Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39843 * 126.45834 * 2 1 4 4 C 1.35456 * 107.86479 * 180.26749 * 3 2 1 5 5 N 1.35530 * 108.87226 * 359.73418 * 4 3 2 6 6 H 0.96994 * 125.67692 * 179.97438 * 5 4 3 7 7 C 1.37658 * 108.64500 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.23120 * 180.02562 * 7 5 4 9 9 O 1.21699 * 119.99537 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00425 * 0.02562 * 8 7 5 11 11 C 1.46503 * 120.00358 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46951 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.47313 * 210.00112 * 19 17 15 22 22 H 1.48501 * 109.46991 * 330.00153 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 H 1.09006 * 109.46953 * 270.18593 * 1 2 3 27 27 H 1.09000 * 109.47522 * 30.18200 * 1 2 3 28 28 H 1.08998 * 109.46996 * 150.18494 * 1 2 3 29 29 H 1.07995 * 126.06676 * 359.97438 * 3 2 1 30 30 H 1.07999 * 125.55925 * 179.71796 * 4 3 2 31 31 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 33 33 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 35 35 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 36 36 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 37 37 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 38 38 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 39 39 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 40 40 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0060 5 7 3.6284 -0.6624 -0.0039 6 1 4.4190 -1.2243 -0.0074 7 6 2.3262 -1.1089 0.0031 8 6 1.8899 -2.5092 0.0080 9 8 0.7026 -2.7765 0.0136 10 7 2.8037 -3.4999 0.0063 11 6 2.3678 -4.8985 0.0106 12 1 1.4537 -4.9960 -0.5751 13 6 3.4618 -5.7755 -0.6017 14 7 3.8007 -5.2734 -1.9356 15 6 4.7619 -5.9032 -2.6805 16 1 5.2698 -6.7703 -2.2847 17 6 5.0833 -5.4272 -3.9441 18 7 4.4647 -4.3702 -4.4262 19 14 6.3940 -6.2866 -4.9605 20 1 5.7625 -7.3433 -5.7910 21 1 7.0638 -5.2977 -5.8428 22 1 7.3976 -6.9022 -4.0554 23 6 2.1017 -5.3453 1.4495 24 6 0.7560 -6.0105 1.7453 25 6 1.0316 -4.5877 2.2380 26 1 -0.3633 0.0033 1.0277 27 1 -0.3634 0.8883 -0.5166 28 1 -0.3633 -0.8916 -0.5110 29 1 2.0136 2.1549 -0.0004 30 1 4.4972 1.3253 -0.0119 31 1 3.7500 -3.2867 0.0015 32 1 3.1033 -6.8019 -0.6801 33 1 4.3476 -5.7475 0.0330 34 1 3.3448 -4.4945 -2.2909 35 1 4.6896 -4.0372 -5.3091 36 1 2.9720 -5.7042 1.9989 37 1 0.0601 -6.1295 0.9148 38 1 0.7410 -6.8067 2.4895 39 1 1.1977 -4.4485 3.3062 40 1 0.5175 -3.7707 1.7319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569301716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = 40.448513 kcal Electronic energy + Delta-G solvation = -21720.292748 eV Core-core repulsion = 18536.721137 eV Total energy + Delta-G solvation = -3183.571611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19541 -39.31153 -37.00296 -35.04867 -33.55535 -32.31664 -31.19145 -29.64657 -27.99832 -26.55640 -24.09718 -22.50517 -22.01493 -21.52380 -20.70097 -19.98293 -18.98796 -18.43151 -17.15785 -16.10948 -15.52137 -15.27317 -14.98465 -14.48714 -14.21284 -13.71294 -13.55862 -13.24547 -13.15822 -12.92055 -12.84621 -12.50330 -12.17584 -12.06093 -11.70459 -11.43896 -11.20583 -11.05069 -10.93335 -10.85516 -10.21968 -10.12456 -9.95978 -9.73333 -9.55157 -8.96825 -8.69612 -8.66555 -7.99737 -7.01921 -5.82902 -3.13507 1.66339 2.84518 3.23496 3.37692 3.39761 3.44172 3.45520 3.64069 4.16382 4.51222 4.88586 5.08566 5.09747 5.17815 5.26834 5.32042 5.41061 5.47718 5.51871 5.76615 5.85357 5.85808 5.89138 5.99161 6.04342 6.09034 6.20408 6.24921 6.36057 6.42257 6.50957 6.55216 6.64772 6.82143 6.93117 7.08994 7.48892 7.63055 7.86098 8.34328 8.51389 9.46254 10.01581 10.37134 11.39043 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005748 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.090814 B = 4870.268998 C = 6388.553014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.081 4.081 3 C -0.215 4.215 4 C 0.022 3.978 5 N -0.536 5.536 6 H 0.418 0.582 7 C -0.050 4.050 8 C 0.592 3.408 9 O -0.533 6.533 10 N -0.708 5.708 11 C 0.170 3.830 12 H 0.090 0.910 13 C 0.148 3.852 14 N -0.732 5.732 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.184 4.184 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.396 0.604 32 H 0.037 0.963 33 H 0.024 0.976 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 7.558 13.209 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.240 4.240 4 C -0.114 4.114 5 N -0.131 5.131 6 H 0.256 0.744 7 C -0.163 4.163 8 C 0.380 3.620 9 O -0.412 6.412 10 N -0.357 5.357 11 C 0.066 3.934 12 H 0.108 0.892 13 C 0.020 3.980 14 N -0.377 5.377 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.184 4.184 24 C -0.208 4.208 25 C -0.221 4.221 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.230 0.770 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.029 7.083 13.141 15.462 hybrid contribution 1.706 -0.331 -0.789 1.909 sum -2.323 6.753 12.351 14.267 Atomic orbital electron populations 1.20306 0.89517 1.02836 1.01785 1.19896 0.95766 0.90802 1.02528 1.20742 0.91895 0.98604 1.12763 1.21948 0.99441 0.83101 1.06951 1.41989 1.07413 1.07264 1.56459 0.74441 1.20311 0.83672 0.93752 1.18595 1.16987 0.85967 0.82979 0.76047 1.90703 1.16100 1.83198 1.51152 1.45843 1.09353 1.06096 1.74435 1.20807 0.99647 0.79757 0.93191 0.89204 1.20927 0.93731 0.95451 0.87939 1.42358 1.46338 1.35543 1.13442 1.19208 1.12433 1.08958 0.96933 0.91118 1.24758 1.00185 0.98189 0.97629 1.69671 1.44621 1.25189 1.18321 0.86191 0.81216 0.78521 0.80224 1.21627 1.21792 1.20768 1.22645 0.93310 1.05382 0.97094 1.22897 0.98600 0.95883 1.03405 1.23274 1.03026 0.96519 0.99292 0.91923 0.92334 0.90054 0.84287 0.81474 0.76971 0.94564 0.95861 0.78013 0.93447 0.88001 0.88682 0.89241 0.89967 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.83 36.00 0.35 -0.83 16 2 C -0.08 -1.20 6.21 -104.16 -0.65 -1.85 16 3 C -0.22 -2.68 10.76 -39.97 -0.43 -3.11 16 4 C 0.02 0.25 11.89 -16.91 -0.20 0.04 16 5 N -0.54 -6.76 5.99 -9.39 -0.06 -6.82 16 6 H 0.42 4.50 8.19 -40.82 -0.33 4.16 16 7 C -0.05 -0.78 7.06 -81.98 -0.58 -1.36 16 8 C 0.59 10.13 7.12 -12.86 -0.09 10.04 16 9 O -0.53 -10.10 11.83 5.19 0.06 -10.04 16 10 N -0.71 -11.47 4.49 -55.11 -0.25 -11.71 16 11 C 0.17 2.88 2.43 -67.93 -0.17 2.72 16 12 H 0.09 1.73 7.33 -51.93 -0.38 1.35 16 13 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 14 N -0.73 -17.89 5.43 -59.91 -0.33 -18.22 16 15 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.16 -2.36 5.36 -90.62 -0.49 -2.84 16 24 C -0.17 -2.26 10.18 -26.69 -0.27 -2.53 16 25 C -0.18 -2.58 9.74 -26.69 -0.26 -2.84 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.27 6.49 -51.93 -0.34 0.93 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.40 6.01 7.73 -40.82 -0.32 5.70 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.39 10.15 7.33 -40.82 -0.30 9.85 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 37 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.12 1.93 5.01 -51.93 -0.26 1.67 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -31.78 332.90 -8.59 -40.37 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -5.69 Total: 18.39 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.05 Total: -6.95 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 0.10 Total: -63.78 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.06 Total: -10.04 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.78 -8.59 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569301716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.816 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds