 1.6902 2.1415 -0.0004 28 1 4.1724 2.0596 0.0109 29 1 5.3115 -0.1252 -0.0003 30 1 3.1400 -3.1551 -2.3022 31 1 1.6212 -3.1755 -3.2301 32 1 2.1310 -1.6913 -2.3902 33 1 0.9975 -5.1276 -1.8953 34 1 0.5532 -4.8771 -0.1899 35 1 -1.2788 -3.3598 -0.8900 36 1 -0.8346 -3.6103 -2.5954 37 1 -1.2839 -6.0374 -2.3550 38 1 -1.7278 -5.7862 -0.6497 39 1 -3.3043 -4.0677 -2.2436 40 1 -6.5346 -4.1663 -3.0696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569192674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = -14.849449 kcal Electronic energy + Delta-G solvation = -21013.840486 eV Core-core repulsion = 17827.870975 eV Total energy + Delta-G solvation = -3185.969511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88741 -40.18421 -37.60252 -36.46827 -34.70043 -34.17370 -33.04989 -31.52213 -28.61500 -28.05710 -27.14004 -25.55430 -24.20919 -23.20874 -22.53063 -20.85804 -19.17107 -18.73890 -17.93115 -17.56071 -16.81436 -16.50967 -16.14188 -16.02646 -15.52715 -15.26333 -15.19093 -14.98448 -14.47628 -14.11812 -14.00597 -13.82374 -13.62790 -13.50916 -13.42304 -13.19042 -12.79409 -12.77064 -12.74356 -12.44133 -12.07371 -11.86318 -11.82047 -11.38469 -10.95728 -10.79906 -10.49568 -9.97094 -9.83749 -9.03568 -7.96971 -5.26948 -0.15165 0.23792 1.31157 1.46474 1.49182 1.57528 1.79944 2.55260 2.66325 3.11433 3.36507 3.59341 3.79120 3.82383 3.93699 3.99131 4.04843 4.13169 4.28968 4.40557 4.47264 4.47890 4.55709 4.57255 4.60661 4.69248 4.70246 4.80416 4.84991 5.03138 5.11222 5.19133 5.24241 5.27136 5.41870 5.47440 5.64345 6.15997 6.25146 6.77855 6.91317 7.30870 8.05428 8.29412 9.26854 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.003218 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.069213 B = 8699.752951 C = 9129.959112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 C -0.075 4.075 4 C -0.139 4.139 5 C 0.087 3.913 6 N -0.482 5.482 7 C 0.067 3.933 8 C 0.572 3.428 9 O -0.571 6.571 10 N -0.600 5.600 11 C 0.083 3.917 12 C 0.124 3.876 13 C -0.121 4.121 14 C 0.155 3.845 15 N -0.749 5.749 16 C -0.250 4.250 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.978 3.022 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.267 1.267 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.172 0.828 28 H 0.182 0.818 29 H 0.193 0.807 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.015 0.985 39 H 0.373 0.627 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.311 13.853 1.536 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.113 4.113 3 C -0.101 4.101 4 C -0.158 4.158 5 C -0.072 4.072 6 N -0.192 5.192 7 C -0.071 4.071 8 C 0.358 3.642 9 O -0.450 6.450 10 N -0.331 5.331 11 C -0.059 4.059 12 C 0.001 3.999 13 C -0.160 4.160 14 C 0.028 3.972 15 N -0.391 5.391 16 C -0.381 4.381 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.192 1.192 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.190 0.810 28 H 0.199 0.801 29 H 0.209 0.791 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.204 0.796 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 23.422 12.603 2.042 26.676 hybrid contribution -1.601 0.344 0.038 1.638 sum 21.821 12.948 2.080 25.458 Atomic orbital electron populations 1.20812 0.89924 1.03885 1.02723 1.20967 0.97802 0.93237 0.99280 1.21908 0.94935 0.97843 0.95368 1.22784 0.94896 1.00779 0.97366 1.23449 1.01778 0.87088 0.94919 1.67590 1.06057 1.33824 1.11774 1.20639 0.91039 0.92632 1.02750 1.18460 0.78967 0.83551 0.83187 1.90779 1.49365 1.70902 1.33934 1.47878 1.47446 1.25735 1.11991 1.21939 0.97052 1.00661 0.86262 1.21445 0.89179 0.85934 1.03314 1.21863 0.94968 0.97774 1.01349 1.20687 0.84278 0.95431 0.96776 1.42587 1.06709 1.07511 1.82320 1.19678 0.90705 0.90383 1.37348 0.90502 1.25638 0.99739 0.98670 1.02871 1.69827 1.19619 1.18170 1.54498 0.85082 0.78694 0.78613 0.77019 1.21485 1.21863 1.19186 0.91140 0.93413 0.87941 0.81045 0.80099 0.79061 0.90861 0.88726 0.91624 0.86975 0.91142 0.94122 0.91101 0.94688 0.96722 0.79565 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.55 71.24 0.68 -1.95 16 2 C -0.11 -2.39 5.93 -19.52 -0.12 -2.51 16 3 C -0.08 -1.01 9.83 22.45 0.22 -0.79 16 4 C -0.14 -1.39 10.11 22.44 0.23 -1.16 16 5 C 0.09 1.24 11.18 84.83 0.95 2.19 16 6 N -0.48 -11.19 10.23 -184.90 -1.89 -13.08 16 7 C 0.07 1.78 4.69 41.89 0.20 1.98 16 8 C 0.57 18.50 5.86 86.88 0.51 19.01 16 9 O -0.57 -23.31 16.66 -3.76 -0.06 -23.37 16 10 N -0.60 -16.43 2.87 -849.84 -2.44 -18.87 16 11 C 0.08 1.60 10.18 127.77 1.30 2.90 16 12 C 0.12 3.57 5.42 86.38 0.47 4.04 16 13 C -0.12 -4.20 5.65 30.60 0.17 -4.03 16 14 C 0.16 6.53 6.26 86.38 0.54 7.07 16 15 N -0.75 -40.20 5.60 -343.45 -1.92 -42.13 16 16 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 19 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 20 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 1.31 7.28 -2.39 -0.02 1.29 16 26 H 0.10 1.65 8.06 -2.39 -0.02 1.63 16 27 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 28 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 29 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.53 8.03 -2.39 -0.02 1.51 16 32 H 0.07 1.24 6.99 -2.38 -0.02 1.22 16 33 H 0.11 2.53 8.07 -2.38 -0.02 2.52 16 34 H 0.07 2.30 7.36 -2.38 -0.02 2.28 16 35 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.37 21.20 7.67 -92.71 -0.71 20.49 16 40 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.08 342.09 2.77 -76.31 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.32 Total: 23.58 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.46 Total: 9.00 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -5.97 Total: -134.67 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -79.08 2.77 -76.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569192674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.464 kcal (2) G-P(sol) polarization free energy of solvation -79.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds