Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39836 * 126.45668 * 2 1 4 4 C 1.35450 * 107.86189 * 180.26526 * 3 2 1 5 5 N 1.35531 * 108.87683 * 359.74464 * 4 3 2 6 6 H 0.96994 * 125.68391 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.63787 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.22878 * 179.97438 * 7 5 4 9 9 O 1.21704 * 119.99568 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00608 * 0.03388 * 8 7 5 11 11 C 1.46500 * 120.00509 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46593 * 324.99907 * 11 10 8 13 13 C 1.52998 * 109.47003 * 204.99732 * 11 10 8 14 14 N 1.46500 * 109.47071 * 55.00255 * 13 11 10 15 15 C 1.36942 * 120.00244 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00458 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00317 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47262 * 89.99995 * 19 17 15 21 21 H 1.48505 * 109.47186 * 210.00479 * 19 17 15 22 22 H 1.48504 * 109.46827 * 330.00184 * 19 17 15 23 23 C 1.52996 * 109.47073 * 84.99721 * 11 10 8 24 24 C 1.53002 * 117.49888 * 231.25527 * 23 11 10 25 25 C 1.53000 * 117.50107 * 299.91289 * 23 11 10 26 26 H 1.09001 * 109.46706 * 270.18300 * 1 2 3 27 27 H 1.09004 * 109.46671 * 30.17820 * 1 2 3 28 28 H 1.08996 * 109.46990 * 150.18008 * 1 2 3 29 29 H 1.07998 * 126.06926 * 0.02562 * 3 2 1 30 30 H 1.08002 * 125.56322 * 179.72361 * 4 3 2 31 31 H 0.97006 * 119.99568 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.47096 * 174.99683 * 13 11 10 33 33 H 1.08996 * 109.47337 * 294.99987 * 13 11 10 34 34 H 0.96999 * 120.00125 * 359.97438 * 14 13 11 35 35 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54951 * 85.58501 * 23 11 10 37 37 H 1.09000 * 117.49996 * 215.00804 * 24 23 11 38 38 H 1.08999 * 117.49664 * 0.02562 * 24 23 11 39 39 H 1.09008 * 117.49673 * 359.97438 * 25 23 11 40 40 H 1.08999 * 117.49959 * 144.99502 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0060 5 7 3.6285 -0.6625 -0.0040 6 1 4.4191 -1.2244 -0.0069 7 6 2.3263 -1.1088 0.0039 8 6 1.8899 -2.5092 0.0079 9 8 0.7026 -2.7765 0.0145 10 7 2.8036 -3.4999 0.0044 11 6 2.3678 -4.8986 0.0089 12 1 1.4593 -4.9940 0.6036 13 6 3.4675 -5.7735 0.6138 14 7 3.8190 -5.2669 1.9427 15 6 4.7873 -5.8941 2.6806 16 1 5.2915 -6.7625 2.2830 17 6 5.1207 -5.4138 3.9395 18 7 4.5059 -4.3558 4.4243 19 14 6.4409 -6.2698 4.9463 20 1 7.7642 -5.6697 4.6398 21 1 6.1455 -6.1050 6.3923 22 1 6.4626 -7.7154 4.6072 23 6 2.0880 -5.3502 -1.4258 24 6 0.7396 -6.0163 -1.7066 25 6 1.0105 -4.5953 -2.2068 26 1 -0.3633 0.0033 1.0277 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5110 29 1 2.0137 2.1549 0.0004 30 1 4.4972 1.3252 -0.0117 31 1 3.7500 -3.2868 -0.0011 32 1 3.1098 -6.7995 0.6991 33 1 4.3472 -5.7477 -0.0292 34 1 3.3665 -4.4867 2.2997 35 1 4.7386 -4.0204 5.3042 36 1 2.9531 -5.7110 -1.9822 37 1 0.7175 -6.8154 -2.4476 38 1 0.0516 -6.1324 -0.8691 39 1 0.5005 -3.7770 -1.6982 40 1 1.1667 -4.4593 -3.2769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569301715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = 40.452394 kcal Electronic energy + Delta-G solvation = -21720.550159 eV Core-core repulsion = 18536.978716 eV Total energy + Delta-G solvation = -3183.571443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19664 -39.31212 -37.00282 -35.04951 -33.55571 -32.31604 -31.19161 -29.64719 -27.99748 -26.55784 -24.09753 -22.50323 -22.01852 -21.52386 -20.70219 -19.98358 -18.98905 -18.43156 -17.15854 -16.11008 -15.51808 -15.27137 -14.98348 -14.50123 -14.20539 -13.70599 -13.57107 -13.24255 -13.15036 -12.93969 -12.82721 -12.50145 -12.18003 -12.06365 -11.69146 -11.46614 -11.20127 -11.05178 -10.94166 -10.84999 -10.21666 -10.12394 -9.96178 -9.73572 -9.54741 -8.96884 -8.69391 -8.66861 -7.99735 -7.01888 -5.82885 -3.13479 1.66427 2.84554 3.23578 3.37458 3.39440 3.44231 3.46008 3.63995 4.16181 4.51230 4.88483 5.08532 5.09711 5.17584 5.26449 5.31769 5.40973 5.47596 5.51835 5.76500 5.84859 5.85673 5.89053 6.01577 6.04402 6.08879 6.20303 6.24406 6.35966 6.42006 6.50057 6.54831 6.64606 6.82079 6.93064 7.08833 7.48879 7.63097 7.86067 8.34398 8.51372 9.46295 10.01632 10.37138 11.39073 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.005744 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.583278 B = 4873.257299 C = 6391.637145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.081 4.081 3 C -0.215 4.215 4 C 0.022 3.978 5 N -0.536 5.536 6 H 0.418 0.582 7 C -0.050 4.050 8 C 0.592 3.408 9 O -0.533 6.533 10 N -0.708 5.708 11 C 0.170 3.830 12 H 0.090 0.910 13 C 0.148 3.852 14 N -0.732 5.732 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.184 4.184 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.396 0.604 32 H 0.037 0.963 33 H 0.024 0.976 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 7.492 -13.263 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.240 4.240 4 C -0.114 4.114 5 N -0.131 5.131 6 H 0.256 0.744 7 C -0.163 4.163 8 C 0.380 3.620 9 O -0.412 6.412 10 N -0.357 5.357 11 C 0.066 3.934 12 H 0.108 0.892 13 C 0.020 3.980 14 N -0.377 5.377 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.184 4.184 24 C -0.208 4.208 25 C -0.221 4.221 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.230 0.770 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.194 7.007 -13.181 15.506 hybrid contribution 1.731 -0.316 0.799 1.932 sum -2.464 6.691 -12.382 14.288 Atomic orbital electron populations 1.20306 0.89514 1.02467 1.02133 1.19897 0.95766 0.90808 1.02533 1.20736 0.91894 0.98602 1.12764 1.21947 0.99438 0.83099 1.06958 1.41989 1.07411 1.07266 1.56464 0.74441 1.20306 0.83672 0.93753 1.18598 1.16990 0.85968 0.82976 0.76048 1.90705 1.16099 1.83200 1.51153 1.45841 1.09347 1.06095 1.74439 1.20807 0.99595 0.79748 0.93255 0.89198 1.20924 0.93635 0.95446 0.88037 1.42360 1.45815 1.35422 1.14090 1.19210 1.12041 1.08923 0.97355 0.91117 1.24758 1.00143 0.98208 0.97653 1.69673 1.44436 1.25150 1.18542 0.86188 0.81363 0.78908 0.79683 1.21757 1.21733 1.20709 1.22647 0.93212 1.05364 0.97211 1.22895 0.98612 0.95877 1.03398 1.23276 1.02982 0.96559 0.99301 0.91659 0.92442 0.90222 0.84284 0.81477 0.76973 0.94562 0.95865 0.78009 0.93449 0.87996 0.89239 0.88681 0.86357 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.83 36.01 0.35 -0.83 16 2 C -0.08 -1.20 6.21 -104.16 -0.65 -1.85 16 3 C -0.22 -2.68 10.76 -39.98 -0.43 -3.11 16 4 C 0.02 0.25 11.89 -16.91 -0.20 0.04 16 5 N -0.54 -6.77 5.99 -9.39 -0.06 -6.82 16 6 H 0.42 4.50 8.19 -40.82 -0.33 4.17 16 7 C -0.05 -0.78 7.06 -81.98 -0.58 -1.36 16 8 C 0.59 10.13 7.12 -12.85 -0.09 10.04 16 9 O -0.53 -10.11 11.83 5.19 0.06 -10.05 16 10 N -0.71 -11.47 4.49 -55.12 -0.25 -11.72 16 11 C 0.17 2.88 2.43 -67.93 -0.17 2.72 16 12 H 0.09 1.73 7.33 -51.93 -0.38 1.35 16 13 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 14 N -0.73 -17.90 5.43 -59.91 -0.33 -18.23 16 15 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 19 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.16 -2.35 5.36 -90.62 -0.49 -2.84 16 24 C -0.17 -2.26 10.18 -26.69 -0.27 -2.53 16 25 C -0.18 -2.57 9.73 -26.70 -0.26 -2.83 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.18 6.49 -51.93 -0.34 0.84 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.40 6.01 7.73 -40.82 -0.32 5.70 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.39 10.16 7.33 -40.82 -0.30 9.87 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 39 H 0.12 1.92 5.02 -51.92 -0.26 1.66 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -31.81 332.90 -8.59 -40.40 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -5.69 Total: 18.38 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.05 Total: -6.93 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.10 Total: -63.82 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.06 Total: -10.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.81 -8.59 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569301715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.852 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds