Wall clock time and date at job start Mon Mar 30 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39836 * 126.45668 * 2 1 4 4 C 1.35450 * 107.86189 * 180.26526 * 3 2 1 5 5 N 1.35531 * 108.87683 * 359.74464 * 4 3 2 6 6 H 0.96994 * 125.68391 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.63787 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.22878 * 179.97438 * 7 5 4 9 9 O 1.21704 * 119.99568 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00608 * 0.03388 * 8 7 5 11 11 C 1.46500 * 120.00509 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46593 * 324.99907 * 11 10 8 13 13 C 1.52998 * 109.47003 * 204.99732 * 11 10 8 14 14 N 1.46500 * 109.47071 * 55.00255 * 13 11 10 15 15 C 1.36942 * 120.00244 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00458 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00317 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47262 * 89.99995 * 19 17 15 21 21 H 1.48505 * 109.47186 * 210.00479 * 19 17 15 22 22 H 1.48504 * 109.46827 * 330.00184 * 19 17 15 23 23 C 1.52996 * 109.47073 * 84.99721 * 11 10 8 24 24 C 1.53002 * 117.49888 * 231.25527 * 23 11 10 25 25 C 1.53000 * 117.50107 * 299.91289 * 23 11 10 26 26 H 1.09001 * 109.46706 * 270.18300 * 1 2 3 27 27 H 1.09004 * 109.46671 * 30.17820 * 1 2 3 28 28 H 1.08996 * 109.46990 * 150.18008 * 1 2 3 29 29 H 1.07998 * 126.06926 * 0.02562 * 3 2 1 30 30 H 1.08002 * 125.56322 * 179.72361 * 4 3 2 31 31 H 0.97006 * 119.99568 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.47096 * 174.99683 * 13 11 10 33 33 H 1.08996 * 109.47337 * 294.99987 * 13 11 10 34 34 H 0.96999 * 120.00125 * 359.97438 * 14 13 11 35 35 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 36 36 H 1.09002 * 115.54951 * 85.58501 * 23 11 10 37 37 H 1.09000 * 117.49996 * 215.00804 * 24 23 11 38 38 H 1.08999 * 117.49664 * 0.02562 * 24 23 11 39 39 H 1.09008 * 117.49673 * 359.97438 * 25 23 11 40 40 H 1.08999 * 117.49959 * 144.99502 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0060 5 7 3.6285 -0.6625 -0.0040 6 1 4.4191 -1.2244 -0.0069 7 6 2.3263 -1.1088 0.0039 8 6 1.8899 -2.5092 0.0079 9 8 0.7026 -2.7765 0.0145 10 7 2.8036 -3.4999 0.0044 11 6 2.3678 -4.8986 0.0089 12 1 1.4593 -4.9940 0.6036 13 6 3.4675 -5.7735 0.6138 14 7 3.8190 -5.2669 1.9427 15 6 4.7873 -5.8941 2.6806 16 1 5.2915 -6.7625 2.2830 17 6 5.1207 -5.4138 3.9395 18 7 4.5059 -4.3558 4.4243 19 14 6.4409 -6.2698 4.9463 20 1 7.7642 -5.6697 4.6398 21 1 6.1455 -6.1050 6.3923 22 1 6.4626 -7.7154 4.6072 23 6 2.0880 -5.3502 -1.4258 24 6 0.7396 -6.0163 -1.7066 25 6 1.0105 -4.5953 -2.2068 26 1 -0.3633 0.0033 1.0277 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5110 29 1 2.0137 2.1549 0.0004 30 1 4.4972 1.3252 -0.0117 31 1 3.7500 -3.2868 -0.0011 32 1 3.1098 -6.7995 0.6991 33 1 4.3472 -5.7477 -0.0292 34 1 3.3665 -4.4867 2.2997 35 1 4.7386 -4.0204 5.3042 36 1 2.9531 -5.7110 -1.9822 37 1 0.7175 -6.8154 -2.4476 38 1 0.0516 -6.1324 -0.8691 39 1 0.5005 -3.7770 -1.6982 40 1 1.1667 -4.4593 -3.2769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569301715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:09 Heat of formation + Delta-G solvation = 19.456805 kcal Electronic energy + Delta-G solvation = -21721.460596 eV Core-core repulsion = 18536.978716 eV Total energy + Delta-G solvation = -3184.481880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.25635 -40.57497 -38.29080 -36.64913 -35.10919 -33.49950 -32.94526 -30.85408 -29.47449 -27.71032 -25.95090 -23.79028 -23.11869 -23.04200 -21.74314 -21.24702 -20.20677 -19.56575 -19.06244 -17.40030 -16.85543 -16.66989 -16.42896 -15.92880 -15.52104 -15.13625 -14.97397 -14.71463 -14.51321 -14.30178 -13.94890 -13.65065 -13.55569 -13.21472 -13.14144 -12.81865 -12.72956 -12.52785 -12.48341 -12.26285 -12.10765 -11.87332 -11.28863 -11.12575 -11.00821 -10.80153 -10.02756 -9.66219 -9.06403 -9.04936 -7.96593 -5.27099 0.52985 1.46753 1.48427 1.56903 1.87453 2.09251 2.29764 2.40615 2.53915 3.02295 3.37629 3.55746 3.88960 3.98986 4.10650 4.15760 4.26564 4.28003 4.35410 4.42282 4.45221 4.60509 4.81383 4.86219 4.90524 4.92561 5.01693 5.04926 5.09049 5.19746 5.27702 5.35332 5.47770 5.49726 5.54548 5.82621 6.03979 6.23068 6.51548 6.64936 7.22263 7.30688 8.02925 8.27375 9.26074 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.005744 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.583278 B = 4873.257299 C = 6391.637145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.096 4.096 3 C -0.229 4.229 4 C 0.041 3.959 5 N -0.533 5.533 6 H 0.425 0.575 7 C -0.088 4.088 8 C 0.587 3.413 9 O -0.562 6.562 10 N -0.705 5.705 11 C 0.181 3.819 12 H 0.059 0.941 13 C 0.150 3.850 14 N -0.743 5.743 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.284 1.284 21 H -0.300 1.300 22 H -0.270 1.270 23 C -0.166 4.166 24 C -0.162 4.162 25 C -0.183 4.183 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.164 0.836 30 H 0.210 0.790 31 H 0.401 0.599 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 7.730 -14.617 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.252 4.252 4 C -0.096 4.096 5 N -0.129 5.129 6 H 0.264 0.736 7 C -0.201 4.201 8 C 0.377 3.623 9 O -0.442 6.442 10 N -0.354 5.354 11 C 0.076 3.924 12 H 0.077 0.923 13 C 0.023 3.977 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.211 1.211 21 H -0.227 1.227 22 H -0.195 1.195 23 C -0.186 4.186 24 C -0.200 4.200 25 C -0.220 4.220 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.181 0.819 30 H 0.227 0.773 31 H 0.236 0.764 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.205 0.795 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.674 7.206 -14.581 16.483 hybrid contribution 1.235 -0.345 1.171 1.737 sum -1.438 6.861 -13.411 15.132 Atomic orbital electron populations 1.20278 0.89413 1.02730 1.01740 1.20275 0.96368 0.91693 1.02197 1.21091 0.92007 0.99117 1.13012 1.22695 1.00601 0.82593 1.03666 1.42036 1.06689 1.08079 1.56072 0.73611 1.20183 0.85265 0.93013 1.21642 1.17287 0.85675 0.83853 0.75525 1.90684 1.17183 1.83791 1.52552 1.45760 1.09503 1.05727 1.74377 1.20563 0.97300 0.79994 0.94558 0.92277 1.21044 0.94890 0.95651 0.86072 1.42521 1.45291 1.34990 1.15763 1.19630 1.11789 1.08680 0.97526 0.90235 1.25557 1.02684 0.99201 0.99045 1.69842 1.46403 1.26988 1.18625 0.85138 0.78821 0.78388 0.77354 1.21108 1.22693 1.19458 1.22566 0.94384 1.06103 0.95499 1.22982 0.97313 0.96236 1.03423 1.23199 1.02505 0.96226 1.00030 0.92348 0.89898 0.92166 0.81878 0.77302 0.76419 0.94419 0.94067 0.79502 0.94147 0.86072 0.86520 0.89967 0.88843 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.33 9.83 71.24 0.70 -1.63 16 2 C -0.10 -2.82 6.21 -19.56 -0.12 -2.94 16 3 C -0.23 -5.23 10.76 22.01 0.24 -4.99 16 4 C 0.04 0.82 11.89 83.48 0.99 1.81 16 5 N -0.53 -12.88 5.99 -183.62 -1.10 -13.98 16 6 H 0.43 8.72 8.19 -92.71 -0.76 7.96 16 7 C -0.09 -2.77 7.06 40.35 0.28 -2.49 16 8 C 0.59 20.85 7.12 86.45 0.62 21.47 16 9 O -0.56 -22.53 11.83 -4.36 -0.05 -22.58 16 10 N -0.70 -23.29 4.49 -446.50 -2.01 -25.29 16 11 C 0.18 6.18 2.43 44.99 0.11 6.29 16 12 H 0.06 2.39 7.33 -2.39 -0.02 2.38 16 13 C 0.15 5.73 5.80 86.38 0.50 6.23 16 14 N -0.74 -36.55 5.43 -343.46 -1.87 -38.42 16 15 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 18 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 19 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.17 -4.57 5.36 -10.79 -0.06 -4.63 16 24 C -0.16 -4.12 10.18 30.62 0.31 -3.80 16 25 C -0.18 -4.98 9.73 30.62 0.30 -4.68 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.06 1.88 6.49 -2.39 -0.02 1.87 16 29 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.40 12.25 7.73 -92.70 -0.72 11.54 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.37 20.16 7.33 -92.71 -0.68 19.48 16 35 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 39 H 0.09 3.11 5.02 -2.38 -0.01 3.10 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -69.47 332.90 1.39 -68.08 By element: Atomic # 1 Polarization: 49.83 SS G_CDS: -1.08 Total: 48.75 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.18 Total: -5.35 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -4.69 Total: -136.16 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.47 1.39 -68.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569301715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.540 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds